gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48720 |
| fragaria_vesca | FvH4_2g28692 FvH4_5g18842 FvH4_6g09151 |
| malus_domestica | MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1 |
| prunus_persica | Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1 |
| pyrus_communis | pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240 |
| rosa_chinensis | RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371 |
| rosa_roxburghii | Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260 |
| rosa_samantha | Rh3BG173000 |
| rosa_wichuraiana | Rw4G008490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 154 |
| AciI | CCGC | 1 cut(s) | 83 |
| AclI | AACGTT | 1 cut(s) | 167 |
| AclWI | GGATC | 1 cut(s) | 93 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 51 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 154 |
| AgsI | TTSAA | 1 cut(s) | 165 |
| AjnI | CCWGG | 1 cut(s) | 147 |
| AluBI | AGCT | 1 cut(s) | 19 |
| AluI | AGCT | 1 cut(s) | 19 |
| AlwI | GGATC | 1 cut(s) | 93 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BceAI | ACGGC | 1 cut(s) | 56 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 161, 195 |
| BciT130I | CCWGG | 1 cut(s) | 149 |
| Bme1390I | CCNGG | 1 cut(s) | 149 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmrFI | CCNGG | 1 cut(s) | 149 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 1 cut(s) | 148 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 154 |
| BseBI | CCWGG | 1 cut(s) | 149 |
| BseDI | CCNNGG | 1 cut(s) | 148 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 154 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 154 |
| Bsp143I | GATC | 1 cut(s) | 85 |
| BspACI | CCGC | 1 cut(s) | 83 |
| BspPI | GGATC | 1 cut(s) | 93 |
| BssECI | CCNNGG | 1 cut(s) | 148 |
| BssMI | GATC | 1 cut(s) | 85 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 1 cut(s) | 149 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 200 |
| BstKTI | GATC | 1 cut(s) | 88 |
| BstMBI | GATC | 1 cut(s) | 85 |
| BstNI | CCWGG | 1 cut(s) | 149 |
| BstSCI | CCNGG | 1 cut(s) | 147 |
| BtsI | GCAGTG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| Cac8I | GCNNGC | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| Csp6I | GTAC | 1 cut(s) | 50 |
| CviJI | RGCY | 2 cut(s) | 19, 71 |
| CviKI_1 | RGCY | 2 cut(s) | 19, 71 |
| CviQI | GTAC | 1 cut(s) | 50 |
| DpnI | GATC | 1 cut(s) | 87 |
| DpnII | GATC | 1 cut(s) | 85 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| EcoRII | CCWGG | 1 cut(s) | 147 |
| FaiI | YATR | 6 cut(s) | 22, 45, 76, 78, 145, 208 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| HinfI | GANTC | 1 cut(s) | 161 |
| Hpy188III | TCNNGA | 1 cut(s) | 172 |
| HpyAV | CCTTC | 2 cut(s) | 112, 169 |
| HpyCH4IV | ACGT | 1 cut(s) | 167 |
| HpyCH4V | TGCA | 1 cut(s) | 182 |
| HpySE526I | ACGT | 1 cut(s) | 167 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Kzo9I | GATC | 1 cut(s) | 85 |
| LpnPI | CCDG | 2 cut(s) | 134, 161 |
| MaeII | ACGT | 1 cut(s) | 167 |
| MalI | GATC | 1 cut(s) | 87 |
| MboI | GATC | 1 cut(s) | 85 |
| MboII | GAAGA | 2 cut(s) | 131, 170 |
| MluCI | AATT | 1 cut(s) | 10 |
| MspR9I | CCNGG | 1 cut(s) | 149 |
| MvaI | CCWGG | 1 cut(s) | 149 |
| NdeII | GATC | 1 cut(s) | 85 |
| NmeAIII | GCCGAG | 1 cut(s) | 85 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 154 |
| Psp1406I | AACGTT | 1 cut(s) | 167 |
| Psp6I | CCWGG | 1 cut(s) | 147 |
| PspGI | CCWGG | 1 cut(s) | 147 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| RsaI | GTAC | 1 cut(s) | 51 |
| RsaNI | GTAC | 1 cut(s) | 50 |
| Sau3AI | GATC | 1 cut(s) | 85 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 1 cut(s) | 149 |
| SetI | ASST | 3 cut(s) | 21, 170, 180 |
| SgeI | CNNG | 6 cut(s) | 73, 77, 115, 160, 161, 184 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 101 |
| SmoI | CTYRAG | 1 cut(s) | 101 |
| Sse9I | AATT | 1 cut(s) | 10 |
| SsiI | CCGC | 1 cut(s) | 83 |
| StyD4I | CCNGG | 1 cut(s) | 147 |
| TaiI | ACGT | 1 cut(s) | 170 |
| TaqI | TCGA | 1 cut(s) | 171 |
| TasI | AATT | 1 cut(s) | 10 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| TscAI | CASTG | 1 cut(s) | 61 |
| TspRI | CASTG | 1 cut(s) | 61 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 154 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |