Rmu_sc0003610.1_g000043

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003610.1
OG0001496
Physical Location & Seq
Reverse (-)
186975 .. 188360
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003610.1_g000043.1.cds

Sequence Viewer

Length: 1386 bp
atggagaacaataaaactgaagacgagttggttgtgattatttctggtctcatacaatttgctatggtgtcgacaaatcggcatataattgacaaatcgttagtggctccatttaaatccaggcaagagcatcgcaagaacattgaattggaagaagcgcgtaaggctgggcttgtccctgctgaagtcgataagaatggaaaggagatcaatcctcatatacccaaatatgtggctgatacaccttggtatatcaaaaccgaggagggacctagtctagagcatcaaagaaagcccgaatcaaatgtgaatggcaagaagaaatcacagtatgacagaggtgcgaagctattccaggcccttacatataggaagggtgcatgtacgaactgtggatccatgaaacatgatgccaagtcatgtaccgaaagaacgaggaaagttggagcaaaatggactggcaagtacattgctccggatgagatgatagagactcttggacttctcagctatgatgaaaagcgggaccggtggaatggatataatccatcaagctatgcccatgttattaagagatatgaattacatcaggaagctcgaaacaaatacttgaaggaagaacgaatcaagaaattagaagatgagactgatgatatcagggtagatgaagccaaggctgatgagagcaagcaaacagacttcgcaaaggtcgagaagcgtgtgcgcacaacgggtggtggaagcactggaactgtcagaaacttgcgtattcgtgaggacacagcaaaatatcttcggaatcttgatgtcaactctgcgcattatgatccgaaaagccggtccatgcgtgaaaaccctaatccagatgcagatacgaacgagcagttttacgtgggagataatgtatggagaaacactggtcaagctctggagttcaggcagatgagcgttcatgctttggaagcatttgagaggggacaagatgttcacatgcaagcagctccatcccaagctgagtttctttataaaaattataaggcgattaaggagagattgacttcacagacgaattgcaccattctagaaaagtatggcaatgcagctagtggagaagaacttcctaaggagcttctactgggacagagcgaaagagatgttgaatacgatcgagctgggaggatcatcaagggcaaggaagaagcggttccgaggagcaaatatgcagaagatgtcagtatcaacaaccacacttgtgtgtggggttcgtggtggaaaggtcaccaatggggctacaagtgttgtaagcagtttatgcgaaacagttattgcacaggtgctgctggagttgaggctgccgaggctgcaatacatctcttggagccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

461

Amino Acids

52.75

Weight (kDa)

