RchiOBHm_Chr2g0152171
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002557
Physical Location & Seq
Reverse (-)
69624367 .. 69624899
533 bp
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UTR
Exon/CDS
Intron
PRQ52134

Sequence Viewer

Length: 282 bp
ATGCATTACCGCCTGTTTTGCTACCTAGTGGAGAAAAAGTGCATATTGAAGCCACAGGATCTGGCTACGAAGAGGACGATTGGTTTGGGTAAAGAACGTGATGGGCTATACTATTTGGTGGCACTAGCGGCGGAACAAACCAAACCTTCCATTACCAGACCTTCCAGATCATCTTGCAACCTTGCCATTTCATCGACCAATCTTTGGCATAATCGCTTGGGTCATGTTTCTTCTCCATGTTTAAGTCACATAGCAAAGCATTTTCTGCATTTTTCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

9.7

Isoelectric Point (pI)

65.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag_pre-integrs PF13976 50 - 89 4.7e-09 GAG-pre-integrase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 204
AciI CCGC 3 cut(s) 10, 128, 131
AclWI GGATC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 1 cut(s) 49
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 61
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
BccI CCATC 1 cut(s) 95
BfaI CTAG 2 cut(s) 26, 125
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 204
Bsp143I GATC 2 cut(s) 58, 167
BspACI CCGC 3 cut(s) 10, 128, 131
BspPI GGATC 1 cut(s) 66
BssMI GATC 2 cut(s) 58, 167
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 265
BstKTI GATC 2 cut(s) 61, 170
BstMBI GATC 2 cut(s) 58, 167
BstMWI GCNNNNNNNGC 3 cut(s) 18, 128, 265
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 61
CviAII CATG 2 cut(s) 224, 237
CviJI RGCY 3 cut(s) 52, 65, 106
CviKI_1 RGCY 3 cut(s) 52, 65, 106
DpnI GATC 2 cut(s) 60, 169
DpnII GATC 2 cut(s) 58, 167
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 227, 240
FaiI YATR 6 cut(s) 44, 109, 210, 225, 238, 251
FatI CATG 2 cut(s) 223, 236
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 26, 125
GluI GCNGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 227, 240
Hpy188III TCNNGA 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 156, 171
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 4, 42, 177, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 128, 265
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 2 cut(s) 227, 240
Kzo9I GATC 2 cut(s) 58, 167
LpnPI CCDG 5 cut(s) 26, 41, 47, 169, 178
MaeI CTAG 2 cut(s) 26, 125
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 60, 169
MboI GATC 2 cut(s) 58, 167
MboII GAAGA 2 cut(s) 82, 222
MflI RGATCY 1 cut(s) 58
MnlI CCTC 1 cut(s) 66
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 18, 128, 265
NdeII GATC 2 cut(s) 58, 167
NlaIII CATG 2 cut(s) 227, 240
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 204
PkrI GCNGC 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 58
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 58, 167
SetI ASST 5 cut(s) 27, 100, 148, 163, 183
SsiI CCGC 3 cut(s) 10, 128, 131
SspMI CTAG 2 cut(s) 26, 125
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 194
TauI GCSGC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 204
XspI CTAG 2 cut(s) 26, 125
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.