Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002557

Physical Location & Seq

Genomic Coordinates Forward (+)

26262061 .. 26263155

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1224100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGGATGAACAAGTTCATTTCAATTTTGCTTTCCTCATATTTTTGCTTTCATGTCCTAATTTGTCACTCATGCCTTGCCTTGAGACTGAGTGGAAATGAGACAGATCGATTGACGTTGCTTGAAATCAAGGCGAGGATAACCAATGACCCTGTTGAAGACTTGACTTCATGGAATGAAACCAATACCAGAATAATTTCAAAGTTAAGAATAATTTCAGTACTCTCCAACAAACTCACAGGAAGTATCCCCAACTCTTTTGCCAATTTATCATCTTTTGAGTTGCTTTCAGCAACCGGTAATGATTTTTATGGGAGTATTCCAGATATCTTTGGCCAACTGGCCAATTTTAAAGAACTAGGTTTGGGTAATAATAGGTTGTCGGGTGTGATCCCTCCCTCACTCTATGATCTCTCTTCCATTAGTGTCATTGATGTTCAAGGAAGTAAAATCCAAGGCACTTTGCTTCCAGACTTAGGTATTCTCTTTCCAAATCTCAAGTATTTTGGCATCGGCAGCAACCAATTTAGTGGAACTATACCTGTTACATTATCTAATGCCTCAAATCTAGATACCTTTTCGGTGGTAAACAACAATATTCATGGAAAAGTCCCCTCTTTGAAAAATCTATGTAAGCTAGAAACTATAAACCTTTCTTACAATAGCCTTGGAAGTGGGGGAAATGGTGACTTGAGCTTTCTATGCGATTTGACTAATGCCACCCAGTTATTGCGACTGCTAATCGATACAAACAATTTTGGGGGTATTCTACCTCAATGCATAGCAAACTTGTCTTCTTCTCTTGTATACTTGCATGCAGAATACAATAAAGTATCAGGAAGAATCCCCCATGGGATTGGAAATCTGGCTAACCTGGAGAGCGTTTGTTTTGCCAAGAACCAATTTTCAGAAAGCATCCCACCCGATGTTGGAAAGCTTCGGAGGTTATATGAATTAGATTTGGGTTTTAGCAATCTCTCTGCCTATATCCCACCCTCTTTTGGGAATTTAAGTGAACTATTTATATTAAGTTTACAAGCCAACAAACTTAAGGCAATATTCCCTCAAGTAGCCGCGGAACATAGGGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

39.58

Weight (kDa)