8.39

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1026, 1035
Acc16I TGCGCA 2 cut(s) 725, 819
AccI GTMKAC 1 cut(s) 71
AccII CGCG 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 2 cut(s) 523, 1202
AclWI GGATC 4 cut(s) 390, 403, 821, 1187
AcuI CTGAAG 2 cut(s) 39, 204
AfaI GTAC 3 cut(s) 385, 424, 467
AgeI ACCGGT 1 cut(s) 528
AgsI TTSAA 3 cut(s) 146, 613, 1160
AjnI CCWGG 2 cut(s) 119, 354
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 1002, 1034
AleI CACNNNNGTG 2 cut(s) 1251, 1253
AloI GAACNNNNNNTCC 4 cut(s) 380, 412, 969, 1001
Alw26I GTCTC 3 cut(s) 53, 485, 638
AlwI GGATC 4 cut(s) 390, 403, 821, 1187
AlwNI CAGNNNCTG 1 cut(s) 1337
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 5 cut(s) 998, 1100, 1337, 1352, 1361
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AsiGI ACCGGT 1 cut(s) 528
Asp700I GAANNNNTTC 3 cut(s) 350, 1116, 1203
AspLEI GCGC 3 cut(s) 160, 726, 820
AspS9I GGNCC 4 cut(s) 269, 358, 526, 840
AsuHPI GGTGA 1 cut(s) 1271
AvaII GGWCC 3 cut(s) 269, 526, 840
AxyI CCTNAGG 1 cut(s) 1122
BamHI GGATCC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 5 cut(s) 1010, 1112, 1324, 1339, 1348
BccI CCATC 2 cut(s) 556, 1012
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 121, 356
BcoDI GTCTC 3 cut(s) 53, 485, 638
BfaI CTAG 4 cut(s) 273, 278, 1082, 1104
BisI GCNGC 5 cut(s) 999, 1101, 1338, 1353, 1362
BlsI GCNGC 5 cut(s) 1000, 1102, 1339, 1354, 1363
Bme1390I CCNGG 2 cut(s) 121, 356
Bme18I GGWCC 3 cut(s) 269, 526, 840
BmgT120I GGNCC 4 cut(s) 269, 358, 526, 840
BmiI GGNNCC 6 cut(s) 108, 270, 397, 527, 1206, 1380
BmrFI CCNGG 2 cut(s) 121, 356
BmrI ACTGGG 1 cut(s) 1145
BmsI GCATC 4 cut(s) 139, 292, 400, 856
BmuI ACTGGG 1 cut(s) 1145
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 950, 1362
BsaAI YACGTR 1 cut(s) 892
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 5 cut(s) 245, 261, 672, 1208, 1356
BsaWI WCCGGW 2 cut(s) 475, 528
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bse118I RCCGGY 2 cut(s) 528, 837
Bse1I ACTGG 4 cut(s) 463, 751, 922, 1140
Bse21I CCTNAGG 1 cut(s) 1122
Bse3DI GCAATG 2 cut(s) 468, 1102
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 2 cut(s) 121, 356
BseDI CCNNGG 5 cut(s) 245, 261, 672, 1208, 1356
BseGI GGATG 2 cut(s) 484, 1004
BseMI GCAATG 2 cut(s) 468, 1102
BseMII CTCAG 2 cut(s) 520, 1005
BseNI ACTGG 4 cut(s) 463, 751, 922, 1140
BseRI GAGGAG 2 cut(s) 278, 1225
BseXI GCAGC 5 cut(s) 1010, 1112, 1324, 1339, 1348
BseYI CCCAGC 2 cut(s) 167, 1172
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 1168
BshFI GGCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 528
BsiEI CGRYCG 1 cut(s) 1168
BsiSI CCGG 3 cut(s) 476, 529, 838
BslFI GGGAC 5 cut(s) 161, 282, 539, 990, 1152
BsmAI GTCTC 3 cut(s) 53, 485, 638
BsmFI GGGAC 5 cut(s) 161, 282, 539, 990, 1152
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 53
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 5 cut(s) 207, 395, 826, 1165, 1179
BspACI CCGC 2 cut(s) 523, 1202
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 2 cut(s) 519, 1006
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 6 cut(s) 108, 270, 397, 527, 1206, 1380
BspPI GGATC 4 cut(s) 390, 403, 821, 1187
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 468, 1102
BsrFI RCCGGY 2 cut(s) 528, 837
BsrI ACTGG 4 cut(s) 463, 751, 922, 1140
BssAI RCCGGY 2 cut(s) 528, 837
BssECI CCNNGG 5 cut(s) 245, 261, 672, 1208, 1356
BssMI GATC 5 cut(s) 207, 395, 826, 1165, 1179
BssT1I CCWWGG 2 cut(s) 245, 672
Bst2UI CCWGG 2 cut(s) 121, 356
Bst4CI ACNGT 4 cut(s) 330, 392, 754, 1322
BstAPI GCANNNNNTGC 1 cut(s) 1312
BstBAI YACGTR 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 689, 996
BstDEI CTNAG 3 cut(s) 506, 1014, 1122
BstEII GGTNACC 1 cut(s) 1277
BstF5I GGATG 2 cut(s) 484, 1004
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 3 cut(s) 160, 726, 820
BstKTI GATC 5 cut(s) 210, 398, 829, 1168, 1182
BstMAI GTCTC 3 cut(s) 53, 485, 638
BstMBI GATC 5 cut(s) 207, 395, 826, 1165, 1179
BstMCI CGRYCG 1 cut(s) 1168
BstMWI GCNNNNNNNGC 5 cut(s) 164, 962, 1312, 1358, 1361
BstNI CCWGG 2 cut(s) 121, 356
BstNSI RCATGY 2 cut(s) 384, 994
BstPI GGTNACC 1 cut(s) 1277
BstSCI CCNGG 2 cut(s) 119, 354
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 5 cut(s) 1010, 1112, 1324, 1339, 1348
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 1122
BsuRI GGCC 1 cut(s) 359
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 2 cut(s) 484, 1004
BtsIMutI CAGTG 2 cut(s) 744, 915
Cac8I GCNNGC 2 cut(s) 689, 996
CaiI CAGNNNCTG 1 cut(s) 1337
CfoI GCGC 3 cut(s) 160, 726, 820
Cfr10I RCCGGY 2 cut(s) 528, 837
Cfr13I GGNCC 4 cut(s) 269, 358, 526, 840
Csp6I GTAC 3 cut(s) 384, 423, 466
CspAI ACCGGT 1 cut(s) 528
CviAII CATG 8 cut(s) 381, 400, 407, 420, 563, 844, 953, 991
CviQI GTAC 3 cut(s) 384, 423, 466
DdeI CTNAG 3 cut(s) 506, 1014, 1122
DpnI GATC 5 cut(s) 209, 397, 828, 1167, 1181
DpnII GATC 5 cut(s) 207, 395, 826, 1165, 1179
DraI TTTAAA 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 245, 672
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 3 cut(s) 269, 526, 840
Eco57I CTGAAG 2 cut(s) 39, 204
Eco81I CCTNAGG 1 cut(s) 1122
Eco91I GGTNACC 1 cut(s) 1277
EcoO109I RGGNCCY 2 cut(s) 269, 358
EcoO65I GGTNACC 1 cut(s) 1277
EcoRII CCWGG 2 cut(s) 119, 354
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 2 cut(s) 245, 672
ErhI CCWWGG 2 cut(s) 245, 672
FaeI CATG 8 cut(s) 384, 403, 410, 423, 566, 847, 956, 994
FaqI GGGAC 5 cut(s) 161, 282, 539, 990, 1152
FatI CATG 8 cut(s) 380, 399, 406, 419, 562, 843, 952, 990
FauI CCCGC 1 cut(s) 516
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 5 cut(s) 999, 1101, 1338, 1353, 1362
FokI GGATG 2 cut(s) 491, 991
Fsp4HI GCNGC 5 cut(s) 999, 1101, 1338, 1353, 1362
FspAI RTGCGCAY 1 cut(s) 725
FspBI CTAG 4 cut(s) 273, 278, 1082, 1104
FspI TGCGCA 2 cut(s) 725, 819
GlaI GCGC 3 cut(s) 159, 725, 819
GluI GCNGC 5 cut(s) 999, 1101, 1338, 1353, 1362
GsaI CCCAGC 2 cut(s) 171, 1176
GsuI CTGGAG 2 cut(s) 950, 1362
HaeIII GGCC 1 cut(s) 359
HapII CCGG 3 cut(s) 476, 529, 838
HhaI GCGC 3 cut(s) 160, 726, 820
Hin1II CATG 8 cut(s) 384, 403, 410, 423, 566, 847, 956, 994
Hin6I GCGC 3 cut(s) 158, 724, 818
HinP1I GCGC 3 cut(s) 158, 724, 818
HincII GTYRAC 2 cut(s) 72, 811
HindII GTYRAC 2 cut(s) 72, 811
HinfI GANTC 4 cut(s) 299, 493, 624, 799
HpaII CCGG 3 cut(s) 476, 529, 838
HphI GGTGA 1 cut(s) 1271
Hpy166II GTNNAC 3 cut(s) 72, 811, 988
Hpy188I TCNGA 4 cut(s) 758, 798, 831, 1209
Hpy8I GTNNAC 3 cut(s) 72, 811, 988
HpyAV CCTTC 2 cut(s) 367, 607
HpyCH4III ACNGT 4 cut(s) 330, 392, 754, 1322
HpyCH4IV ACGT 1 cut(s) 891
HpyCH4V TGCA 8 cut(s) 380, 869, 994, 1074, 1100, 1223, 1329, 1364
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 962, 1312, 1358, 1361
HpyF3I CTNAG 3 cut(s) 506, 1014, 1122
HpySE526I ACGT 1 cut(s) 891
Hsp92II CATG 8 cut(s) 384, 403, 410, 423, 566, 847, 956, 994
HspAI GCGC 3 cut(s) 158, 724, 818
Kpn2I TCCGGA 1 cut(s) 475
Kzo9I GATC 5 cut(s) 207, 395, 826, 1165, 1179
LmnI GCTCC 7 cut(s) 112, 446, 478, 1006, 1126, 1212, 1378
Lsp1109I GCAGC 5 cut(s) 1010, 1112, 1324, 1339, 1348
LweI GCATC 4 cut(s) 139, 292, 400, 856
MaeI CTAG 4 cut(s) 273, 278, 1082, 1104
MaeII ACGT 1 cut(s) 891
MaeIII GTNAC 1 cut(s) 1277
MalI GATC 5 cut(s) 209, 397, 828, 1167, 1181
MboI GATC 5 cut(s) 207, 395, 826, 1165, 1179
MboII GAAGA 9 cut(s) 32, 164, 331, 629, 650, 785, 1124, 1208, 1238
MflI RGATCY 1 cut(s) 395
MluCI AATT 7 cut(s) 56, 87, 146, 581, 632, 1030, 1069
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 424
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 3 cut(s) 350, 1116, 1203
MseI TTAA 4 cut(s) 114, 570, 1044, 1384
MslI CAYNNNNRTG 2 cut(s) 1251, 1253
MspI CCGG 3 cut(s) 476, 529, 838
MspR9I CCNGG 2 cut(s) 121, 356
MvaI CCWGG 2 cut(s) 121, 356
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 5 cut(s) 164, 962, 1312, 1358, 1361
NdeII GATC 5 cut(s) 207, 395, 826, 1165, 1179
NlaIII CATG 8 cut(s) 384, 403, 410, 423, 566, 847, 956, 994
NlaIV GGNNCC 6 cut(s) 108, 270, 397, 527, 1206, 1380
NmeAIII GCCGAG 1 cut(s) 1381
NmuCI GTSAC 1 cut(s) 1277
NsbI TGCGCA 2 cut(s) 725, 819
NspI RCATGY 2 cut(s) 384, 994
OliI CACNNNNGTG 2 cut(s) 1251, 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PdmI GAANNNNTTC 3 cut(s) 350, 1116, 1203
PfeI GAWTC 3 cut(s) 299, 624, 799
PflFI GACNNNGTC 1 cut(s) 273
PinAI ACCGGT 1 cut(s) 528
PkrI GCNGC 5 cut(s) 1000, 1102, 1339, 1354, 1363
Ple19I CGATCG 1 cut(s) 1168
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Ppu21I YACGTR 1 cut(s) 892
PpuMI RGGWCCY 1 cut(s) 269
PsiI TTATAA 2 cut(s) 1026, 1035
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 119, 354
PspEI GGTNACC 1 cut(s) 1277
PspFI CCCAGC 2 cut(s) 167, 1172
PspGI CCWGG 2 cut(s) 119, 354
PspN4I GGNNCC 6 cut(s) 108, 270, 397, 527, 1206, 1380
PspPI GGNCC 4 cut(s) 269, 358, 526, 840
PspPPI RGGWCCY 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 1337
PsuI RGATCY 1 cut(s) 395
PsyI GACNNNGTC 1 cut(s) 273
PvuI CGATCG 1 cut(s) 1168
RsaI GTAC 3 cut(s) 385, 424, 467
RsaNI GTAC 3 cut(s) 384, 423, 466
RseI CAYNNNNRTG 2 cut(s) 1251, 1253
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 4 cut(s) 114, 570, 1044, 1384
SatI GCNGC 5 cut(s) 999, 1101, 1338, 1353, 1362
Sau3AI GATC 5 cut(s) 207, 395, 826, 1165, 1179
Sau96I GGNCC 4 cut(s) 269, 358, 526, 840
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 2 cut(s) 121, 356
SfaNI GCATC 4 cut(s) 139, 292, 400, 856
SinI GGWCC 3 cut(s) 269, 526, 840
SmiI ATTTAAAT 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 1251, 1253
Sse9I AATT 7 cut(s) 56, 87, 146, 581, 632, 1030, 1069
SsiI CCGC 2 cut(s) 523, 1202
SspMI CTAG 4 cut(s) 273, 278, 1082, 1104
StyD4I CCNGG 2 cut(s) 119, 354
StyI CCWWGG 2 cut(s) 245, 672
SwaI ATTTAAAT 1 cut(s) 115
TaaI ACNGT 4 cut(s) 330, 392, 754, 1322
TaiI ACGT 1 cut(s) 894
TaqI TCGA 5 cut(s) 71, 189, 598, 711, 1168
TasI AATT 7 cut(s) 56, 87, 146, 581, 632, 1030, 1069
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 3 cut(s) 299, 624, 799
Tru1I TTAA 4 cut(s) 114, 570, 1044, 1384
Tru9I TTAA 4 cut(s) 114, 570, 1044, 1384
TscAI CASTG 2 cut(s) 751, 922
TseFI GTSAC 1 cut(s) 1277
TseI GCWGC 5 cut(s) 998, 1100, 1337, 1352, 1361
Tsp45I GTSAC 1 cut(s) 1277
TspDTI ATGAA 5 cut(s) 416, 531, 594, 681, 941
TspRI CASTG 2 cut(s) 751, 922
Tth111I GACNNNGTC 1 cut(s) 273
VpaK11BI GGWCC 3 cut(s) 269, 526, 840
XbaI TCTAGA 2 cut(s) 277, 1081
XceI RCATGY 2 cut(s) 384, 994
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 3 cut(s) 350, 1116, 1203
XspI CTAG 4 cut(s) 273, 278, 1082, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.