RchiOBHm_Chr7g0182361
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002557
Physical Location & Seq
Reverse (-)
3638562 .. 3639464
903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16268

Sequence Viewer

Length: 402 bp
ATGACAACTTCAGGTACACCTTGTTCTTTGCTATCGAGTAACTCTGACTTTAATTGGAAGGATATGTGGATAATTGATTCAGGTGCAACGGACCATATGACTAATAACCCTAGCAATATTCACCATTTAACCCCAGTTCGCCGGTCTGGCGTAACTAATGCCAATGGCGATTCTTATCCCATTACTGGAGCTGGATCTGTTACTCTTACAAAATCCATTACCCTTGATACAGTGTTACTTGTTCCTTCCCTATCTCATAATCTCTTGTCTGTCAAACAGATAACAAAACAATTTTATTGTTGTGTAATTCTTTACCCGTGGTGTTGTATATTTCAGGACATCCTAACAGGGGAAATCATTGGGCGGGGTATTGAGAAGGGGGGTTATACTACATGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 rve

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

6.87

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 23 - 97 2.2e-18 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 364
AclWI GGATC 1 cut(s) 202
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 185, 349
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AlwI GGATC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 1 cut(s) 91
BfaI CTAG 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 349
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 134, 190
Bse8I GATNNNNATC 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 339
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 185, 349
BseNI ACTGG 2 cut(s) 134, 190
BsiSI CCGG 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 185, 349
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 1 cut(s) 364
BspPI GGATC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 2 cut(s) 134, 190
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 232
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 15
CviAII CATG 1 cut(s) 393
CviJI RGCY 1 cut(s) 191
CviKI_1 RGCY 1 cut(s) 191
CviQI GTAC 1 cut(s) 15
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 91
FaeI CATG 1 cut(s) 396
FaiI YATR 7 cut(s) 65, 96, 98, 258, 329, 387, 394
FatI CATG 1 cut(s) 392
FauI CCCGC 1 cut(s) 357
FauNDI CATATG 1 cut(s) 96
FokI GGATG 1 cut(s) 326
FspBI CTAG 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 207
HapII CCGG 1 cut(s) 142
Hin1II CATG 1 cut(s) 396
HinfI GANTC 2 cut(s) 77, 170
HpaII CCGG 1 cut(s) 142
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 52, 255, 370
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 396
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 8 cut(s) 66, 132, 147, 155, 171, 177, 320, 333
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 4 cut(s) 38, 151, 199, 234
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MflI RGATCY 1 cut(s) 194
MluCI AATT 4 cut(s) 52, 72, 290, 306
MseI TTAA 2 cut(s) 51, 128
MslI CAYNNNNRTG 1 cut(s) 397
MspI CCGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeI CATATG 1 cut(s) 96
NdeII GATC 1 cut(s) 194
NlaIII CATG 1 cut(s) 396
PfeI GAWTC 2 cut(s) 77, 170
PspPI GGNCC 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 397
SaqAI TTAA 2 cut(s) 51, 128
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 91
SetI ASST 4 cut(s) 16, 22, 85, 193
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 397
Sse9I AATT 4 cut(s) 52, 72, 290, 306
SsiI CCGC 1 cut(s) 364
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 35
TasI AATT 4 cut(s) 52, 72, 290, 306
TfiI GAWTC 2 cut(s) 77, 170
Tru1I TTAA 2 cut(s) 51, 128
Tru9I TTAA 2 cut(s) 51, 128
TscAI CASTG 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 91
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.