Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001331.1

Orthogroup ID

OG0001927

Physical Location & Seq

Genomic Coordinates Forward (+)

34105 .. 35346

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001331.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgtctcgcagacctctaaacccatatgcgcaaccctattttgctcaccattttcatcccaatcaaagctctctctgtgaagtcccaacatgtgaagctactgccacggatcaaaaccctagagttgttgttcctcggagaaagagagacaacttcaggcgcgagaggaacgcggggcctaggttgaggtcttcacaaacaagcttggccaagagcccaaatcataaagcttcaaactttgcgtcaaccagtatctgcggtggtgctgtagttccctgttcttcaaggcctgagaggaaaaacaataggggaaggaatctagttccgagaaaattttgggagaagaagaagattgcaaatcttggctacggtttcgtgaatttcaccactgctgttggagcgctaggtttctatgagaaataccacaagaccatgtggaagaaggtcattcagagcaccaaaatctgtgagataacttgcgccaagatccagggttttgaggcactgaggaaaagttttagacgcaaaatatatcatggtctcacaaacgattttttgcctgtgatcttggctcctgcatgtgatggagtgagggagtccaaccacatacccgtacgtgggacgacttttgggtgcagcggagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_2

Protein Analysis

215

Amino Acids

24.27

Weight (kDa)

