Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002557

Physical Location & Seq

Genomic Coordinates Forward (+)

2685702 .. 2688635

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g03530.18

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGTCTACTATCCAATGTAATTCATTTACTTATATGATTACCTTGAATATTCTTAATCATATTATAGGGTATTCTCCATCAAACGGTTTGAAGGTTAGAGATCCCTTGTTGTGCATTCACTTGCCTCCATGGCTAAGTGGCTTAACCCCAACTATGTCATGGACACCCTTTGATGTAGATTCCTTAGAACTCCTTGTTGATCGCGTTCAGTGGACTCATTCTATATTAACCACCTACATGCTTGTCTTGGTATCAGTCACACCAATGACTCAAGACCAGTCACTTTCCCTAAGAGAAGACATAACACGTACTCATCTTAATGGACTGTCAATGTATACAAAACAGAATGATCTCATGAATCTAACTTCTTTAGATCACATTCTCCCAATTGAGACGGCTGAAAACAATAATCTTTACCCTTTATATTACACTAGAATAGGCACATTTCCAACAACTTTCTCATTTGGAAGTGAGGTTTTATCTTGGGCCTCAGTTAAGCAGCCCAATTTAGCTCTGTCAACAGCTGAAGCTGAGTACAAGAGTGCAACTAAAGCAACCACTCAAGTTGTGTGGTTGAGGTTTGTGCTTCAAGATTTTGGTGAAGAACAAGCTGAAGCTACTCCTATTTACTGTGATAATATATCTGCCATTGCCATGACAAGAAATCCTGTGTTCCATCAAAGAACAAAGCACATTGGAATAAGTTGTTGCAAATCAGAAGATCGACTTGCTGATATTTTCACCAAGGCACTTCCCAAAGATCATTTTTGTGCACTCAGAGAGAAGCTTGGAGTTAAACCAGCTACCAGCTTAAAGGAGTGTTGGAGCATAAGCATGGCAGCTGGTTCAACCATTCAAGGTTGCTGCAATGAAGAAGAAGAAGAAGAAACGACAAGATTAAAACATCTCAATGATGTGTATCTTGCCACGTGTCTAGTTAGTATTGGCAACGACTATATAGCTGATTTTCAGCTGAGTTTATTGGCAACGTTCTTCTCTGATATCCCAACTTTGCATTCATTTCAATTTCTTTTGACCCGATTGAAATTGGTGACAGACAAGGGGTTTGAGTATGGTAAATCTTGGCTCGAAGGGGTGGAAAAGGTGTCCATGCCACCCAACCTGAAGAAGAGCAAGCATAGGGTGGCTGTAATGATGGATCTTGTCGAGGGGAAAATCAAAGTGTATGACTCATTACGGATTGCAACCAATGCACGACAAGCGATGGAAAAATTGGCTCCTATTGGGGAAGGAAAGACCTTTTCAATCGTGGTTAGAGTGATTGGCATGGTAGTCATTTATTTTACTCAATTGATAATACGTTTCGGTTCTAAAATGTTATGTGTTTGCGCATGTTGTCAACTGAACTACCTTTGGATGAATTGCAACATGTTGCATGGCATCACAATGTGTAAATATTTTTTGAATGATCACTGCATTTATTTAAAATTGTATATGTTAGTCTATGAGTTGTTGGACAAGCTTTGCAAGCCTTTTAATGATACGATTATTCGAAAGTTATTGTGCGTTTTTCAATTAGTTTCATCAGTTAGGGCATGGTTCAACAATTTGCCATCACATCATGAACACTTAAAGAAAGCAGTTCATATTTACAACAGCAAGGCTAGAATGTTGCCTTTTTGGATGATGCCTTGGATGACTGCTTGGGTACTGCCAACTTCCGTTACTGCACTCGCTGGTATTTTTTGGATGAAGCCTTTAAAAACTCATCTATTTTTAAAGATCGAACTTAAGCCCAAATTTAAAATTTTTACACTCATGCCACTCATACTTTATGGTCCCTTTTCCAAATTCCTAAATTTATGCCAAATTAAAAGTAGTAGAAAAAGTCAAACTAGAAAAGTAGTTTTTTTTTTTCGTAAATTAGTTTGTTCCAATTATTTAAAAAAAAAATACTACACCTATATTATATATTTTGAATCAAATAACATTCCTCTAACTTGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

657

Amino Acids

75.4

Weight (kDa)

