MD11G1249500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002557
Physical Location & Seq
Reverse (-)
36160089 .. 36161433
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1249500.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGTGAAGGACAAAGCATCAAGGGTGATTTTGTACCAAGGAATGAGTGATGGTGGGGAACTTTTCAAGATTTTAGTAAATGTGCTTGCCAATTCATTTGCTTCAAGGCTAAGTAGGTGTGCTGCATTATTGGGGAAGAAAATACATACTACTGTTTGGCATCAAAGGCTAGGACATCCATCTAAGGAGGTGTTGGCTGTAATGTTAAAAGATTTAAACATCTCGGTTAATAAAGATTCCTGTCAGCTTGTTTGTTCTTGTATTCAAGGGAAAATGACTAGGCAAGTAATTTCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.93

Weight (kDa)

9.62

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 46 - 92 8.8e-09 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 3 cut(s) 67, 105, 266
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 16, 37
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 44, 187
BfaI CTAG 2 cut(s) 170, 279
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmsI GCATC 2 cut(s) 26, 169
BsaJI CCNNGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 110, 183
BstF5I GGATG 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 4 cut(s) 109, 169, 197, 247
CviKI_1 RGCY 4 cut(s) 109, 169, 197, 247
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 110, 183
DraI TTTAAA 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaiI YATR 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 170, 279
GluI GCNGC 1 cut(s) 123
HinfI GANTC 1 cut(s) 236
HphI GGTGA 2 cut(s) 16, 37
Hpy188III TCNNGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 110, 183
LpnPI CCDG 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 26, 169
MaeI CTAG 2 cut(s) 170, 279
MboII GAAGA 1 cut(s) 148
MluCI AATT 2 cut(s) 91, 288
MnlI CCTC 1 cut(s) 181
MseI TTAA 3 cut(s) 206, 215, 228
MwoI GCNNNNNNNGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 124
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 206, 215, 228
SatI GCNGC 1 cut(s) 123
SetI ASST 3 cut(s) 119, 192, 249
SfaNI GCATC 2 cut(s) 26, 169
Sse9I AATT 2 cut(s) 91, 288
SspMI CTAG 2 cut(s) 170, 279
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 154
TasI AATT 2 cut(s) 91, 288
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 206, 215, 228
Tru9I TTAA 3 cut(s) 206, 215, 228
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 84
XspI CTAG 2 cut(s) 170, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.