transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G48720 |
| fragaria_vesca | FvH4_2g28692 FvH4_5g18842 FvH4_6g09151 |
| malus_domestica | MD02G1224100.v1.1 MD05G1187300.v1.1 MD05G1333300.v1.1 MD11G1249500.v1.1 MD16G1029500.v1.1 |
| prunus_persica | Prupe.5G008900_v2.0.a1 Prupe.6G200700_v2.0.a1 Prupe.7G019700_v2.0.a1 |
| pyrus_communis | pycom01g03530 pycom02g12970 pycom02g19220 pycom05g10750 pycom09g02370 pycom10g16330 pycom14g07330 pycom15g16240 |
| rosa_chinensis | RchiOBHm_Chr1g0340271 RchiOBHm_Chr1g0362001 RchiOBHm_Chr1g0382731 RchiOBHm_Chr2g0152171 RchiOBHm_Chr3g0480511 RchiOBHm_Chr4g0398841 RchiOBHm_Chr5g0081101 RchiOBHm_Chr7g0182361 RchiOBHm_Chr7g0237371 |
| rosa_roxburghii | Rroxscaffold_160G00433850 Rroxscaffold_1G00001000 Rroxscaffold_1G00046300 Rroxscaffold_3G00252380 Rroxscaffold_3G00254550 Rroxscaffold_4G00320010 Rroxscaffold_4G00327310 Rroxscaffold_5G00336230 Rroxscaffold_7G00179260 |
| rosa_samantha | Rh3BG173000 |
| rosa_wichuraiana | Rw4G008490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 168 |
| AgsI | TTSAA | 5 cut(s) | 170, 182, 203, 351, 377 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 313 |
| ApeKI | GCWGC | 2 cut(s) | 272, 329 |
| BbvI | GCAGC | 2 cut(s) | 259, 316 |
| BccI | CCATC | 1 cut(s) | 250 |
| BciVI | GTATCC | 2 cut(s) | 228, 291 |
| BfaI | CTAG | 1 cut(s) | 92 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| BfuI | GTATCC | 2 cut(s) | 228, 291 |
| BisI | GCNGC | 2 cut(s) | 273, 330 |
| BlsI | GCNGC | 2 cut(s) | 274, 331 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 313 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 43, 73 |
| BseXI | GCAGC | 2 cut(s) | 259, 316 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| Bst4CI | ACNGT | 1 cut(s) | 67 |
| Bst6I | CTCTTC | 2 cut(s) | 168, 180 |
| BstC8I | GCNNGC | 2 cut(s) | 144, 327 |
| BstNSI | RCATGY | 1 cut(s) | 329 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 2 cut(s) | 259, 316 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 249 |
| BsuI | GTATCC | 2 cut(s) | 228, 291 |
| Cac8I | GCNNGC | 2 cut(s) | 144, 327 |
| CviAII | CATG | 2 cut(s) | 128, 326 |
| DriI | GACNNNNNGTC | 1 cut(s) | 313 |
| Eam1104I | CTCTTC | 2 cut(s) | 168, 180 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 313 |
| EarI | CTCTTC | 2 cut(s) | 168, 180 |
| Eco57I | CTGAAG | 1 cut(s) | 168 |
| FaeI | CATG | 2 cut(s) | 131, 329 |
| FaiI | YATR | 3 cut(s) | 71, 129, 327 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 372 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FatI | CATG | 2 cut(s) | 127, 325 |
| Fnu4HI | GCNGC | 2 cut(s) | 273, 330 |
| Fsp4HI | GCNGC | 2 cut(s) | 273, 330 |
| FspBI | CTAG | 1 cut(s) | 92 |
| GluI | GCNGC | 2 cut(s) | 273, 330 |
| Hin1II | CATG | 2 cut(s) | 131, 329 |
| HinfI | GANTC | 2 cut(s) | 77, 95 |
| Hpy166II | GTNNAC | 1 cut(s) | 362 |
| Hpy188III | TCNNGA | 1 cut(s) | 377 |
| Hpy8I | GTNNAC | 1 cut(s) | 362 |
| HpyAV | CCTTC | 1 cut(s) | 33 |
| HpyCH4III | ACNGT | 1 cut(s) | 67 |
| HpyCH4V | TGCA | 1 cut(s) | 275 |
| Hsp92II | CATG | 2 cut(s) | 131, 329 |
| LpnPI | CCDG | 2 cut(s) | 87, 156 |
| Lsp1109I | GCAGC | 2 cut(s) | 259, 316 |
| MaeI | CTAG | 1 cut(s) | 92 |
| MboII | GAAGA | 5 cut(s) | 173, 182, 185, 194, 197 |
| MluCI | AATT | 2 cut(s) | 228, 256 |
| MnlI | CCTC | 5 cut(s) | 181, 190, 207, 216, 249 |
| MseI | TTAA | 2 cut(s) | 341, 391 |
| MslI | CAYNNNNRTG | 1 cut(s) | 247 |
| NlaIII | CATG | 2 cut(s) | 131, 329 |
| NspI | RCATGY | 1 cut(s) | 329 |
| PaeI | GCATGC | 1 cut(s) | 329 |
| PfeI | GAWTC | 2 cut(s) | 77, 95 |
| PkrI | GCNGC | 2 cut(s) | 274, 331 |
| RseI | CAYNNNNRTG | 1 cut(s) | 247 |
| SaqAI | TTAA | 2 cut(s) | 341, 391 |
| SatI | GCNGC | 2 cut(s) | 273, 330 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 247 |
| SphI | GCATGC | 1 cut(s) | 329 |
| Sse9I | AATT | 2 cut(s) | 228, 256 |
| SspMI | CTAG | 1 cut(s) | 92 |
| TaaI | ACNGT | 1 cut(s) | 67 |
| TaqI | TCGA | 1 cut(s) | 226 |
| TasI | AATT | 2 cut(s) | 228, 256 |
| TfiI | GAWTC | 2 cut(s) | 77, 95 |
| Tru1I | TTAA | 2 cut(s) | 341, 391 |
| Tru9I | TTAA | 2 cut(s) | 341, 391 |
| TseI | GCWGC | 2 cut(s) | 272, 329 |
| TspDTI | ATGAA | 3 cut(s) | 15, 17, 144 |
| XceI | RCATGY | 1 cut(s) | 329 |
| XspI | CTAG | 1 cut(s) | 92 |