gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48720 |
| fragaria_vesca | FvH4_2g28692 FvH4_5g18842 FvH4_6g09151 |
| malus_domestica | MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1 |
| prunus_persica | Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1 |
| pyrus_communis | pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240 |
| rosa_chinensis | RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371 |
| rosa_roxburghii | Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260 |
| rosa_samantha | Rh3BG173000 |
| rosa_wichuraiana | Rw4G008490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 67 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 31 |
| AflIII | ACRYGT | 1 cut(s) | 99 |
| AgsI | TTSAA | 2 cut(s) | 131, 260 |
| AjiI | CACGTC | 1 cut(s) | 100 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 266 |
| AluBI | AGCT | 2 cut(s) | 206, 263 |
| AluI | AGCT | 2 cut(s) | 206, 263 |
| Alw21I | GWGCWC | 2 cut(s) | 39, 94 |
| Alw26I | GTCTC | 2 cut(s) | 174, 189 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 122 |
| AspA2I | CCTAGG | 1 cut(s) | 85 |
| AsuC2I | CCSGG | 1 cut(s) | 32 |
| AvrII | CCTAGG | 1 cut(s) | 85 |
| Bbv12I | GWGCWC | 2 cut(s) | 39, 94 |
| BccI | CCATC | 2 cut(s) | 164, 272 |
| BcnI | CCSGG | 1 cut(s) | 32 |
| BcoDI | GTCTC | 2 cut(s) | 174, 189 |
| BfaI | CTAG | 1 cut(s) | 86 |
| BlnI | CCTAGG | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 1 cut(s) | 32 |
| BmgBI | CACGTC | 1 cut(s) | 100 |
| BmrFI | CCNGG | 1 cut(s) | 32 |
| BpuEI | CTTGAG | 1 cut(s) | 169 |
| BpuMI | CCSGG | 1 cut(s) | 32 |
| BsaJI | CCNNGG | 1 cut(s) | 85 |
| BsaWI | WCCGGW | 1 cut(s) | 133 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 1 cut(s) | 85 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 31 |
| BsiHKAI | GWGCWC | 2 cut(s) | 39, 94 |
| BsiSI | CCGG | 2 cut(s) | 32, 134 |
| BslFI | GGGAC | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 31 |
| BsmAI | GTCTC | 2 cut(s) | 174, 189 |
| BsmFI | GGGAC | 1 cut(s) | 14 |
| Bsp1286I | GDGCHC | 2 cut(s) | 39, 94 |
| BssECI | CCNNGG | 1 cut(s) | 85 |
| BssT1I | CCWWGG | 1 cut(s) | 85 |
| BstMAI | GTCTC | 2 cut(s) | 174, 189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 269 |
| BstSCI | CCNGG | 1 cut(s) | 30 |
| BtrI | CACGTC | 1 cut(s) | 100 |
| CviAII | CATG | 1 cut(s) | 95 |
| CviJI | RGCY | 3 cut(s) | 80, 206, 263 |
| CviKI_1 | RGCY | 3 cut(s) | 80, 206, 263 |
| Eco130I | CCWWGG | 1 cut(s) | 85 |
| EcoT14I | CCWWGG | 1 cut(s) | 85 |
| ErhI | CCWWGG | 1 cut(s) | 85 |
| FaeI | CATG | 1 cut(s) | 98 |
| FaiI | YATR | 2 cut(s) | 54, 96 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 135, 167 |
| FaqI | GGGAC | 1 cut(s) | 14 |
| FatI | CATG | 1 cut(s) | 94 |
| FblI | GTMKAC | 1 cut(s) | 67 |
| FspBI | CTAG | 1 cut(s) | 86 |
| HapII | CCGG | 2 cut(s) | 32, 134 |
| Hin1II | CATG | 1 cut(s) | 98 |
| HinfI | GANTC | 3 cut(s) | 64, 182, 288 |
| HpaII | CCGG | 2 cut(s) | 32, 134 |
| Hpy166II | GTNNAC | 1 cut(s) | 68 |
| Hpy188I | TCNGA | 1 cut(s) | 293 |
| Hpy188III | TCNNGA | 3 cut(s) | 115, 186, 247 |
| Hpy8I | GTNNAC | 1 cut(s) | 68 |
| Hpy99I | CGWCG | 1 cut(s) | 271 |
| HpyAV | CCTTC | 4 cut(s) | 31, 70, 137, 244 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 242, 266 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 269 |
| HpySE526I | ACGT | 3 cut(s) | 99, 242, 266 |
| Hsp92II | CATG | 1 cut(s) | 98 |
| LmnI | GCTCC | 1 cut(s) | 89 |
| LpnPI | CCDG | 2 cut(s) | 45, 147 |
| MaeI | CTAG | 1 cut(s) | 86 |
| MaeII | ACGT | 3 cut(s) | 99, 242, 266 |
| MaeIII | GTNAC | 1 cut(s) | 8 |
| MboII | GAAGA | 1 cut(s) | 248 |
| MhlI | GDGCHC | 2 cut(s) | 39, 94 |
| MluCI | AATT | 1 cut(s) | 58 |
| MlyI | GAGTC | 2 cut(s) | 73, 176 |
| MroXI | GAANNNNTTC | 1 cut(s) | 122 |
| MspI | CCGG | 2 cut(s) | 32, 134 |
| MspR9I | CCNGG | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 269 |
| NciI | CCSGG | 1 cut(s) | 32 |
| NlaIII | CATG | 1 cut(s) | 98 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PdmI | GAANNNNTTC | 1 cut(s) | 122 |
| PfeI | GAWTC | 1 cut(s) | 288 |
| PleI | GAGTC | 2 cut(s) | 72, 176 |
| PpsI | GAGTC | 2 cut(s) | 72, 176 |
| SchI | GAGTC | 2 cut(s) | 73, 176 |
| ScrFI | CCNGG | 1 cut(s) | 32 |
| SduI | GDGCHC | 2 cut(s) | 39, 94 |
| SetI | ASST | 8 cut(s) | 102, 124, 148, 208, 245, 255, 265, 269 |
| SmlI | CTYRAG | 1 cut(s) | 184 |
| SmoI | CTYRAG | 1 cut(s) | 184 |
| Sse9I | AATT | 1 cut(s) | 58 |
| SspMI | CTAG | 1 cut(s) | 86 |
| StyD4I | CCNGG | 1 cut(s) | 30 |
| StyI | CCWWGG | 1 cut(s) | 85 |
| TaiI | ACGT | 3 cut(s) | 102, 245, 269 |
| TaqI | TCGA | 2 cut(s) | 114, 246 |
| TasI | AATT | 1 cut(s) | 58 |
| TfiI | GAWTC | 1 cut(s) | 288 |
| TspDTI | ATGAA | 4 cut(s) | 89, 115, 156, 249 |
| XmaJI | CCTAGG | 1 cut(s) | 85 |
| XmiI | GTMKAC | 1 cut(s) | 67 |
| XmnI | GAANNNNTTC | 1 cut(s) | 122 |
| XspI | CTAG | 1 cut(s) | 86 |