RchiOBHm_Chr1g0362001

strictosidine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002557
Physical Location & Seq
Forward (+)
53734093 .. 53734530
438 bp
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UTR
Exon/CDS
Intron
PRQ58685

Sequence Viewer

Length: 324 bp
ATGTATTTGATGAACAGGCATCCAACAACAGTTGTGCAAGGAATGACACCAATTGAAGTCTGGAGTGGAAGAAAACCAAATGTTAATCACTTGAGGGTGTTTGGTTCAATCTGCTATGCACATATTCCAAAGGAGCTGAGAAGGAAGCTTGATGAATCAAGTGAAAAGTCTGTGTTCATGGGATACAGTTCACATACAAAGAGTTATAGGCTCTATAATTTGAAAAAGAAGAAAATGATTATCTGCAAGATGTTCTCTTCAGTGAGAAATCATCTTGGGGGATTGGAATCAAGGTTCAGTCTTGCAACAAGATGTGCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

107

Amino Acids

12.47

Weight (kDa)

10.29

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 36 - 82 6.8e-18 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 56, 108, 223
AloI GAACNNNNNNTCC 2 cut(s) 278, 310
AluBI AGCT 2 cut(s) 136, 148
AluI AGCT 2 cut(s) 136, 148
BciVI GTATCC 1 cut(s) 176
BfuI GTATCC 1 cut(s) 176
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 286
BseGI GGATG 1 cut(s) 19
BseJI GATNNNNATC 1 cut(s) 286
BseMII CTCAG 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 31, 188
Bst6I CTCTTC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 19
BsuI GTATCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 267
CviAII CATG 1 cut(s) 178
CviJI RGCY 3 cut(s) 136, 148, 211
CviKI_1 RGCY 3 cut(s) 136, 148, 211
DdeI CTNAG 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 1 cut(s) 181
FaiI YATR 6 cut(s) 117, 123, 179, 195, 207, 216
FatI CATG 1 cut(s) 177
FokI GGATG 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 82
Hin1II CATG 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 155, 287
Hpy166II GTNNAC 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 2 cut(s) 31, 188
HpyCH4V TGCA 5 cut(s) 37, 119, 246, 305, 317
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 1 cut(s) 181
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 1 cut(s) 46
LweI GCATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 81, 241, 249
MfeI CAATTG 1 cut(s) 51
MluCI AATT 2 cut(s) 51, 217
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 1 cut(s) 87
MseI TTAA 1 cut(s) 84
MunI CAATTG 1 cut(s) 51
NlaIII CATG 1 cut(s) 181
PfeI GAWTC 2 cut(s) 155, 287
SaqAI TTAA 1 cut(s) 84
SetI ASST 3 cut(s) 138, 150, 296
SfaNI GCATC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 2 cut(s) 51, 217
TaaI ACNGT 2 cut(s) 31, 188
TasI AATT 2 cut(s) 51, 217
TfiI GAWTC 2 cut(s) 155, 287
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 267
TspDTI ATGAA 3 cut(s) 26, 166, 168
TspRI CASTG 1 cut(s) 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.