AT1G65660

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
24418071 .. 24421361
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65660.1

Sequence Viewer

Length: 1608 bp
ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGACCATAGGAAGCAAATTGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAGGTTGATGAGGATGGAAAGGAAATTAATCCTCATATTCCGCAGTATATGTCATCTGCTCCATGGTATCTTAATTCTGAAAAACCGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCCCAATTACACTAAGTCGTGGTATGATAGAGGTGCAAAGATCTTTCAAGCTGAAAAATACCGCAAGGGAGCGTGTCAAAACTGTGGTGCAATGACGCATACTGCTAAAGCTTGTATGGATAGGCCTCGTAAGATTGGGGCGAAGTACACAAACATGAACATTGCACCTGATGAGAAAATTGAAAGTTTTGAACTTGACTACGATGGCAAGAGGGACAGATGGAATGGTTATGATCCTTCGACCTACCATCGTGTGATAGATCTTTATGAAGCAAAAGAGGATGCACGAAAGAAGTACTTGAAGGAGCAGCAACTTAAGAAACTTGAGGAGAAAAACAATAATGAAAAAGGTGATGATGCAAATAGTGATGGGGAAGAAGACGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGAGCAGGCAGATGGATTTTGCAAAGGTTGAAAAGCGTGTTAGAACAACTGGTGGTGGTAGCACAGGAACGGTTAGGAATCTGCGTATCAGAGAAGACACTGCAAAATACCTGTTGAACCTCGATGTCAACTCAGCTCATTATGACCCTAAAACTCGTTCTATGCGTGAAGACCCACTTCCAGATGCAGATCCAAATGACAAGTTTTATCTGGGAGATAATCAATATAGAAATAGTGGCCAAGCTTTGGAGTTCAAACAGCTAAACATCCATTCATGGGAAGCATTTGACAAGGGACAGGACATGCATATGCAAGCGGCTCCTTCCCAAGCTGAATTGCTCTATAAGAGCTTTCAGGTTGCAAAGGAGAAACTGAAATCTCAGACAAAGGACACAATCATGGACAAGTACGGGAATGCAGCTACAGAAGATGAAATTCCAATGGAGCTTTTACTTGGGCAAAGCGAAAGGCAAGTTGAGTATGACCGAGCAGGGAGGATTATAAAAGGACAGGAGGTGATATTGCCAAAGAGTAAATATGAAGAAGATGTTCATGCTAACAATCACACTAGTGTGTGGGGATCATATTGGAAAGATCATCAATGGGGATATAAATGTTGCCAGCAGATCATTCGCAATAGTTACTGCACAGGTTCTGCTGGAATTGAAGCTGCAGAGGCTGCCCTTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCAACTGAAGAGAGCCCAAAGAAGGTTGAAGAGAAGAGAATGGCGTCATGGGGAACTGATATTCCTGAAGATTTGGAGTTGAACGAGGAGGCACTTGCTAATGCTCTTAAAAAGGAGGATCTCAGTAGGAGGGAAGAGAAAGATGAGAGGAAACGCAAATACAATGTCAAATACAACAACGATGTGACTCCGGAAGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCATGAGGATCCAATGAAAGATTTCCTCTGA

Protein Analysis

535

Amino Acids

61.98

Weight (kDa)

