Rroxscaffold_1G00046300

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002557
Physical Location & Seq
Reverse (-)
65464224 .. 65465006
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046300.1

Sequence Viewer

Length: 393 bp
ATGGATGATATTGACATTTGTGTACAGGACAAAGCAACAAAGGCCCTGTTATACAAGGGAAAGAGTAATGGTGAAGGATCGTTTCTGTTCAAAAGTCCAAGATTTCCTTCTATCTCTCAACATATTCATACTACCTTTGTTGGTTCAGCTATCAAGTCCTCTCTCCGGCATCAAAGACTTGGTCATCCTACTTGTGATGTTGCTGCTAAAATGCTATCATTTTCTCAAGTGCAGTTTAGCAATGATCCTAGTCCTCATATTTGTTCTTCTGTCTTAGTGGAAAGATGCATAGGTTACCTTTTATTGAATCGGTCTCTAGGTCGGTTGTTCCATTTCGGAAAGTTCACTCGATGTATGGGGTGCTGCTCCTTGTTTGTCTTTGGAAGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

130

Amino Acids

14.49

Weight (kDa)

9.4

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 85, 239
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 91, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 2 cut(s) 85, 239
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 203, 363
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 83
BbvI GCAGC 2 cut(s) 190, 350
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 2 cut(s) 249, 317
BisI GCNGC 2 cut(s) 204, 364
BlsI GCNGC 2 cut(s) 205, 365
BmgT120I GGNCC 1 cut(s) 43
BmsI GCATC 2 cut(s) 178, 275
BpuEI CTTGAG 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 247
BseGI GGATG 2 cut(s) 10, 184
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 190, 350
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 318
BsnI GGCC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 318
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 2 cut(s) 77, 244
BspANI GGCC 1 cut(s) 44
BspPI GGATC 2 cut(s) 85, 239
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 22
BssMI GATC 2 cut(s) 77, 244
BstAUI TGTACA 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 293
BstF5I GGATG 2 cut(s) 10, 184
BstKTI GATC 2 cut(s) 80, 247
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 2 cut(s) 77, 244
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstPI GGTNACC 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 190, 350
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 10, 184
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 3 cut(s) 44, 149, 388
CviKI_1 RGCY 3 cut(s) 44, 149, 388
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 274
DpnI GATC 2 cut(s) 79, 246
DpnII GATC 2 cut(s) 77, 244
Eco31I GGTCTC 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 290
FaiI YATR 6 cut(s) 52, 123, 129, 258, 290, 356
FalI AAGNNNNNCTT 2 cut(s) 91, 123
Fnu4HI GCNGC 2 cut(s) 204, 364
FokI GGATG 2 cut(s) 17, 171
Fsp4HI GCNGC 2 cut(s) 204, 364
FspBI CTAG 2 cut(s) 249, 317
GluI GCNGC 2 cut(s) 204, 364
HaeIII GGCC 1 cut(s) 44
HapII CCGG 1 cut(s) 166
HinfI GANTC 1 cut(s) 307
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 2 cut(s) 23, 345
Hpy188I TCNGA 1 cut(s) 338
Hpy8I GTNNAC 2 cut(s) 23, 345
HpyAV CCTTC 3 cut(s) 68, 117, 378
HpyCH4V TGCA 2 cut(s) 232, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 274
Kzo9I GATC 2 cut(s) 77, 244
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 3 cut(s) 11, 59, 179
Lsp1109I GCAGC 2 cut(s) 190, 350
LweI GCATC 2 cut(s) 178, 275
MaeI CTAG 2 cut(s) 249, 317
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 79, 246
MboI GATC 2 cut(s) 77, 244
MboII GAAGA 1 cut(s) 258
MnlI CCTC 2 cut(s) 169, 264
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 1 cut(s) 391
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 77, 244
NsiI ATGCAT 1 cut(s) 290
PfeI GAWTC 1 cut(s) 307
PflFI GACNNNGTC 1 cut(s) 180
PkrI GCNGC 2 cut(s) 205, 365
PspEI GGTNACC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 180
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 2 cut(s) 204, 364
Sau3AI GATC 2 cut(s) 77, 244
Sau96I GGNCC 1 cut(s) 43
SetI ASST 5 cut(s) 137, 151, 295, 300, 322
SfaNI GCATC 2 cut(s) 178, 275
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SspMI CTAG 2 cut(s) 249, 317
TaqI TCGA 1 cut(s) 349
TaqII GACCGA 1 cut(s) 300
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TseI GCWGC 2 cut(s) 203, 363
TspDTI ATGAA 1 cut(s) 116
Tth111I GACNNNGTC 1 cut(s) 180
XspI CTAG 2 cut(s) 249, 317
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.