Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002557

Physical Location & Seq

Genomic Coordinates Forward (+)

11369159 .. 11372381

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTGCAGTAACTTGTGAACTTACATGGTTAAGATACTTGTTGAGGGACTTGCATGTAACTCATCCTAATCCAACAAGATTATTTTGTGATAATCAGGCTGCTTTTTACATTGCAACAAATCCCGTGTTCCACGAGCGGACCAAGCATATTGAGCTTGACTGTCATACTATTCCCGAGAAAATTCAAAGGGGAGAAATTAGAACGGCCTATGTACAAACAGGGGAACAAATTGCTGACATGTTCACTCAGCCATTGCGGGCACCTGTTTTCCGTTCACACCTTGGCAAGTTGGTTGGAAGTTTTAAATCTACTTCCATGGACAGGTCATGCTGGGCACCATCCTTGGGATCTACAAGCCAGCTGCGGTATTCCACAATAGGAGCTATTACTATGACACCACTTCTTACCAAGCTTCTTGCTGGCCAGCTTGTTCCAGTTGATGCCGCAGTAACACTTCCTAGACTAATTGGAGAAATGTTACAGATAAAAGAAAATATACGGAAACAGTCTGTCTACGCTGACATTTCCTCCCCACCATCTTTGCAGGGCCTGGCACTCAGTACTTTCCAGGTTGTTTTAATGCCAACAATCGTTGGAGTACTGGCAAACGAGTTCTTTCCCAAATTCACTTCAAAGATAGCTGCGGTGACACCTTCAATTGGAGTAATGCTCACCACTCTACTCTGTGCCAGCCCGATCGGGCAAGTTTCTGAAGTCTTGAAAACACAAGGAGCTCAACTAATACTCCCGGTGGCTGTTCTACGCGGTGCTGCATTTGGTGTTGGTTATTGGATTTCAAAATTATCGTTCGGTGAATCTACTTCTCGTACCATTTCCATAGAGTGGGGGATGCAGAGCTCAGCACTTTGGATTTTTACTAGCTCAAAAGCATTTTACAAACCCTCTTGTTGCCGTCCCTTCTGCTGTCAGCGTTGTTTGCATGGCGGGGACTTGGTTGGAGTGCTCTTGCTGTCTTCTGGAGAAACAGCCCAATTCCCATTGATGACAAGGATGATTTCATGGAATTTAAAATGCTTGGCCTCCCATTTTGTCTGGGTATTTTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0006849 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

358

Amino Acids

39.38

Weight (kDa)

