Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002557

Physical Location & Seq

Genomic Coordinates Forward (+)

46399246 .. 46402770

Gene Structure 3525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTAGTCTCACGAGATGTCATCTTCTTTGAAACCGAGTTTCCTTATCAATCCAAACTCTCCACATCTTCGCCTTCGTCGGTCCTCCAACACCTCCTCAATTCTTTCCTTCTTTATCTACCTCACCTCACATTGATGACGATCAAATCTTCTCAAATCACTCGGAATCAAATCTTGATTCTAATCCCACAACTTCCGCCGATATCAATCCCACAAATCACTCGGAATCAAATCTTGATTCTAATCCCACAACTTCCGCCGATATTAATCCCACAAATCACTCGGAATCAAATCTTGATTCTAATCCCACAACTTCCGCTGATATCAATCCCACAAATCACTCGGATTCAAATATTCCACTATCTCATTTTCCAAATACGTCACCACCGGACTTATCCGTATCCCAAGATGCAATATCTCATTCTTCATTGTCACAACCACGAAGATCATCACGGCCAACTAGGACTCCAACCACATTGCAAGGCTTTCATATTGAGGCAGCCCTTCCTTCACGTACTGCACCATCATCTTCCACGAGCGAGGTTACTCATCCAGGTACCCCCCATTCTATTGCTCATGTTTTATCCTATGATAGACTCTCTCCTACACATAAAGCTTTCACTTGTTAACATTACACTAGAAAAGGAACCTAGATCTTTCTCTCAGCTGTCCTTGAACCACGATGGAGAGAAGCTATGGACAAAGAGATTCAAGCTCTTCAAGAAAACAAGACATGGAGTTTGGTGCCTCTCCCCCCGACAAGAAACCAATCGGTTGCAAGTGGGTTTACAAGATCAAACACAACCCGGATGGCACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

32.16

Weight (kDa)

10.14

Isoelectric Point (pI)