5.73

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 136 - 405 1.2e-93 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1133
AccB7I CCANNNNNTGG 1 cut(s) 877
AccIII TCCGGA 1 cut(s) 1540
AciI CCGC 3 cut(s) 134, 274, 947
AclWI GGATC 7 cut(s) 206, 440, 815, 1219, 1476, 1580, 1593
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 1 cut(s) 1065
AcuI CTGAAG 2 cut(s) 1377, 1437
AcyI GRCGYC 1 cut(s) 1394
AfaI GTAC 3 cut(s) 359, 509, 1040
AfiI CCNNNNNNNGG 3 cut(s) 877, 907, 1372
AflII CTTAAG 2 cut(s) 527, 604
AhlI ACTAGT 1 cut(s) 1199
AleI CACNNNNGTG 2 cut(s) 1200, 1202
AloI GAACNNNNNNTCC 2 cut(s) 1396, 1428
AlwI GGATC 7 cut(s) 206, 440, 815, 1219, 1476, 1580, 1593
AlwNI CAGNNNCTG 2 cut(s) 1286, 1310
Aor13HI TCCGGA 1 cut(s) 1540
AoxI GGCC 2 cut(s) 335, 868
ApeKI GCWGC 4 cut(s) 520, 1049, 1301, 1310
ApoI RAATTY 1 cut(s) 1065
ArsI GACNNNNNNTTYG 2 cut(s) 1500, 1532
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 2 cut(s) 1179, 1598
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 575, 1159, 1568
BalI TGGCCA 1 cut(s) 870
BamHI GGATCC 1 cut(s) 1585
BanII GRGCYC 1 cut(s) 1367
BbsI GAAGAC 4 cut(s) 42, 597, 732, 807
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 4 cut(s) 532, 1061, 1288, 1297
BccI CCATC 7 cut(s) 101, 410, 426, 468, 575, 637, 1543
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BcnI CCSGG 1 cut(s) 79
BcuI ACTAGT 1 cut(s) 1199
BfaI CTAG 2 cut(s) 30, 1200
BfmI CTRYAG 2 cut(s) 1053, 1302
BfrI CTTAAG 2 cut(s) 527, 604
BglII AGATCT 2 cut(s) 252, 472
BisI GCNGC 5 cut(s) 521, 948, 1050, 1302, 1311
BlsI GCNGC 5 cut(s) 522, 949, 1051, 1303, 1312
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 951, 1587
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 4 cut(s) 199, 484, 559, 805
BpiI GAAGAC 4 cut(s) 42, 597, 732, 807
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 819
BsaHI GRCGYC 1 cut(s) 1394
BsaJI CCNNGG 2 cut(s) 155, 621
BsaWI WCCGGW 1 cut(s) 1540
Bsc4I CCNNNNNNNGG 3 cut(s) 877, 907, 1372
Bse1I ACTGG 1 cut(s) 685
Bse3DI GCAATG 2 cut(s) 309, 372
Bse8I GATNNNNATC 1 cut(s) 819
BseAI TCCGGA 1 cut(s) 1540
BseDI CCNNGG 2 cut(s) 155, 621
BseGI GGATG 3 cut(s) 112, 499, 897
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 3 cut(s) 877, 907, 1372
BseMI GCAATG 2 cut(s) 309, 372
BseMII CTCAG 4 cut(s) 84, 777, 1025, 1486
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 2 cut(s) 554, 1451
BseXI GCAGC 4 cut(s) 532, 1061, 1288, 1297
BsgI GTGCAG 1 cut(s) 1261
BshFI GGCC 2 cut(s) 337, 870
BsiSI CCGG 2 cut(s) 78, 1541
BslFI GGGAC 2 cut(s) 440, 939
BslI CCNNNNNNNGG 3 cut(s) 877, 907, 1372
BsmFI GGGAC 2 cut(s) 440, 939
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 337, 870
Bsp1286I GDGCHC 1 cut(s) 1367
Bsp13I TCCGGA 1 cut(s) 1540
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 3 cut(s) 134, 274, 947
BspANI GGCC 2 cut(s) 337, 870
BspCNI CTCAG 4 cut(s) 85, 776, 1024, 1485
BspEI TCCGGA 1 cut(s) 1540
BspLI GGNNCC 2 cut(s) 951, 1587
BspMAI CTGCAG 1 cut(s) 1306
BspPI GGATC 7 cut(s) 206, 440, 815, 1219, 1476, 1580, 1593
BspTI CTTAAG 2 cut(s) 527, 604
BsrDI GCAATG 2 cut(s) 309, 372
BsrI ACTGG 1 cut(s) 685
BssECI CCNNGG 2 cut(s) 155, 621
BssNI GRCGYC 1 cut(s) 1394
BssT1I CCWWGG 2 cut(s) 155, 621