6.31

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48720
fragaria_vesca	FvH4_2g28692 FvH4_5g18842 FvH4_6g09151
malus_domestica	MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1
prunus_persica	Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1
pyrus_communis	pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240
rosa_chinensis	RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371
rosa_roxburghii	Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260
rosa_samantha	Rh3BG173000
rosa_wichuraiana	Rw4G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	1 cut(s)	1076
AciI	CCGC	2 cut(s)	1074, 1076
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	2 cut(s)	334, 342
AcsI	RAATTY	1 cut(s)	1006
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	4 cut(s)	476, 929, 1001, 1002
AflII	CTTAAG	1 cut(s)	1049
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	6 cut(s)	24, 125, 158, 201, 440, 622
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	3 cut(s)	637, 696, 937
AluI	AGCT	3 cut(s)	637, 696, 937
Alw26I	GTCTC	2 cut(s)	79, 95
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	334, 342
ApeKI	GCWGC	1 cut(s)	516
ApoI	RAATTY	1 cut(s)	1006
AsiGI	ACCGGT	1 cut(s)	296
Asp700I	GAANNNNTTC	3 cut(s)	14, 196, 214
AsuHPI	GGTGA	1 cut(s)	698
BalI	TGGCCA	2 cut(s)	336, 344
BbsI	GAAGAC	2 cut(s)	165, 786
BbvI	GCAGC	1 cut(s)	528
BciT130I	CCWGG	1 cut(s)	875
BciVI	GTATCC	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	79, 95
BfaI	CTAG	3 cut(s)	359, 569, 638
BfrI	CTTAAG	1 cut(s)	1049
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	517, 1074
BlsI	GCNGC	2 cut(s)	518, 1075
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	875
BmrFI	CCNGG	1 cut(s)	875
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	2 cut(s)	519, 924
BmuI	ACTGGG	1 cut(s)	718
BpiI	GAAGAC	2 cut(s)	165, 786
BpmI	CTGGAG	1 cut(s)	896
BpuEI	CTTGAG	4 cut(s)	103, 482, 712, 1050
Bsa29I	ATCGAT	2 cut(s)	109, 744
BsaJI	CCNNGG	4 cut(s)	454, 667, 850, 1074
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	4 cut(s)	476, 929, 1001, 1002
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	345, 724
BseBI	CCWGG	1 cut(s)	875
BseCI	ATCGAT	2 cut(s)	109, 744
BseDI	CCNNGG	4 cut(s)	454, 667, 850, 1074
BseGI	GGATG	3 cut(s)	12, 915, 1093
BseLI	CCNNNNNNNGG	4 cut(s)	476, 929, 1001, 1002
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	345, 724
BseXI	GCAGC	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	1076
BshFI	GGCC	2 cut(s)	336, 344
BshTI	ACCGGT	1 cut(s)	296
BshVI	ATCGAT	2 cut(s)	109, 744
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	4 cut(s)	476, 929, 1001, 1002
BsmAI	GTCTC	2 cut(s)	79, 95
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	336, 344
Bsp143I	GATC	3 cut(s)	106, 390, 409
Bsp19I	CCATGG	1 cut(s)	850
BspACI	CCGC	2 cut(s)	1074, 1076
BspANI	GGCC	2 cut(s)	336, 344
BspCNI	CTCAG	1 cut(s)	81
BspDI	ATCGAT	2 cut(s)	109, 744
BspFNI	CGCG	1 cut(s)	1076
BspPI	GGATC	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	1049
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	345, 724
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	4 cut(s)	454, 667, 850, 1074
BssMI	GATC	3 cut(s)	106, 390, 409
BssNAI	GTATAC	1 cut(s)	808
BssT1I	CCWWGG	3 cut(s)	454, 667, 850
Bst1107I	GTATAC	1 cut(s)	808
Bst2UI	CCWGG	1 cut(s)	875
Bst6I	CTCTTC	1 cut(s)	421
BstAFI	CTTAAG	1 cut(s)	1049
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	2 cut(s)	89, 475
BstDSI	CCRYGG	2 cut(s)	850, 1074
BstF5I	GGATG	3 cut(s)	12, 915, 1093
BstFNI	CGCG	1 cut(s)	1076
BstKTI	GATC	3 cut(s)	109, 393, 412
BstMAI	GTCTC	2 cut(s)	79, 95
BstMBI	GATC	3 cut(s)	106, 390, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	516, 702
BstNI	CCWGG	1 cut(s)	875
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	1 cut(s)	873
BstUI	CGCG	1 cut(s)	1076
BstV1I	GCAGC	1 cut(s)	528
BstV2I	GAAGAC	2 cut(s)	165, 786
BstXI	CCANNNNNNTGG	2 cut(s)	530, 857
BstZ17I	GTATAC	1 cut(s)	808
Bsu15I	ATCGAT	2 cut(s)	109, 744
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	336, 344
BsuTUI	ATCGAT	2 cut(s)	109, 744
BtgI	CCRYGG	2 cut(s)	850, 1074
BtsCI	GGATG	3 cut(s)	12, 915, 1093
Cac8I	GCNNGC	1 cut(s)	816
Cfr10I	RCCGGY	1 cut(s)	296
Cfr42I	CCGCGG	1 cut(s)	1077
ClaI	ATCGAT	2 cut(s)	109, 744
Csp6I	GTAC	1 cut(s)	221
