Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002557

Physical Location & Seq

Genomic Coordinates Forward (+)

5439618 .. 5440331

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAAAGGGAGGAAAAGTGAGTTGTCTCATCTCAGAATTTTTGGATGTGTTTGTTATGTTCACATCCAAGCAATACATAGAGACAAATTGGATGCGAAGGCTGCCAAATGTGTGTTTTTGGGTTACTCCACAACTCAAAAGGGTTACAAATGCTATAATCCAAAAACCAGAAAGCTGGTGGTTTCTAGAGATGTTAGATTTGATGAATCATCTCCCTTCTTTAGCGGACCAGAAGTTTCCACTCAAGGGGAGTTCTTCAGTGATTTTATTTCATTGCCTCTCCCAACTCTTACCATGAATGATGCAGCAGTTATTCCTTCCTCTACTCCTTTAGAAAAGACACCTACTCCTACTCCTACAGTTATACCAGATTCTCCACCTACACTAGATTCTCAAAATGATGATGTGTGTGTAGAACAACATGAAGTGGTGTTGCCTGCTGAAGCAACACAAGAAGATGTTGAAGAAGAGATTGAAGAAGAGGTTGTTGAGGTTCAACCTCAAAGGAGGTATCCTACTCGAATTAGGAAACCTCCATCAAAGTGGGACAATTACAAGACCTTTGCTGCAAGGTATCCAATCAAAAAGTTTCTTTCTTACGACAAAGTGTCAAAATCGCATGTTGCCTTTCTCTCAAACATTTCAAGTGAAAGTGAACCAAGAACTTTTCAAGAAGCAAATCTTCAACCAACCTGGAAACAGGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

237

Amino Acids

26.82

Weight (kDa)

6.24

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_retrovirus	PF25597	16 - 75	1.8e-28	Retroviral polymerase SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48720
fragaria_vesca	FvH4_2g28692 FvH4_5g18842 FvH4_6g09151
malus_domestica	MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1
prunus_persica	Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1
pyrus_communis	pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240
rosa_chinensis	RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371
rosa_roxburghii	Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260
rosa_samantha	Rh3BG173000
rosa_wichuraiana	Rw4G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	241, 462
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	6 cut(s)	464, 476, 497, 645, 671, 686
AhdI	GACNNNNNGTC	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	692
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	30, 75
ApeKI	GCWGC	3 cut(s)	101, 305, 566
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BbvI	GCAGC	3 cut(s)	88, 317, 553
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	694
BciVI	GTATCC	2 cut(s)	522, 585
BcoDI	GTCTC	2 cut(s)	30, 75
BfaI	CTAG	2 cut(s)	186, 386
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	2 cut(s)	522, 585
BisI	GCNGC	3 cut(s)	102, 306, 567
BlsI	GCNGC	3 cut(s)	103, 307, 568
Bme1390I	CCNGG	1 cut(s)	694
Bme18I	GGWCC	1 cut(s)	227
BmeRI	GACNNNNNGTC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	694
BmsI	GCATC	2 cut(s)	82, 292
BpuEI	CTTGAG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 331, 337, 361, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	694
BseGI	GGATG	3 cut(s)	50, 63, 97
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	88, 317, 553
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	30, 75
BsmFI	GGGAC	1 cut(s)	560
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	694
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	462, 474
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	50, 63, 97
BstMAI	GTCTC	2 cut(s)	30, 75
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	694
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	692
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	88, 317, 553
BstXI	CCANNNNNNTGG	2 cut(s)	175, 543
BsuI	GTATCC	2 cut(s)	522, 585
BtsCI	GGATG	3 cut(s)	50, 63, 97
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	3 cut(s)	295, 422, 620
CviJI	RGCY	3 cut(s)	101, 175, 704
CviKI_1	RGCY	3 cut(s)	101, 175, 704
DdeI	CTNAG	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	462, 474
Eam1105I	GACNNNNNGTC	1 cut(s)	607
EarI	CTCTTC	2 cut(s)	462, 474
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	241, 462
EcoRII	CCWGG	1 cut(s)	692
FaeI	CATG	3 cut(s)	298, 425, 623
FaiI	YATR	8 cut(s)	57, 78, 156, 296, 365, 423, 621, 707
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	3 cut(s)	294, 421, 619
Fnu4HI	GCNGC	3 cut(s)	102, 306, 567
FokI	GGATG	3 cut(s)	50, 57, 104
Fsp4HI	GCNGC	3 cut(s)	102, 306, 567
FspBI	CTAG	2 cut(s)	186, 386
GluI	GCNGC	3 cut(s)	102, 306, 567
Hin1II	CATG	3 cut(s)	298, 425, 623
HinfI	GANTC	3 cut(s)	206, 371, 389
Hpy166II	GTNNAC	2 cut(s)	61, 656
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	2 cut(s)	186, 671
Hpy8I	GTNNAC	2 cut(s)	61, 656
HpyAV	CCTTC	3 cut(s)	91, 226, 327
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	305, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	298, 425, 623
LpnPI	CCDG	8 cut(s)	161, 181, 243, 381, 450, 679, 686, 706
Lsp1109I	GCAGC	3 cut(s)	88, 317, 553
LweI	GCATC	2 cut(s)	82, 292
MaeI	CTAG	2 cut(s)	186, 386
MaeIII	GTNAC	2 cut(s)	122, 143
MboII	GAAGA	7 cut(s)	247, 467, 476, 479, 488, 491, 674
MluCI	AATT	4 cut(s)	36, 86, 522, 550
MnlI	CCTC	8 cut(s)	3, 288, 331, 475, 484, 501, 510, 543
MslI	CAYNNNNRTG	1 cut(s)	541
MspR9I	CCNGG	1 cut(s)	694
MvaI	CCWGG	1 cut(s)	694
MwoI	GCNNNNNNNGC	1 cut(s)	101
NlaIII	CATG	3 cut(s)	298, 425, 623
NspI	RCATGY	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	206, 371, 389
PkrI	GCNGC	3 cut(s)	103, 307, 568
Psp6I	CCWGG	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	692
PspPI	GGNCC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	541
SatI	GCNGC	3 cut(s)	102, 306, 567
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	694
SfaNI	GCATC	2 cut(s)	82, 292
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	36, 86, 522, 550
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	186, 386
StyD4I	CCNGG	1 cut(s)	692
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	520
TasI	AATT	4 cut(s)	36, 86, 522, 550
TfiI	GAWTC	3 cut(s)	206, 371, 389
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	3 cut(s)	101, 305, 566
TspDTI	ATGAA	5 cut(s)	17, 219, 261, 311, 438
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	36
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	186, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.