Bst4CI ACNGT 2 cut(s) 296, 703
Bst6I CTCTTC 7 cut(s) 200, 1353, 1374, 1379, 1479, 1539, 1562
BstACI GRCGYC 1 cut(s) 1394
BstAFI CTTAAG 2 cut(s) 527, 604
BstAPI GCANNNNNTGC 1 cut(s) 1310
BstC8I GCNNGC 5 cut(s) 84, 638, 945, 1253, 1342
BstDEI CTNAG 5 cut(s) 93, 225, 763, 1011, 1472
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 112, 499, 897
BstMWI GCNNNNNNNGC 6 cut(s) 17, 74, 83, 1307, 1310, 1337
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 1 cut(s) 77
BstSFI CTRYAG 2 cut(s) 1053, 1302
BstV1I GCAGC 4 cut(s) 532, 1061, 1288, 1297
BstV2I GAAGAC 4 cut(s) 42, 597, 732, 807
BstX2I RGATCY 5 cut(s) 252, 472, 820, 1468, 1585
BstYI RGATCY 5 cut(s) 252, 472, 820, 1468, 1585
BsuRI GGCC 2 cut(s) 337, 870
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 3 cut(s) 112, 499, 897
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 5 cut(s) 84, 638, 945, 1253, 1342
CaiI CAGNNNCTG 2 cut(s) 1286, 1310
CseI GACGC 2 cut(s) 316, 1383
Csp6I GTAC 3 cut(s) 358, 508, 1039
CviAII CATG 8 cut(s) 156, 367, 906, 934, 1030, 1184, 1398, 1580
CviQI GTAC 3 cut(s) 358, 508, 1039
DdeI CTNAG 5 cut(s) 93, 225, 763, 1011, 1472
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 7 cut(s) 200, 1353, 1374, 1379, 1479, 1539, 1562
EarI CTCTTC 7 cut(s) 200, 1353, 1374, 1379, 1479, 1539, 1562
Eco130I CCWWGG 2 cut(s) 155, 621
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 1367
Eco57I CTGAAG 2 cut(s) 1377, 1437
EcoT14I CCWWGG 2 cut(s) 155, 621
EcoT22I ATGCAT 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 1367
ErhI CCWWGG 2 cut(s) 155, 621
FaeI CATG 8 cut(s) 159, 370, 909, 937, 1033, 1187, 1401, 1583
FalI AAGNNNNNCTT 6 cut(s) 66, 98, 494, 526, 792, 824
FaqI GGGAC 2 cut(s) 440, 939
FatI CATG 8 cut(s) 155, 366, 905, 933, 1029, 1183, 1397, 1579
FauNDI CATATG 1 cut(s) 939
Fnu4HI GCNGC 5 cut(s) 521, 948, 1050, 1302, 1311
FokI GGATG 3 cut(s) 119, 506, 884
FriOI GRGCYC 1 cut(s) 1367
Fsp4HI GCNGC 5 cut(s) 521, 948, 1050, 1302, 1311
FspBI CTAG 2 cut(s) 30, 1200
GluI GCNGC 5 cut(s) 521, 948, 1050, 1302, 1311
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 2 cut(s) 337, 870
HapII CCGG 2 cut(s) 78, 1541
HgaI GACGC 2 cut(s) 316, 1383
Hin1I GRCGYC 1 cut(s) 1394
Hin1II CATG 8 cut(s) 159, 370, 909, 937, 1033, 1187, 1401, 1583
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HindIII AAGCTT 3 cut(s) 321, 873, 1554
HinfI GANTC 2 cut(s) 709, 1537
HpaII CCGG 2 cut(s) 78, 1541
HphI GGTGA 3 cut(s) 575, 1159, 1568
Hpy166II GTNNAC 3 cut(s) 360, 760, 1576
Hpy188I TCNGA 5 cut(s) 172, 722, 1014, 1323, 1607
Hpy188III TCNNGA 3 cut(s) 812, 1415, 1541
Hpy8I GTNNAC 3 cut(s) 360, 760, 1576
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 459, 508, 963, 1321, 1366
HpyCH4III ACNGT 2 cut(s) 296, 703
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 74, 83, 1307, 1310, 1337
HpyF3I CTNAG 5 cut(s) 93, 225, 763, 1011, 1472
Hsp92I GRCGYC 1 cut(s) 1394
Hsp92II CATG 8 cut(s) 159, 370, 909, 937, 1033, 1187, 1401, 1583
Kpn2I TCCGGA 1 cut(s) 1540
LmnI GCTCC 6 cut(s) 91, 157, 281, 517, 955, 1075
Lsp1109I GCAGC 4 cut(s) 532, 1061, 1288, 1297
LweI GCATC 4 cut(s) 199, 484, 559, 805
MaeI CTAG 2 cut(s) 30, 1200
MaeIII GTNAC 2 cut(s) 1271, 1534