62.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48720
fragaria_vesca	FvH4_2g28692 FvH4_5g18842 FvH4_6g09151
malus_domestica	MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1
prunus_persica	Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1
pyrus_communis	pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240
rosa_chinensis	RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371
rosa_roxburghii	Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260
rosa_samantha	Rh3BG173000
rosa_wichuraiana	Rw4G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	556, 744
AciI	CCGC	3 cut(s)	197, 257, 317
AcoI	YGGCCR	1 cut(s)	454
AfaI	GTAC	2 cut(s)	516, 558
AgsI	TTSAA	5 cut(s)	32, 350, 676, 712, 721
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	4 cut(s)	616, 667, 694, 715
AluI	AGCT	4 cut(s)	616, 667, 694, 715
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	499
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
AseI	ATTAAT	1 cut(s)	266
Asp718I	GGTACC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	2 cut(s)	116, 374
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	2 cut(s)	556, 744
BauI	CACGAG	2 cut(s)	12, 534
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	3 cut(s)	531, 677, 804
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	1 cut(s)	554
BciVI	GTATCC	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	461, 638, 651
BfuI	GTATCC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	2 cut(s)	554, 807
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	558, 648, 746
BmrFI	CCNGG	2 cut(s)	554, 807
BmsI	GCATC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	807
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	7 cut(s)	140, 182, 206, 242, 266, 302, 326
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bse3DI	GCAATG	1 cut(s)	475
Bse8I	GATNNNNATC	7 cut(s)	140, 182, 206, 242, 266, 302, 326
BseBI	CCWGG	1 cut(s)	554
BseGI	GGATG	2 cut(s)	549, 815
BseJI	GATNNNNATC	7 cut(s)	140, 182, 206, 242, 266, 302, 326
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	677
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	456
BshNI	GGYRCC	2 cut(s)	556, 744
BsiSI	CCGG	2 cut(s)	388, 807
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	141, 445, 653, 793
BspACI	CCGC	3 cut(s)	197, 257, 317
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	558, 648, 746
BspQI	GCTCTTC	1 cut(s)	722
BspT107I	GGYRCC	2 cut(s)	556, 744
BsrDI	GCAATG	1 cut(s)	475
BssMI	GATC	4 cut(s)	141, 445, 653, 793
BssSI	CACGAG	2 cut(s)	12, 534
Bst2BI	CACGAG	2 cut(s)	12, 534
Bst2UI	CCWGG	1 cut(s)	554
Bst6I	CTCTTC	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	663
BstF5I	GGATG	2 cut(s)	549, 815
BstKTI	GATC	4 cut(s)	144, 448, 656, 796
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	141, 445, 653, 793
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	552, 805
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	653
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	549, 815
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	515, 557
CviAII	CATG	2 cut(s)	577, 734
CviJI	RGCY	7 cut(s)	456, 485, 502, 616, 667, 694, 715
CviKI_1	RGCY	7 cut(s)	456, 485, 502, 616, 667, 694, 715
CviQI	GTAC	2 cut(s)	515, 557
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	4 cut(s)	143, 447, 655, 795
DpnII	GATC	4 cut(s)	141, 445, 653, 793
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
EciI	GGCGGA	2 cut(s)	186, 246
Eco32I	GATATC	2 cut(s)	204, 324
Eco47I	GGWCC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	552
EcoRV	GATATC	2 cut(s)	204, 324
FaeI	CATG	2 cut(s)	580, 737
FaiI	YATR	6 cut(s)	491, 578, 590, 611, 697, 735
FatI	CATG	2 cut(s)	576, 733
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	1 cut(s)	536
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	3 cut(s)	461, 638, 651
GluI	GCNGC	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	2 cut(s)	388, 807
Hin1II	CATG	2 cut(s)	580, 737
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	614
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	2 cut(s)	388, 807
HphI	GGTGA	2 cut(s)	116, 374
Hpy166II	GTNNAC	2 cut(s)	628, 788
Hpy188I	TCNGA	4 cut(s)	165, 225, 285, 345
Hpy188III	TCNNGA	5 cut(s)	12, 175, 235, 295, 721
Hpy8I	GTNNAC	2 cut(s)	628, 788
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	4 cut(s)	84, 119, 514, 518
HpyCH4IV	ACGT	2 cut(s)	379, 513
HpyCH4V	TGCA	4 cut(s)	412, 480, 520, 778
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	2 cut(s)	379, 513
Hsp92II	CATG	2 cut(s)	580, 737
KpnI	GGTACC	1 cut(s)	560
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	141, 445, 653, 793
LguI	GCTCTTC	1 cut(s)	722
LpnPI	CCDG	3 cut(s)	401, 539, 566
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	3 cut(s)	461, 638, 651
MaeII	ACGT	2 cut(s)	379, 513
MaeIII	GTNAC	3 cut(s)	380, 431, 543
MalI	GATC	4 cut(s)	143, 447, 655, 795
MboI	GATC	4 cut(s)	141, 445, 653, 793
MboII	GAAGA	7 cut(s)	16, 60, 141, 416, 455, 521, 709
MflI	RGATCY	1 cut(s)	653
MluCI	AATT	1 cut(s)	100
MlyI	GAGTC	2 cut(s)	459, 590
MmeI	TCCRAC	2 cut(s)	112, 493
MnlI	CCTC	8 cut(s)	95, 104, 107, 132, 137, 489, 534, 758
MseI	TTAA	2 cut(s)	266, 627
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	319, 667
MspI	CCGG	2 cut(s)	388, 807
MspR9I	CCNGG	2 cut(s)	554, 807
MvaI	CCWGG	1 cut(s)	554
NciI	CCSGG	1 cut(s)	807
NdeII	GATC	4 cut(s)	141, 445, 653, 793
NlaIII	CATG	2 cut(s)	580, 737
NlaIV	GGNNCC	3 cut(s)	558, 648, 746
NmuCI	GTSAC	2 cut(s)	380, 431
PciSI	GCTCTTC	1 cut(s)	722
PfeI	GAWTC	8 cut(s)	166, 178, 226, 238, 286, 298, 346, 708
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	2 cut(s)	459, 590
PpsI	GAGTC	2 cut(s)	459, 590
Ppu21I	YACGTR	1 cut(s)	514
PshBI	ATTAAT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	3 cut(s)	558, 648, 746
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	653
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	2 cut(s)	516, 558
RsaNI	GTAC	2 cut(s)	515, 557
RseI	CAYNNNNRTG	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	2 cut(s)	266, 627
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	4 cut(s)	141, 445, 653, 793
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	459, 590
ScrFI	CCNGG	2 cut(s)	554, 807
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	3 cut(s)	197, 257, 317
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	3 cut(s)	461, 638, 651
StyD4I	CCNGG	2 cut(s)	552, 805
TaiI	ACGT	2 cut(s)	382, 516
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	1 cut(s)	100
TfiI	GAWTC	8 cut(s)	166, 178, 226, 238, 286, 298, 346, 708
Tru1I	TTAA	2 cut(s)	266, 627
Tru9I	TTAA	2 cut(s)	266, 627
TseFI	GTSAC	2 cut(s)	380, 431
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	2 cut(s)	380, 431
TspDTI	ATGAA	2 cut(s)	416, 478
TspGWI	ACGGA	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	266
XspI	CTAG	3 cut(s)	461, 638, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.