Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000160

Orthogroup ID

OG0002557

Physical Location & Seq

Genomic Coordinates Forward (+)

334828 .. 336768

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_160G00433850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTCGTGCCCTTCTCCTTAGTGCCGGTATGCCAAAATACCTTTGGGGAGAGGCGGTGTTGTGTGCCTCCCATCTTATTAATTGTCTTCCATCTTCTTCTTTTCAATGTCGTATTCCATTTGAGGTATTGTCTAGTTATGTCTCTATCCCATCTCTTAATACCCTTCTTGCTCGCGTCTTTGGTTACGTAGCCTATGTCCATCTTTATAAGAACCAACGTTCCAAGTTAGATGCAATGGGTCGCAAGTGTGTCTTTGTCGGGTATGGGACTCATCGGAAAGGATACAAGTGTTTCCATCCTCCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

103

Amino Acids

11.52

Weight (kDa)

9.63

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_retrovirus	PF25597	64 - 102	9.9e-14	Retroviral polymerase SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48720
fragaria_vesca	FvH4_2g28692 FvH4_5g18842 FvH4_6g09151
malus_domestica	MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1
prunus_persica	Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1
pyrus_communis	pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240
rosa_chinensis	RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371
rosa_roxburghii	Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260
rosa_samantha	Rh3BG173000
rosa_wichuraiana	Rw4G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	56
AclI	AACGTT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	107
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
Alw26I	GTCTC	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	13
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BbsI	GAAGAC	1 cut(s)	80
BccI	CCATC	5 cut(s)	81, 100, 160, 210, 306
BciVI	GTATCC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	278
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse118I	RCCGGY	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	13
Bsh1236I	CGCG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	13
BstSNI	TACGTA	1 cut(s)	190
BstUI	CGCG	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	26
CseI	GACGC	1 cut(s)	166
CviJI	RGCY	1 cut(s)	194
CviKI_1	RGCY	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	190
FaiI	YATR	5 cut(s)	32, 141, 198, 210, 267
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	283
FokI	GGATG	1 cut(s)	285
FspBI	CTAG	1 cut(s)	135
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	279
HpyAV	CCTTC	2 cut(s)	23, 176
HpyCH4IV	ACGT	2 cut(s)	189, 220
HpyCH4V	TGCA	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	2 cut(s)	189, 220
LpnPI	CCDG	1 cut(s)	40
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	2 cut(s)	189, 220
MaeIII	GTNAC	1 cut(s)	185
MboII	GAAGA	3 cut(s)	80, 87, 90
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	46, 79, 118, 312
MseI	TTAA	3 cut(s)	81, 159, 310
MspI	CCGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	177
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	190
PshBI	ATTAAT	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	81, 159, 310
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	4 cut(s)	45, 129, 192, 223
SfaNI	GCATC	1 cut(s)	223
SnaBI	TACGTA	1 cut(s)	190
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	135
TaiI	ACGT	2 cut(s)	192, 223
TasI	AATT	1 cut(s)	82
Tru1I	TTAA	3 cut(s)	81, 159, 310
Tru9I	TTAA	3 cut(s)	81, 159, 310
VspI	ATTAAT	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.