9.01

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48720
fragaria_vesca	FvH4_2g28692 FvH4_5g18842 FvH4_6g09151
malus_domestica	MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1
prunus_persica	Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1
pyrus_communis	pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240
rosa_chinensis	RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371
rosa_roxburghii	Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260
rosa_samantha	Rh3BG173000
rosa_wichuraiana	Rw4G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1351
AccI	GTMKAC	2 cut(s)	5, 335
AccII	CGCG	1 cut(s)	204
AclI	AACGTT	1 cut(s)	989
AclWI	GGATC	2 cut(s)	95, 1167
AcsI	RAATTY	4 cut(s)	1760, 1767, 1811, 1819
AcuI	CTGAAG	3 cut(s)	546, 633, 1145
AcvI	CACGTG	1 cut(s)	930
AdeI	CACNNNGTG	1 cut(s)	1410
AfaI	GTAC	3 cut(s)	310, 536, 1671
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	1751
AflIII	ACRYGT	3 cut(s)	305, 929, 1389
AjuI	GAANNNNNNNTTGG	2 cut(s)	1000, 1032
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	1 cut(s)	386
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	2 cut(s)	95, 1167
AoxI	GGCC	1 cut(s)	486
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	499, 839, 864
ApoI	RAATTY	4 cut(s)	1760, 1767, 1811, 1819
ArsI	GACNNNNNNTTYG	2 cut(s)	1049, 1081
AspLEI	GCGC	1 cut(s)	1352
AspS9I	GGNCC	2 cut(s)	486, 1799
AsuHPI	GGTGA	3 cut(s)	611, 733, 1063
AsuII	TTCGAA	1 cut(s)	1513
AvaII	GGWCC	1 cut(s)	1799
BaeGI	GKGCMC	1 cut(s)	775
BbrPI	CACGTG	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	3 cut(s)	511, 851, 851
BccI	CCATC	5 cut(s)	85, 684, 1150, 1219, 1582
BceAI	ACGGC	1 cut(s)	411
BclI	TGATCA	1 cut(s)	1429
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	4 cut(s)	432, 935, 1626, 1857
BfrI	CTTAAG	1 cut(s)	1751
BglI	GCCNNNNNGGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	500, 840, 865
BlsI	GCNGC	3 cut(s)	501, 841, 866
Bme18I	GGWCC	1 cut(s)	1799
BmgT120I	GGNCC	2 cut(s)	486, 1799
BmiI	GGNNCC	2 cut(s)	1239, 1801
BmsI	GCATC	2 cut(s)	1410, 1638
BpiI	GAAGAC	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	1513
BpuEI	CTTGAG	2 cut(s)	255, 546
BsaAI	YACGTR	2 cut(s)	308, 930
BsaBI	GATNNNNATC	1 cut(s)	918
BsaJI	CCNNGG	3 cut(s)	128, 744, 1652
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	2 cut(s)	648, 874
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	3 cut(s)	128, 744, 1652
BseGI	GGATG	4 cut(s)	1383, 1650, 1662, 1716
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	2 cut(s)	648, 874
BseMII	CTCAG	4 cut(s)	504, 522, 790, 965
BseNI	ACTGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	3 cut(s)	511, 851, 851
BsgI	GTGCAG	1 cut(s)	1674
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	775
BslFI	GGGAC	1 cut(s)	1785
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	1785
BsmI	GAATGC	2 cut(s)	114, 1015
BsnI	GGCC	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	1513
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp143I	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
Bsp19I	CCATGG	1 cut(s)	128
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	4 cut(s)	503, 523, 789, 966
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	2 cut(s)	354, 1582
BspLI	GGNNCC	2 cut(s)	1239, 1801
BspPI	GGATC	2 cut(s)	95, 1167
BspQI	GCTCTTC	1 cut(s)	1124
BspT104I	TTCGAA	1 cut(s)	1513