9.15

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	181 - 242	4.1e-08	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48720
fragaria_vesca	FvH4_2g28692 FvH4_5g18842 FvH4_6g09151
malus_domestica	MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1
prunus_persica	Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1
pyrus_communis	pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240
rosa_chinensis	RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371
rosa_roxburghii	Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260
rosa_samantha	Rh3BG173000
rosa_wichuraiana	Rw4G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	262, 337
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	768
AciI	CCGC	7 cut(s)	139, 259, 367, 447, 647, 768, 948
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	3 cut(s)	183, 626, 1027
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	4 cut(s)	216, 565, 603, 832
AfiI	CCNNNNNNNGG	4 cut(s)	324, 347, 662, 846
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	5 cut(s)	188, 636, 660, 724, 801
AjnI	CCWGG	2 cut(s)	552, 570
AluBI	AGCT	9 cut(s)	157, 364, 386, 415, 430, 644, 737, 861, 885
AluI	AGCT	9 cut(s)	157, 364, 386, 415, 430, 644, 737, 861, 885
Alw21I	GWGCWC	3 cut(s)	739, 863, 969
AlwI	GGATC	1 cut(s)	358
AlwNI	CAGNNNCTG	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	207, 424, 550, 1041
ApeKI	GCWGC	5 cut(s)	5, 101, 364, 644, 773
ApoI	RAATTY	3 cut(s)	183, 626, 1027
AspS9I	GGNCC	2 cut(s)	141, 550
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	3 cut(s)	661, 667, 827
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	141
BaeGI	GKGCMC	2 cut(s)	265, 340
BalI	TGGCCA	1 cut(s)	426
BanI	GGYRCC	2 cut(s)	262, 337
BanII	GRGCYC	2 cut(s)	739, 863
BauI	CACGAG	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	969
Bbv12I	GWGCWC	3 cut(s)	739, 863, 969
BbvI	GCAGC	4 cut(s)	88, 351, 631, 760
BccI	CCATC	2 cut(s)	349, 547
BceAI	ACGGC	2 cut(s)	222, 900
BciT130I	CCWGG	2 cut(s)	554, 572
BcnI	CCSGG	1 cut(s)	752
BfaI	CTAG	2 cut(s)	462, 882
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	6 cut(s)	6, 102, 365, 447, 645, 774
BlpI	GCTNAGC	1 cut(s)	862
BlsI	GCNGC	6 cut(s)	7, 103, 366, 448, 646, 775
BmcAI	AGTACT	2 cut(s)	565, 603
Bme1390I	CCNGG	3 cut(s)	554, 572, 752
Bme18I	GGWCC	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	141, 550
BmiI	GGNNCC	2 cut(s)	264, 339
BmrFI	CCNGG	3 cut(s)	554, 572, 752
BmsI	GCATC	2 cut(s)	433, 843
BpiI	GAAGAC	1 cut(s)	969
BplI	GAGNNNNNCTC	2 cut(s)	657, 689
BpmI	CTGGAG	1 cut(s)	1002
Bpu1102I	GCTNAGC	1 cut(s)	862
BpuMI	CCSGG	1 cut(s)	752
BsaJI	CCNNGG	3 cut(s)	283, 318, 345
BsaXI	ACNNNNNCTCC	4 cut(s)	515, 545, 732, 762
Bsc4I	CCNNNNNNNGG	4 cut(s)	324, 347, 662, 846
Bse1I	ACTGG	2 cut(s)	437, 609
Bse3DI	GCAATG	2 cut(s)	111, 254
BseBI	CCWGG	2 cut(s)	554, 572
BseDI	CCNNGG	3 cut(s)	283, 318, 345
BseGI	GGATG	4 cut(s)	64, 341, 858, 1020
BseLI	CCNNNNNNNGG	4 cut(s)	324, 347, 662, 846
BseMI	GCAATG	2 cut(s)	111, 254
BseMII	CTCAG	3 cut(s)	263, 574, 876
BseNI	ACTGG	2 cut(s)	437, 609
BseSI	GKGCMC	2 cut(s)	265, 340
BseXI	GCAGC	4 cut(s)	88, 351, 631, 760
BseYI	CCCAGC	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	768
Bsh1285I	CGRYCG	1 cut(s)	702
BshFI	GGCC	4 cut(s)	209, 426, 552, 1043
BshNI	GGYRCC	2 cut(s)	262, 337
BsiEI	CGRYCG	1 cut(s)	702
BsiHKAI	GWGCWC	3 cut(s)	739, 863, 969
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	752
BslFI	GGGAC	3 cut(s)	62, 903, 965