10.25

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37140 AT1G37140
fragaria_vesca	FvH4_2g26190 FvH4_2g26200 FvH4_2g26210 FvH4_2g26220
malus_domestica	MD08G1171900.v1.1 MD08G1172100.v1.1 MD15G1357500.v1.1
prunus_persica	Prupe.1G504600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294631 RchiOBHm_Chr6g0294781 RchiOBHm_Chr6g0294791
rosa_laevigata	RLG00000011840 RLG00000011841 RLG00000011842 RLG00000011853
rosa_multiflora	Rmu_sc0001331.1_g000005 Rmu_sc0001331.1_g000006 Rmu_sc0006264.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173010 Rroxscaffold_7G00173020 Rroxscaffold_7G00173030 Rroxscaffold_7G00173150
rosa_rugosa	Rorug06G0246400 Rorug06G0246900 Rorug06G0246900 Rorug06G0246900
rosa_samantha	Rh6AG358800 Rh6AG360300 Rh6AG360400 Rh6BG366000 Rh6BG366900 Rh6BG367000 Rh6BG367100 Rh6CG372600 Rh6CG372800 Rh6CG374000 Rh6CG374100 Rh6DG359400 Rh6DG359700 Rh6DG360600 Rh6DG360700
rosa_wichuraiana	Rw6G031310 Rw6G031430 Rw6G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	30
AccII	CGCG	2 cut(s)	162, 173
AciI	CCGC	3 cut(s)	173, 258, 639
AclWI	GGATC	2 cut(s)	117, 481
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	332, 379
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	615
AfeI	AGCGCT	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	617, 618
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	234, 285
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	4 cut(s)	69, 98, 204, 230
AluI	AGCT	4 cut(s)	69, 98, 204, 230
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	3 cut(s)	9, 141, 545
AlwI	GGATC	2 cut(s)	117, 481
AlwNI	CAGNNNCTG	1 cut(s)	255
Aor51HI	AGCGCT	1 cut(s)	402
AoxI	GGCC	3 cut(s)	176, 207, 287
ApeKI	GCWGC	1 cut(s)	636
ApoI	RAATTY	2 cut(s)	332, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspA2I	CCTAGG	1 cut(s)	179
AspLEI	GCGC	4 cut(s)	31, 162, 403, 482
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	38, 376
AvrII	CCTAGG	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	458
BccI	CCATC	1 cut(s)	578
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	3 cut(s)	9, 141, 545
BfaI	CTAG	4 cut(s)	120, 180, 320, 404
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	404
BisI	GCNGC	1 cut(s)	637
BlnI	CCTAGG	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	638
Bme1390I	CCNGG	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	177, 573
BmrFI	CCNGG	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	617
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	4 cut(s)	105, 134, 179, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 618
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	4 cut(s)	105, 134, 179, 490
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	617, 618
BseMII	CTCAG	2 cut(s)	282, 497
BseNI	ACTGG	1 cut(s)	249
Bsh1236I	CGCG	2 cut(s)	162, 173
BshFI	GGCC	3 cut(s)	178, 209, 289
BsiHKAI	GWGCWC	1 cut(s)	458
BsiWI	CGTACG	1 cut(s)	613
BslFI	GGGAC	2 cut(s)	68, 634
BslI	CCNNNNNNNGG	2 cut(s)	617, 618
BsmAI	GTCTC	3 cut(s)	9, 141, 545
BsmFI	GGGAC	2 cut(s)	68, 634
BsnI	GGCC	3 cut(s)	178, 209, 289
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	218, 458
Bsp143I	GATC	3 cut(s)	109, 486, 564
BspACI	CCGC	3 cut(s)	173, 258, 639
BspANI	GGCC	3 cut(s)	178, 209, 289
BspCNI	CTCAG	2 cut(s)	283, 498
BspFNI	CGCG	2 cut(s)	162, 173
BspLI	GGNNCC	2 cut(s)	177, 573
BspPI	GGATC	2 cut(s)	117, 481
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	4 cut(s)	105, 134, 179, 490
BssMI	GATC	3 cut(s)	109, 486, 564
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	617
BstDEI	CTNAG	2 cut(s)	291, 506
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	2 cut(s)	162, 173
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	4 cut(s)	31, 162, 403, 482
BstKTI	GATC	3 cut(s)	112, 489, 567
BstMAI	GTCTC	3 cut(s)	9, 141, 545
BstMBI	GATC	3 cut(s)	109, 486, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	2 cut(s)	93, 582
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	2 cut(s)	162, 173
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	178, 209, 289
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	387, 503
CaiI	CAGNNNCTG	1 cut(s)	255
CfoI	GCGC	4 cut(s)	31, 162, 403, 482
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	2 cut(s)	231, 531
Csp6I	GTAC	1 cut(s)	614
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	4 cut(s)	90, 433, 536, 579
CviQI	GTAC	1 cut(s)	614
DdeI	CTNAG	2 cut(s)	291, 506
DpnI	GATC	3 cut(s)	111, 488, 566
DpnII	GATC	3 cut(s)	109, 486, 564
EaeI	YGGCCR	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	4 cut(s)	93, 436, 539, 582
FaqI	GGGAC	2 cut(s)	68, 634
FatI	CATG	4 cut(s)	89, 432, 535, 578
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	637
FokI	GGATG	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	637
FspBI	CTAG	4 cut(s)	120, 180, 320, 404
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	4 cut(s)	30, 161, 402, 481
GluI	GCNGC	1 cut(s)	637
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	178, 209, 289
HgaI	GACGC	2 cut(s)	231, 531
HhaI	GCGC	4 cut(s)	31, 162, 403, 482
Hin1II	CATG	4 cut(s)	93, 436, 539, 582
Hin6I	GCGC	4 cut(s)	29, 160, 401, 480
HinP1I	GCGC	4 cut(s)	29, 160, 401, 480
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	2 cut(s)	202, 228
HinfI	GANTC	2 cut(s)	316, 596
HphI	GGTGA	2 cut(s)	38, 376
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	3 cut(s)	138, 327, 453
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	306, 436
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	3 cut(s)	356, 578, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	291, 506
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	4 cut(s)	93, 436, 539, 582
HspAI	GCGC	4 cut(s)	29, 160, 401, 480
Kzo9I	GATC	3 cut(s)	109, 486, 564
LmnI	GCTCC	2 cut(s)	398, 577
LpnPI	CCDG	8 cut(s)	142, 262, 289, 303, 476, 503, 573, 588
MaeI	CTAG	4 cut(s)	120, 180, 320, 404
MaeII	ACGT	1 cut(s)	616
MalI	GATC	3 cut(s)	111, 488, 566
MboI	GATC	3 cut(s)	109, 486, 564
MboII	GAAGA	6 cut(s)	183, 273, 355, 358, 361, 451
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	218, 458
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	332, 379
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	2 cut(s)	376, 624
MnlI	CCTC	8 cut(s)	24, 144, 159, 180, 288, 493, 501, 585
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	2 cut(s)	162, 173
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	109, 486, 564
NlaIII	CATG	4 cut(s)	93, 436, 539, 582
NlaIV	GGNNCC	2 cut(s)	177, 573
NsbI	TGCGCA	1 cut(s)	30
NspI	RCATGY	2 cut(s)	93, 582
PceI	AGGCCT	1 cut(s)	289
PciI	ACATGT	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	316
Pfl23II	CGTACG	1 cut(s)	613
PkrI	GCNGC	1 cut(s)	638
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Ppu21I	YACGTR	1 cut(s)	617
PscI	ACATGT	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspLI	CGTACG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	177, 573
PspPI	GGNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	486
RsaI	GTAC	1 cut(s)	615
RsaNI	GTAC	1 cut(s)	614
SatI	GCNGC	1 cut(s)	637
Sau3AI	GATC	3 cut(s)	109, 486, 564
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	2 cut(s)	218, 458
SfcI	CTRYAG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	332, 379
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	3 cut(s)	173, 258, 639
SspMI	CTAG	4 cut(s)	120, 180, 320, 404
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	619
TasI	AATT	2 cut(s)	332, 379
TfiI	GAWTC	1 cut(s)	316
TscAI	CASTG	2 cut(s)	394, 510
TseI	GCWGC	1 cut(s)	636
TspDTI	ATGAA	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	394, 510
XapI	RAATTY	2 cut(s)	332, 379
XceI	RCATGY	2 cut(s)	93, 582
XmaJI	CCTAGG	1 cut(s)	179
XspI	CTAG	4 cut(s)	120, 180, 320, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.