BspTI	CTTAAG	1 cut(s)	1751
BsrDI	GCAATG	2 cut(s)	648, 874
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	128, 744, 1652
BssMI	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
BssNAI	GTATAC	1 cut(s)	336
BssT1I	CCWWGG	3 cut(s)	128, 744, 1652
Bst1107I	GTATAC	1 cut(s)	336
Bst4CI	ACNGT	3 cut(s)	86, 327, 632
Bst6I	CTCTTC	1 cut(s)	1124
BstAFI	CTTAAG	1 cut(s)	1751
BstAPI	GCANNNNNTGC	1 cut(s)	1211
BstBAI	YACGTR	2 cut(s)	308, 930
BstBI	TTCGAA	1 cut(s)	1513
BstC8I	GCNNGC	2 cut(s)	1136, 1490
BstDEI	CTNAG	7 cut(s)	134, 184, 290, 490, 531, 776, 974
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	4 cut(s)	1383, 1650, 1662, 1716
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	1352
BstKTI	GATC	9 cut(s)	103, 202, 352, 376, 724, 763, 1162, 1432, 1746
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 551, 1211, 1220, 1489
BstNSI	RCATGY	3 cut(s)	241, 1356, 1393
BstSLI	GKGCMC	1 cut(s)	775
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	511, 851, 851
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	100, 1159
BstYI	RGATCY	2 cut(s)	100, 1159
BstZ17I	GTATAC	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	1238
BtsCI	GGATG	4 cut(s)	1383, 1650, 1662, 1716
BtsI	GCAGTG	1 cut(s)	1432
BtsIMutI	CAGTG	2 cut(s)	215, 1432
Cac8I	GCNNGC	2 cut(s)	1136, 1490
CciI	TCATGA	2 cut(s)	354, 1582
CfoI	GCGC	1 cut(s)	1352
Cfr13I	GGNCC	2 cut(s)	486, 1799
Csp6I	GTAC	3 cut(s)	309, 535, 1670
CspCI	CAANNNNNGTGG	4 cut(s)	547, 551, 582, 586
CviQI	GTAC	3 cut(s)	309, 535, 1670
DdeI	CTNAG	7 cut(s)	134, 184, 290, 490, 531, 776, 974
DpnI	GATC	9 cut(s)	102, 201, 351, 375, 723, 762, 1161, 1431, 1745
DpnII	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
DraI	TTTAAA	5 cut(s)	1446, 1722, 1740, 1765, 1905
DraIII	CACNNNGTG	1 cut(s)	1410
Eam1104I	CTCTTC	1 cut(s)	1124
EarI	CTCTTC	1 cut(s)	1124
Eco130I	CCWWGG	3 cut(s)	128, 744, 1652
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	1 cut(s)	1799
Eco57I	CTGAAG	3 cut(s)	546, 633, 1145
Eco72I	CACGTG	1 cut(s)	930
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	3 cut(s)	128, 744, 1652
ErhI	CCWWGG	3 cut(s)	128, 744, 1652
Esp3I	CGTCTC	1 cut(s)	386
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	1 cut(s)	1785
FbaI	TGATCA	1 cut(s)	1429
FblI	GTMKAC	2 cut(s)	5, 335
Fnu4HI	GCNGC	3 cut(s)	500, 840, 865
FokI	GGATG	4 cut(s)	1390, 1657, 1669, 1723
Fsp4HI	GCNGC	3 cut(s)	500, 840, 865
FspBI	CTAG	4 cut(s)	432, 935, 1626, 1857
FspI	TGCGCA	1 cut(s)	1351
GlaI	GCGC	1 cut(s)	1351
GluI	GCNGC	3 cut(s)	500, 840, 865
HaeIII	GGCC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	1352
Hin6I	GCGC	1 cut(s)	1350
HinP1I	GCGC	1 cut(s)	1350
HincII	GTYRAC	2 cut(s)	519, 1361
HindII	GTYRAC	2 cut(s)	519, 1361
HindIII	AAGCTT	2 cut(s)	785, 1481
HinfI	GANTC	6 cut(s)	179, 214, 268, 358, 1190, 1940
HphI	GGTGA	3 cut(s)	611, 733, 1063
Hpy166II	GTNNAC	6 cut(s)	6, 213, 336, 519, 773, 1361
Hpy188I	TCNGA	3 cut(s)	718, 779, 1000
Hpy188III	TCNNGA	4 cut(s)	272, 355, 590, 1583
Hpy8I	GTNNAC	6 cut(s)	6, 213, 336, 519, 773, 1361
HpyAV	CCTTC	3 cut(s)	85, 1085, 1244
HpyCH4III	ACNGT	3 cut(s)	86, 327, 632
HpyCH4IV	ACGT	4 cut(s)	307, 929, 989, 1321
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 551, 1211, 1220, 1489
HpyF3I	CTNAG	7 cut(s)	134, 184, 290, 490, 531, 776, 974
HpySE526I	ACGT	4 cut(s)	307, 929, 989, 1321
