transposition
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48720 |
| fragaria_vesca | FvH4_2g28692 FvH4_5g18842 FvH4_6g09151 |
| malus_domestica | MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1 |
| prunus_persica | Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1 |
| pyrus_communis | pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240 |
| rosa_chinensis | RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371 |
| rosa_roxburghii | Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260 |
| rosa_samantha | Rh3BG173000 |
| rosa_wichuraiana | Rw4G008490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 77 |
| AgsI | TTSAA | 1 cut(s) | 158 |
| AoxI | GGCC | 1 cut(s) | 112 |
| ApeKI | GCWGC | 1 cut(s) | 32 |
| BbvI | GCAGC | 1 cut(s) | 44 |
| BfaI | CTAG | 1 cut(s) | 29 |
| BglII | AGATCT | 1 cut(s) | 10 |
| BisI | GCNGC | 1 cut(s) | 33 |
| BlsI | GCNGC | 1 cut(s) | 34 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 99, 131 |
| BseMII | CTCAG | 1 cut(s) | 21 |
| BseXI | GCAGC | 1 cut(s) | 44 |
| BshFI | GGCC | 1 cut(s) | 114 |
| BsnI | GGCC | 1 cut(s) | 114 |
| Bsp143I | GATC | 2 cut(s) | 10, 72 |
| BspANI | GGCC | 1 cut(s) | 114 |
| BspCNI | CTCAG | 1 cut(s) | 20 |
| BssMI | GATC | 2 cut(s) | 10, 72 |
| Bst4CI | ACNGT | 1 cut(s) | 58 |
| BstDEI | CTNAG | 1 cut(s) | 7 |
| BstKTI | GATC | 2 cut(s) | 13, 75 |
| BstMBI | GATC | 2 cut(s) | 10, 72 |
| BstV1I | GCAGC | 1 cut(s) | 44 |
| BstX2I | RGATCY | 1 cut(s) | 10 |
| BstYI | RGATCY | 1 cut(s) | 10 |
| BsuRI | GGCC | 1 cut(s) | 114 |
| CviJI | RGCY | 1 cut(s) | 114 |
| CviKI_1 | RGCY | 1 cut(s) | 114 |
| DdeI | CTNAG | 1 cut(s) | 7 |
| DpnI | GATC | 2 cut(s) | 12, 74 |
| DpnII | GATC | 2 cut(s) | 10, 72 |
| Eco147I | AGGCCT | 1 cut(s) | 114 |
| Eco57I | CTGAAG | 1 cut(s) | 77 |
| EcoT22I | ATGCAT | 1 cut(s) | 178 |
| FaiI | YATR | 1 cut(s) | 77 |
| Fnu4HI | GCNGC | 1 cut(s) | 33 |
| Fsp4HI | GCNGC | 1 cut(s) | 33 |
| FspBI | CTAG | 1 cut(s) | 29 |
| GluI | GCNGC | 1 cut(s) | 33 |
| HaeIII | GGCC | 1 cut(s) | 114 |
| HinfI | GANTC | 1 cut(s) | 84 |
| Hpy188I | TCNGA | 2 cut(s) | 10, 46 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 1 cut(s) | 176 |
| HpyF3I | CTNAG | 1 cut(s) | 7 |
| Kzo9I | GATC | 2 cut(s) | 10, 72 |
| LpnPI | CCDG | 1 cut(s) | 80 |
| Lsp1109I | GCAGC | 1 cut(s) | 44 |
| MaeI | CTAG | 1 cut(s) | 29 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MalI | GATC | 2 cut(s) | 12, 74 |
| MboI | GATC | 2 cut(s) | 10, 72 |
| MboII | GAAGA | 2 cut(s) | 83, 93 |
| MflI | RGATCY | 1 cut(s) | 10 |
| MnlI | CCTC | 2 cut(s) | 16, 125 |
| Mph1103I | ATGCAT | 1 cut(s) | 178 |
| NdeII | GATC | 2 cut(s) | 10, 72 |
| NsiI | ATGCAT | 1 cut(s) | 178 |
| PceI | AGGCCT | 1 cut(s) | 114 |
| PfeI | GAWTC | 1 cut(s) | 84 |
| PkrI | GCNGC | 1 cut(s) | 34 |
| PsuI | RGATCY | 1 cut(s) | 10 |
| SatI | GCNGC | 1 cut(s) | 33 |
| Sau3AI | GATC | 2 cut(s) | 10, 72 |
| SetI | ASST | 2 cut(s) | 8, 40 |
| SgeI | CNNG | 4 cut(s) | 41, 82, 107, 170 |
| SseBI | AGGCCT | 1 cut(s) | 114 |
| SspMI | CTAG | 1 cut(s) | 29 |
| StuI | AGGCCT | 1 cut(s) | 114 |
| TaaI | ACNGT | 1 cut(s) | 58 |
| TfiI | GAWTC | 1 cut(s) | 84 |
| TseI | GCWGC | 1 cut(s) | 32 |
| XspI | CTAG | 1 cut(s) | 29 |
| Zsp2I | ATGCAT | 1 cut(s) | 178 |