transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48720 |
| fragaria_vesca | FvH4_2g28692 FvH4_5g18842 FvH4_6g09151 |
| malus_domestica | MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1 |
| prunus_persica | Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1 |
| pyrus_communis | pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240 |
| rosa_chinensis | RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371 |
| rosa_roxburghii | Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260 |
| rosa_samantha | Rh3BG173000 |
| rosa_wichuraiana | Rw4G008490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 152, 269 |
| AcuI | CTGAAG | 1 cut(s) | 203 |
| AfaI | GTAC | 1 cut(s) | 138 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 175 |
| AgsI | TTSAA | 1 cut(s) | 192 |
| AluBI | AGCT | 2 cut(s) | 233, 288 |
| AluI | AGCT | 2 cut(s) | 233, 288 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 233, 265 |
| AspS9I | GGNCC | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 283 |
| AsuNHI | GCTAGC | 1 cut(s) | 284 |
| AvaII | GGWCC | 1 cut(s) | 11 |
| BccI | CCATC | 1 cut(s) | 234 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BfaI | CTAG | 1 cut(s) | 285 |
| Bme18I | GGWCC | 1 cut(s) | 11 |
| BmgT120I | GGNCC | 1 cut(s) | 11 |
| BmrI | ACTGGG | 1 cut(s) | 26 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BmtI | GCTAGC | 1 cut(s) | 288 |
| BmuI | ACTGGG | 1 cut(s) | 26 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 245, 277 |
| Bpu10I | CCTNAGC | 1 cut(s) | 289 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 175 |
| Bse1I | ACTGG | 1 cut(s) | 32 |
| BseGI | GGATG | 3 cut(s) | 84, 222, 244 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BseNI | ACTGG | 1 cut(s) | 32 |
| Bsh1285I | CGRYCG | 1 cut(s) | 93 |
| BsiEI | CGRYCG | 1 cut(s) | 93 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| Bsp143I | GATC | 2 cut(s) | 90, 298 |
| BspACI | CCGC | 2 cut(s) | 152, 269 |
| BspOI | GCTAGC | 1 cut(s) | 288 |
| BsrI | ACTGG | 1 cut(s) | 32 |
| BssMI | GATC | 2 cut(s) | 90, 298 |
| BstC8I | GCNNGC | 1 cut(s) | 286 |
| BstDEI | CTNAG | 1 cut(s) | 289 |
| BstF5I | GGATG | 3 cut(s) | 84, 222, 244 |
| BstKTI | GATC | 2 cut(s) | 93, 301 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstMBI | GATC | 2 cut(s) | 90, 298 |
| BstMCI | CGRYCG | 1 cut(s) | 93 |
| BtsCI | GGATG | 3 cut(s) | 84, 222, 244 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| Cac8I | GCNNGC | 1 cut(s) | 286 |
| Cfr13I | GGNCC | 1 cut(s) | 11 |
| Csp6I | GTAC | 1 cut(s) | 137 |
| CviJI | RGCY | 3 cut(s) | 167, 233, 288 |
| CviKI_1 | RGCY | 3 cut(s) | 167, 233, 288 |
| CviQI | GTAC | 1 cut(s) | 137 |
| DdeI | CTNAG | 1 cut(s) | 289 |
| DpnI | GATC | 2 cut(s) | 92, 300 |
| DpnII | GATC | 2 cut(s) | 90, 298 |
| Eco47I | GGWCC | 1 cut(s) | 11 |
| Eco57I | CTGAAG | 1 cut(s) | 203 |
| FokI | GGATG | 3 cut(s) | 91, 209, 251 |
| FspBI | CTAG | 1 cut(s) | 285 |
| HindIII | AAGCTT | 1 cut(s) | 231 |
| HinfI | GANTC | 2 cut(s) | 188, 274 |
| HphI | GGTGA | 2 cut(s) | 37, 283 |
| Hpy188I | TCNGA | 1 cut(s) | 78 |
| Hpy188III | TCNNGA | 1 cut(s) | 302 |
| HpyAV | CCTTC | 1 cut(s) | 178 |
| HpyF3I | CTNAG | 1 cut(s) | 289 |
| Kzo9I | GATC | 2 cut(s) | 90, 298 |
| LpnPI | CCDG | 2 cut(s) | 45, 153 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 285 |
| MalI | GATC | 2 cut(s) | 92, 300 |
| MboI | GATC | 2 cut(s) | 90, 298 |
| MboII | GAAGA | 2 cut(s) | 65, 208 |
| MfeI | CAATTG | 1 cut(s) | 264 |
| MluCI | AATT | 2 cut(s) | 64, 264 |
| MnlI | CCTC | 2 cut(s) | 75, 169 |
| MseI | TTAA | 1 cut(s) | 120 |
| MunI | CAATTG | 1 cut(s) | 264 |
| NdeII | GATC | 2 cut(s) | 90, 298 |
| NheI | GCTAGC | 1 cut(s) | 284 |
| PfeI | GAWTC | 2 cut(s) | 188, 274 |
| Ple19I | CGATCG | 1 cut(s) | 93 |
| PspPI | GGNCC | 1 cut(s) | 11 |
| PvuI | CGATCG | 1 cut(s) | 93 |
| RsaI | GTAC | 1 cut(s) | 138 |
| RsaNI | GTAC | 1 cut(s) | 137 |
| SaqAI | TTAA | 1 cut(s) | 120 |
| Sau3AI | GATC | 2 cut(s) | 90, 298 |
| Sau96I | GGNCC | 1 cut(s) | 11 |
| SetI | ASST | 5 cut(s) | 142, 213, 235, 290, 295 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SgeI | CNNG | 8 cut(s) | 44, 120, 152, 176, 204, 242, 293, 297 |
| SinI | GGWCC | 1 cut(s) | 11 |
| Sse9I | AATT | 2 cut(s) | 64, 264 |
| SsiI | CCGC | 2 cut(s) | 152, 269 |
| SspMI | CTAG | 1 cut(s) | 285 |
| TaqI | TCGA | 1 cut(s) | 89 |
| TasI | AATT | 2 cut(s) | 64, 264 |
| TfiI | GAWTC | 2 cut(s) | 188, 274 |
| Tru1I | TTAA | 1 cut(s) | 120 |
| Tru9I | TTAA | 1 cut(s) | 120 |
| TscAI | CASTG | 1 cut(s) | 186 |
| TspDTI | ATGAA | 1 cut(s) | 162 |
| TspRI | CASTG | 1 cut(s) | 186 |
| VpaK11BI | GGWCC | 1 cut(s) | 11 |
| XspI | CTAG | 1 cut(s) | 285 |