BslI	CCNNNNNNNGG	4 cut(s)	324, 347, 662, 846
BsmFI	GGGAC	3 cut(s)	62, 903, 965
BsnI	GGCC	4 cut(s)	209, 426, 552, 1043
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	5 cut(s)	265, 340, 739, 863, 969
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	350, 699
Bsp1720I	GCTNAGC	1 cut(s)	862
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	7 cut(s)	139, 259, 367, 447, 647, 768, 948
BspANI	GGCC	4 cut(s)	209, 426, 552, 1043
BspCNI	CTCAG	3 cut(s)	262, 573, 875
BspFNI	CGCG	1 cut(s)	768
BspLI	GGNNCC	2 cut(s)	264, 339
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	358
BspT107I	GGYRCC	2 cut(s)	262, 337
BsrBI	CCGCTC	1 cut(s)	139
BsrDI	GCAATG	2 cut(s)	111, 254
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	437, 609
BssECI	CCNNGG	3 cut(s)	283, 318, 345
BssMI	GATC	2 cut(s)	350, 699
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	3 cut(s)	283, 318, 345
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	554, 572
Bst4CI	ACNGT	2 cut(s)	164, 510
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	5 cut(s)	261, 362, 424, 428, 694
BstDEI	CTNAG	3 cut(s)	249, 560, 862
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	4 cut(s)	64, 341, 858, 1020
BstFNI	CGCG	1 cut(s)	768
BstKTI	GATC	2 cut(s)	353, 702
BstMBI	GATC	2 cut(s)	350, 699
BstMCI	CGRYCG	1 cut(s)	702
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 154, 940
BstNI	CCWGG	2 cut(s)	554, 572
BstNSI	RCATGY	2 cut(s)	59, 244
BstSCI	CCNGG	3 cut(s)	552, 570, 750
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	2 cut(s)	265, 340
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	4 cut(s)	88, 351, 631, 760
BstV2I	GAAGAC	1 cut(s)	969
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	4 cut(s)	209, 426, 552, 1043
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	4 cut(s)	64, 341, 858, 1020
Cac8I	GCNNGC	5 cut(s)	261, 362, 424, 428, 694
CaiI	CAGNNNCTG	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	141, 550
Csp6I	GTAC	4 cut(s)	215, 564, 602, 831
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	7 cut(s)	27, 56, 241, 319, 330, 944, 1023
CviQI	GTAC	4 cut(s)	215, 564, 602, 831
DdeI	CTNAG	3 cut(s)	249, 560, 862
DpnI	GATC	2 cut(s)	352, 701
DpnII	GATC	2 cut(s)	350, 699
DraI	TTTAAA	2 cut(s)	307, 1032
EaeI	YGGCCR	1 cut(s)	424
Ecl136II	GAGCTC	2 cut(s)	737, 861
Eco130I	CCWWGG	3 cut(s)	283, 318, 345
Eco24I	GRGCYC	2 cut(s)	739, 863
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	2 cut(s)	737, 861
Eco57I	CTGAAG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	2 cut(s)	737, 861
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	552, 570
EcoT14I	CCWWGG	3 cut(s)	283, 318, 345
EcoT38I	GRGCYC	2 cut(s)	739, 863
ErhI	CCWWGG	3 cut(s)	283, 318, 345
FaeI	CATG	7 cut(s)	30, 59, 244, 322, 333, 947, 1026
FaqI	GGGAC	3 cut(s)	62, 903, 965
FatI	CATG	7 cut(s)	26, 55, 240, 318, 329, 943, 1022
FauI	CCCGC	2 cut(s)	252, 941
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	6 cut(s)	6, 102, 365, 447, 645, 774
FokI	GGATG	4 cut(s)	51, 328, 865, 1027
FriOI	GRGCYC	2 cut(s)	739, 863
Fsp4HI	GCNGC	6 cut(s)	6, 102, 365, 447, 645, 774
FspBI	CTAG	2 cut(s)	462, 882
GluI	GCNGC	6 cut(s)	6, 102, 365, 447, 645, 774
GsaI	CCCAGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	1002
HaeIII	GGCC	4 cut(s)	209, 426, 552, 1043
HapII	CCGG	1 cut(s)	752
Hin1II	CATG	7 cut(s)	30, 59, 244, 322, 333, 947, 1026
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	1 cut(s)	818
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	3 cut(s)	661, 667, 827
Hpy166II	GTNNAC	4 cut(s)	20, 246, 278, 517
Hpy188I	TCNGA	1 cut(s)	715
Hpy188III	TCNNGA	3 cut(s)	176, 721, 981
Hpy8I	GTNNAC	4 cut(s)	20, 246, 278, 517
HpyAV	CCTTC	2 cut(s)	666, 931
HpyCH4III	ACNGT	2 cut(s)	164, 510
HpyCH4V	TGCA	7 cut(s)	8, 55, 116, 547, 776, 856, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 154, 940
HpyF3I	CTNAG	3 cut(s)	249, 560, 862
Hsp92II	CATG	7 cut(s)	30, 59, 244, 322, 333, 947, 1026
Kzo9I	GATC	2 cut(s)	350, 699
LmnI	GCTCC	2 cut(s)	383, 734
Lsp1109I	GCAGC	4 cut(s)	88, 351, 631, 760
LweI	GCATC	2 cut(s)	433, 843
MaeI	CTAG	2 cut(s)	462, 882
MaeIII	GTNAC	5 cut(s)	10, 58, 451, 480, 649
MalI	GATC	2 cut(s)	352, 701
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	350, 699
MboII	GAAGA	1 cut(s)	969
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	5 cut(s)	265, 340, 739, 863, 969
MlsI	TGGCCA	1 cut(s)	426
MluNI	TGGCCA	1 cut(s)	426
MmeI	TCCRAC	4 cut(s)	98, 277, 577, 940
MnlI	CCTC	4 cut(s)	39, 541, 916, 1054
Mox20I	TGGCCA	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	6 cut(s)	32, 306, 581, 1031, 1068, 1072
Msp20I	TGGCCA	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	3 cut(s)	554, 572, 752
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	2 cut(s)	554, 572
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	3 cut(s)	145, 154, 940
NciI	CCSGG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	2 cut(s)	350, 699
NlaIII	CATG	7 cut(s)	30, 59, 244, 322, 333, 947, 1026
NlaIV	GGNNCC	2 cut(s)	264, 339
NmuCI	GTSAC	1 cut(s)	649
NspI	RCATGY	2 cut(s)	59, 244
PacI	TTAATTAA	1 cut(s)	1072
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	818
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	6 cut(s)	7, 103, 366, 448, 646, 775
Ple19I	CGATCG	1 cut(s)	702
PscI	ACATGT	1 cut(s)	240
Psp124BI	GAGCTC	2 cut(s)	739, 863
Psp6I	CCWGG	2 cut(s)	552, 570
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	2 cut(s)	552, 570
PspN4I	GGNNCC	2 cut(s)	264, 339
PspPI	GGNCC	2 cut(s)	141, 550
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	4 cut(s)	216, 565, 603, 832
RsaNI	GTAC	4 cut(s)	215, 564, 602, 831
SacI	GAGCTC	2 cut(s)	739, 863
SaqAI	TTAA	6 cut(s)	32, 306, 581, 1031, 1068, 1072
SatI	GCNGC	6 cut(s)	6, 102, 365, 447, 645, 774
Sau3AI	GATC	2 cut(s)	350, 699
Sau96I	GGNCC	2 cut(s)	141, 550
ScaI	AGTACT	2 cut(s)	565, 603
ScrFI	CCNGG	3 cut(s)	554, 572, 752
SduI	GDGCHC	5 cut(s)	265, 340, 739, 863, 969
SfaNI	GCATC	2 cut(s)	433, 843
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	141
SsiI	CCGC	7 cut(s)	139, 259, 367, 447, 647, 768, 948
SspMI	CTAG	2 cut(s)	462, 882
SstI	GAGCTC	2 cut(s)	739, 863
StyD4I	CCNGG	3 cut(s)	552, 570, 750
StyI	CCWWGG	3 cut(s)	283, 318, 345
TaaI	ACNGT	2 cut(s)	164, 510
TatI	WGTACW	3 cut(s)	214, 563, 601
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	818
Tru1I	TTAA	6 cut(s)	32, 306, 581, 1031, 1068, 1072
Tru9I	TTAA	6 cut(s)	32, 306, 581, 1031, 1068, 1072
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	5 cut(s)	5, 101, 364, 644, 773
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	1 cut(s)	1011
TspGWI	ACGGA	2 cut(s)	263, 517
Van91I	CCANNNNNTGG	1 cut(s)	846
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	3 cut(s)	183, 626, 1027
XceI	RCATGY	2 cut(s)	59, 244
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	2 cut(s)	462, 882
ZrmI	AGTACT	2 cut(s)	565, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.