transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48720 |
| fragaria_vesca | FvH4_2g28692 FvH4_5g18842 FvH4_6g09151 |
| malus_domestica | MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1 |
| prunus_persica | Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1 |
| pyrus_communis | pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240 |
| rosa_chinensis | RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371 |
| rosa_roxburghii | Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260 |
| rosa_samantha | Rh3BG173000 |
| rosa_wichuraiana | Rw4G008490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 191 |
| AcsI | RAATTY | 1 cut(s) | 151 |
| ApeKI | GCWGC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 1 cut(s) | 152 |
| BbsI | GAAGAC | 1 cut(s) | 86 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BisI | GCNGC | 1 cut(s) | 94 |
| BlsI | GCNGC | 1 cut(s) | 95 |
| BmiI | GGNNCC | 1 cut(s) | 206 |
| BmsI | GCATC | 1 cut(s) | 91 |
| BpiI | GAAGAC | 1 cut(s) | 86 |
| BpmI | CTGGAG | 1 cut(s) | 223 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| Bse1I | ACTGG | 1 cut(s) | 318 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseGI | GGATG | 1 cut(s) | 243 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseNI | ACTGG | 1 cut(s) | 318 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BspLI | GGNNCC | 1 cut(s) | 206 |
| BsrI | ACTGG | 1 cut(s) | 318 |
| Bst4CI | ACNGT | 1 cut(s) | 11 |
| BstF5I | GGATG | 1 cut(s) | 243 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 1 cut(s) | 86 |
| BtsCI | GGATG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 1 cut(s) | 311 |
| CviJI | RGCY | 2 cut(s) | 93, 207 |
| CviKI_1 | RGCY | 2 cut(s) | 93, 207 |
| DraI | TTTAAA | 1 cut(s) | 277 |
| FaiI | YATR | 7 cut(s) | 99, 138, 191, 220, 222, 287, 293 |
| FauNDI | CATATG | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 1 cut(s) | 94 |
| FokI | GGATG | 1 cut(s) | 230 |
| Fsp4HI | GCNGC | 1 cut(s) | 94 |
| GluI | GCNGC | 1 cut(s) | 94 |
| GsuI | CTGGAG | 1 cut(s) | 223 |
| HinfI | GANTC | 1 cut(s) | 19 |
| HphI | GGTGA | 1 cut(s) | 152 |
| Hpy188III | TCNNGA | 1 cut(s) | 202 |
| HpyAV | CCTTC | 1 cut(s) | 235 |
| HpyCH4III | ACNGT | 1 cut(s) | 11 |
| LmnI | GCTCC | 1 cut(s) | 204 |
| LpnPI | CCDG | 3 cut(s) | 187, 261, 299 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| LweI | GCATC | 1 cut(s) | 91 |
| MboII | GAAGA | 5 cut(s) | 91, 156, 158, 159, 220 |
| MfeI | CAATTG | 1 cut(s) | 61 |
| MluCI | AATT | 7 cut(s) | 52, 61, 126, 151, 160, 186, 213 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MnlI | CCTC | 5 cut(s) | 45, 103, 116, 277, 307 |
| MseI | TTAA | 1 cut(s) | 276 |
| MslI | CAYNNNNRTG | 2 cut(s) | 236, 277 |
| MunI | CAATTG | 1 cut(s) | 61 |
| NdeI | CATATG | 1 cut(s) | 220 |
| NlaIV | GGNNCC | 1 cut(s) | 206 |
| PkrI | GCNGC | 1 cut(s) | 95 |
| PleI | GAGTC | 1 cut(s) | 13 |
| PpsI | GAGTC | 1 cut(s) | 13 |
| PsiI | TTATAA | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 1 cut(s) | 206 |
| RseI | CAYNNNNRTG | 2 cut(s) | 236, 277 |
| SaqAI | TTAA | 1 cut(s) | 276 |
| SatI | GCNGC | 1 cut(s) | 94 |
| SchI | GAGTC | 1 cut(s) | 13 |
| SetI | ASST | 2 cut(s) | 114, 269 |
| SfaNI | GCATC | 1 cut(s) | 91 |
| SgeI | CNNG | 6 cut(s) | 117, 184, 214, 260, 280, 315 |
| SmiI | ATTTAAAT | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 236, 277 |
| Sse9I | AATT | 7 cut(s) | 52, 61, 126, 151, 160, 186, 213 |
| SwaI | ATTTAAAT | 1 cut(s) | 277 |
| TaaI | ACNGT | 1 cut(s) | 11 |
| TaqI | TCGA | 2 cut(s) | 14, 269 |
| TasI | AATT | 7 cut(s) | 52, 61, 126, 151, 160, 186, 213 |
| Tru1I | TTAA | 1 cut(s) | 276 |
| Tru9I | TTAA | 1 cut(s) | 276 |
| TscAI | CASTG | 1 cut(s) | 318 |
| TseI | GCWGC | 1 cut(s) | 93 |
| TspDTI | ATGAA | 4 cut(s) | 92, 159, 220, 254 |
| TspRI | CASTG | 1 cut(s) | 318 |
| XapI | RAATTY | 1 cut(s) | 151 |