HspAI	GCGC	1 cut(s)	1350
Ksp22I	TGATCA	1 cut(s)	1429
Kzo9I	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
LguI	GCTCTTC	1 cut(s)	1124
LmnI	GCTCC	2 cut(s)	825, 1243
LpnPI	CCDG	7 cut(s)	290, 681, 813, 820, 828, 1136, 1683
Lsp1109I	GCAGC	3 cut(s)	511, 851, 851
LweI	GCATC	2 cut(s)	1410, 1638
MaeI	CTAG	4 cut(s)	432, 935, 1626, 1857
MaeII	ACGT	4 cut(s)	307, 929, 989, 1321
MaeIII	GTNAC	4 cut(s)	256, 279, 1051, 1684
MalI	GATC	9 cut(s)	102, 201, 351, 375, 723, 762, 1161, 1431, 1745
MboI	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
MfeI	CAATTG	2 cut(s)	387, 1310
MflI	RGATCY	2 cut(s)	100, 1159
MhlI	GDGCHC	1 cut(s)	775
MlyI	GAGTC	3 cut(s)	208, 262, 1184
MmeI	TCCRAC	3 cut(s)	473, 803, 1455
MnlI	CCTC	6 cut(s)	135, 466, 499, 570, 1162, 1965
MslI	CAYNNNNRTG	8 cut(s)	236, 263, 318, 653, 768, 833, 909, 1406
MspA1I	CMGCKG	3 cut(s)	524, 842, 973
MspCI	CTTAAG	1 cut(s)	1751
MunI	CAATTG	2 cut(s)	387, 1310
Mva1269I	GAATGC	2 cut(s)	114, 1015
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	5 cut(s)	130, 551, 1211, 1220, 1489
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
NlaIV	GGNNCC	2 cut(s)	1239, 1801
NmuCI	GTSAC	3 cut(s)	256, 279, 1051
NsbI	TGCGCA	1 cut(s)	1351
NspI	RCATGY	3 cut(s)	241, 1356, 1393
NspV	TTCGAA	1 cut(s)	1513
PagI	TCATGA	2 cut(s)	354, 1582
PciI	ACATGT	1 cut(s)	1389
PciSI	GCTCTTC	1 cut(s)	1124
PctI	GAATGC	2 cut(s)	114, 1015
PfeI	GAWTC	3 cut(s)	179, 358, 1940
PkrI	GCNGC	3 cut(s)	501, 841, 866
PleI	GAGTC	3 cut(s)	208, 262, 1184
PmaCI	CACGTG	1 cut(s)	930
PmlI	CACGTG	1 cut(s)	930
PpsI	GAGTC	3 cut(s)	208, 262, 1184
Ppu21I	YACGTR	2 cut(s)	308, 930
PscI	ACATGT	1 cut(s)	1389
Psp1406I	AACGTT	1 cut(s)	989
PspCI	CACGTG	1 cut(s)	930
PspN4I	GGNNCC	2 cut(s)	1239, 1801
PspPI	GGNCC	2 cut(s)	486, 1799
PsuI	RGATCY	2 cut(s)	100, 1159
PvuII	CAGCTG	3 cut(s)	524, 842, 973
RsaI	GTAC	3 cut(s)	310, 536, 1671
RsaNI	GTAC	3 cut(s)	309, 535, 1670
RseI	CAYNNNNRTG	8 cut(s)	236, 263, 318, 653, 768, 833, 909, 1406
SapI	GCTCTTC	1 cut(s)	1124
SatI	GCNGC	3 cut(s)	500, 840, 865
Sau3AI	GATC	9 cut(s)	100, 199, 349, 373, 721, 760, 1159, 1429, 1743
Sau96I	GGNCC	2 cut(s)	486, 1799
SchI	GAGTC	3 cut(s)	208, 262, 1184
SduI	GDGCHC	1 cut(s)	775
SfaNI	GCATC	2 cut(s)	1410, 1638
SfuI	TTCGAA	1 cut(s)	1513
SinI	GGWCC	1 cut(s)	1799
SmiMI	CAYNNNNRTG	8 cut(s)	236, 263, 318, 653, 768, 833, 909, 1406
SmlI	CTYRAG	3 cut(s)	270, 561, 1751
SmoI	CTYRAG	3 cut(s)	270, 561, 1751
SspI	AATATT	2 cut(s)	49, 1418
SspMI	CTAG	4 cut(s)	432, 935, 1626, 1857
StyI	CCWWGG	3 cut(s)	128, 744, 1652
TaaI	ACNGT	3 cut(s)	86, 327, 632
TaiI	ACGT	4 cut(s)	310, 932, 992, 1324
TaqI	TCGA	5 cut(s)	724, 1089, 1167, 1513, 1746
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	179, 358, 1940
TscAI	CASTG	2 cut(s)	215, 1439
TseFI	GTSAC	3 cut(s)	256, 279, 1051
TseI	GCWGC	3 cut(s)	499, 839, 864
Tsp45I	GTSAC	3 cut(s)	256, 279, 1051
TspDTI	ATGAA	9 cut(s)	12, 371, 885, 1008, 1394, 1533, 1595, 1599, 1727
TspGWI	ACGGA	2 cut(s)	1213, 1672
TspRI	CASTG	2 cut(s)	215, 1439
Vha464I	CTTAAG	1 cut(s)	1751
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	1 cut(s)	1799
XapI	RAATTY	4 cut(s)	1760, 1767, 1811, 1819
XceI	RCATGY	3 cut(s)	241, 1356, 1393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmiI	GTMKAC	2 cut(s)	5, 335
XspI	CTAG	4 cut(s)	432, 935, 1626, 1857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.