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	6 cut(s)	53, 72, 171, 602, 815, 851
CviJI	RGCY	9 cut(s)	336, 344, 637, 666, 696, 869, 937, 1040, 1073
CviKI_1	RGCY	9 cut(s)	336, 344, 637, 666, 696, 869, 937, 1040, 1073
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	89, 475
DpnI	GATC	3 cut(s)	108, 392, 411
DpnII	GATC	3 cut(s)	106, 390, 409
DraI	TTTAAA	1 cut(s)	352
EaeI	YGGCCR	2 cut(s)	334, 342
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	3 cut(s)	454, 667, 850
Eco32I	GATATC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	873
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	3 cut(s)	454, 667, 850
EcoT22I	ATGCAT	1 cut(s)	782
ErhI	CCWWGG	3 cut(s)	454, 667, 850
FaeI	CATG	6 cut(s)	56, 75, 174, 605, 818, 854
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	6 cut(s)	52, 71, 170, 601, 814, 850
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	2 cut(s)	517, 1074
FokI	GGATG	2 cut(s)	19, 902
Fsp4HI	GCNGC	2 cut(s)	517, 1074
FspBI	CTAG	3 cut(s)	359, 569, 638
GluI	GCNGC	2 cut(s)	517, 1074
GsuI	CTGGAG	1 cut(s)	896
HaeIII	GGCC	2 cut(s)	336, 344
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	6 cut(s)	56, 75, 174, 605, 818, 854
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	1 cut(s)	843
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	4 cut(s)	589, 808, 1016, 1034
Hpy188I	TCNGA	2 cut(s)	910, 942
Hpy188III	TCNNGA	4 cut(s)	323, 470, 569, 837
Hpy8I	GTNNAC	4 cut(s)	589, 808, 1016, 1034
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	780, 814, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	516, 702
HpyF3I	CTNAG	2 cut(s)	89, 475
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	6 cut(s)	56, 75, 174, 605, 818, 854
KspI	CCGCGG	1 cut(s)	1077
Kzo9I	GATC	3 cut(s)	106, 390, 409
Lsp1109I	GCAGC	1 cut(s)	528
LweI	GCATC	2 cut(s)	519, 924
MaeI	CTAG	3 cut(s)	359, 569, 638
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	65, 544, 686
MalI	GATC	3 cut(s)	108, 392, 411
MboI	GATC	3 cut(s)	106, 390, 409
MboII	GAAGA	5 cut(s)	170, 408, 786, 789, 852
MlsI	TGGCCA	2 cut(s)	336, 344
MluNI	TGGCCA	2 cut(s)	336, 344
MmeI	TCCRAC	2 cut(s)	252, 910
Mox20I	TGGCCA	2 cut(s)	336, 344
Mph1103I	ATGCAT	1 cut(s)	782
MroXI	GAANNNNTTC	3 cut(s)	14, 196, 214
MscI	TGGCCA	2 cut(s)	336, 344
MseI	TTAA	6 cut(s)	206, 351, 1010, 1028, 1050, 1093
MslI	CAYNNNNRTG	1 cut(s)	1086
Msp20I	TGGCCA	2 cut(s)	336, 344
MspA1I	CMGCKG	1 cut(s)	1076
MspCI	CTTAAG	1 cut(s)	1049
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	875
MvaI	CCWGG	1 cut(s)	875
MvnI	CGCG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	2 cut(s)	516, 702
NcoI	CCATGG	1 cut(s)	850
NdeII	GATC	3 cut(s)	106, 390, 409
NlaIII	CATG	6 cut(s)	56, 75, 174, 605, 818, 854
NmuCI	GTSAC	2 cut(s)	65, 686
NsiI	ATGCAT	1 cut(s)	782
NspI	RCATGY	1 cut(s)	818
PaeI	GCATGC	1 cut(s)	818
PdmI	GAANNNNTTC	3 cut(s)	14, 196, 214
PfeI	GAWTC	1 cut(s)	843
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	518, 1075
Psp6I	CCWGG	1 cut(s)	873
PspGI	CCWGG	1 cut(s)	873
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	1086
SacII	CCGCGG	1 cut(s)	1077
SaqAI	TTAA	6 cut(s)	206, 351, 1010, 1028, 1050, 1093
SatI	GCNGC	2 cut(s)	517, 1074
Sau3AI	GATC	3 cut(s)	106, 390, 409
ScaI	AGTACT	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	875
SfaNI	GCATC	2 cut(s)	519, 924
Sfr303I	CCGCGG	1 cut(s)	1077
SgrBI	CCGCGG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	1 cut(s)	1086
SmlI	CTYRAG	5 cut(s)	82, 497, 691, 1049, 1065
SmoI	CTYRAG	5 cut(s)	82, 497, 691, 1049, 1065
SphI	GCATGC	1 cut(s)	818
SsiI	CCGC	2 cut(s)	1074, 1076
SspI	AATATT	2 cut(s)	598, 1059
SspMI	CTAG	3 cut(s)	359, 569, 638
StyD4I	CCNGG	1 cut(s)	873
StyI	CCWWGG	3 cut(s)	454, 667, 850
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	109, 744
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	1076
TfiI	GAWTC	1 cut(s)	843
Tru1I	TTAA	6 cut(s)	206, 351, 1010, 1028, 1050, 1093
Tru9I	TTAA	6 cut(s)	206, 351, 1010, 1028, 1050, 1093
TseFI	GTSAC	2 cut(s)	65, 686
TseI	GCWGC	1 cut(s)	516
Tsp45I	GTSAC	2 cut(s)	65, 686
TspDTI	ATGAA	7 cut(s)	7, 23, 41, 159, 192, 590, 966
Vha464I	CTTAAG	1 cut(s)	1049
XapI	RAATTY	1 cut(s)	1006
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	807
XmnI	GAANNNNTTC	3 cut(s)	14, 196, 214
XspI	CTAG	3 cut(s)	359, 569, 638
ZrmI	AGTACT	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.