MflI RGATCY 5 cut(s) 252, 472, 820, 1468, 1585
MhlI GDGCHC 1 cut(s) 1367
MlsI TGGCCA 1 cut(s) 870
MluCI AATT 9 cut(s) 51, 56, 117, 166, 217, 390, 965, 1065, 1293
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 1 cut(s) 1531
Mox20I TGGCCA 1 cut(s) 870
Mph1103I ATGCAT 1 cut(s) 939
MroI TCCGGA 1 cut(s) 1540
MroXI GAANNNNTTC 2 cut(s) 1179, 1598
MscI TGGCCA 1 cut(s) 870
MseI TTAA 6 cut(s) 24, 120, 165, 528, 605, 1458
MslI CAYNNNNRTG 5 cut(s) 365, 938, 1028, 1200, 1202
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 1 cut(s) 92
MspCI CTTAAG 2 cut(s) 527, 604
MspI CCGG 2 cut(s) 78, 1541
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 1051
MwoI GCNNNNNNNGC 6 cut(s) 17, 74, 83, 1307, 1310, 1337
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 155
NdeI CATATG 1 cut(s) 939
NlaIII CATG 8 cut(s) 159, 370, 909, 937, 1033, 1187, 1401, 1583
NlaIV GGNNCC 2 cut(s) 951, 1587
NmuCI GTSAC 1 cut(s) 1534
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 1 cut(s) 937
OliI CACNNNNGTG 2 cut(s) 1200, 1202
PceI AGGCCT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 793
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 2 cut(s) 1179, 1598
PfeI GAWTC 1 cut(s) 709
PflMI CCANNNNNTGG 1 cut(s) 877
PkrI GCNGC 5 cut(s) 522, 949, 1051, 1303, 1312
PleI GAGTC 1 cut(s) 1531
PpsI GAGTC 1 cut(s) 1531
PshBI ATTAAT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 1133
PspN4I GGNNCC 2 cut(s) 951, 1587
PstI CTGCAG 1 cut(s) 1306
PstNI CAGNNNCTG 2 cut(s) 1286, 1310
PsuI RGATCY 5 cut(s) 252, 472, 820, 1468, 1585
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 3 cut(s) 359, 509, 1040
RsaNI GTAC 3 cut(s) 358, 508, 1039
RseI CAYNNNNRTG 5 cut(s) 365, 938, 1028, 1200, 1202
SaqAI TTAA 6 cut(s) 24, 120, 165, 528, 605, 1458
SatI GCNGC 5 cut(s) 521, 948, 1050, 1302, 1311
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 1 cut(s) 1531
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 1367
SfaNI GCATC 4 cut(s) 199, 484, 559, 805
SfcI CTRYAG 2 cut(s) 1053, 1302
SmiMI CAYNNNNRTG 5 cut(s) 365, 938, 1028, 1200, 1202
SmlI CTYRAG 3 cut(s) 527, 536, 604
SmoI CTYRAG 3 cut(s) 527, 536, 604
SpeI ACTAGT 1 cut(s) 1199
Sse9I AATT 9 cut(s) 51, 56, 117, 166, 217, 390, 965, 1065, 1293
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 3 cut(s) 134, 274, 947
SspI AATATT 1 cut(s) 1336
SspMI CTAG 2 cut(s) 30, 1200
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 2 cut(s) 155, 621
TaaI ACNGT 2 cut(s) 296, 703
TaqI TCGA 2 cut(s) 452, 753
TaqII GACCGA 1 cut(s) 1131
TasI AATT 9 cut(s) 51, 56, 117, 166, 217, 390, 965, 1065, 1293
TatI WGTACW 2 cut(s) 357, 507
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 1 cut(s) 709
Tru1I TTAA 6 cut(s) 24, 120, 165, 528, 605, 1458
Tru9I TTAA 6 cut(s) 24, 120, 165, 528, 605, 1458
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 1 cut(s) 1534
TseI GCWGC 4 cut(s) 520, 1049, 1301, 1310
Tsp45I GTSAC 1 cut(s) 1534
TspRI CASTG 1 cut(s) 736
Van91I CCANNNNNTGG 1 cut(s) 877
Vha464I CTTAAG 2 cut(s) 527, 604
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 1065
XceI RCATGY 1 cut(s) 937
XmnI GAANNNNTTC 2 cut(s) 1179, 1598
XspI CTAG 2 cut(s) 30, 1200
ZrmI AGTACT 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.