Rh7BG061500

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001496
Physical Location & Seq
Reverse (-)
4104743 .. 4106631
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG061500.1

Sequence Viewer

Length: 1323 bp
ATGGTGTCGACAAATCGGCACATAATTGACAAATCGTTAGTGGCTCCATTTAAATCCAGGCAAGAGCATCGCAAGAACATTGAATTGGAAGAAGCGCGTAAGGCTGGGCTTGTACCTGCTGAAGTCGATAAGAATGGAAAGGAGATCAATCCTCATATACCCAAATATGTGGCTGATACACCTTGGTATATCAAAACCGAGGAGGGACCTAGTCTAGAGCATCAAAGAAAGCCCGAATCAAATGTGAATGGCAAGAAGAAATCACAGTATGACAGAGGTGCAAAGCTATTCCAGGCCCTTACATATAGGAAGGGTGCATGTACGAACTGTGGATCCATGAAACATGATGCCAAGTCATGTAGCGAAAGACCGAGGAAAGTTGGAGCAAAATGGACTGGCAAGTACATTGCTCCGGATGAGATGATAGAGACTCTTGGACTTCTCAGCTATGATGAAAAACGGGACCGGTGGAATGGATATAATCCATCAAGCTATGCCCATGTTATTAAGAGATATGAATTACAACAGGAAGCTCGAAACAAATACTTAAAGGAAGAACGAATCAAGAAATTAGAAGATGAGACTGATGATATCAGGGTAGATGAAGCCAAGGCTGATGAGAGCAAGCAAACAGACTTCGCAAAGGTCGAGAAGCGTGTGCGCACAACGGGTGGTGGAAGCACTGGAACTGTCAGAAACTTGCGTATTCGTGAGGACACGGCAAAATATCTTCGGAATCTTGATGTCAACTCTGCGCATTATGATCCGAAAAGCCGGTCCATGCGTGAAAACCCTAATCCAGATGCAGATCCGAGCGAGCAGTTTTACGTGGGAGATAATGTATTGAGAAACACTGGTCAAGCTCTGGAGTTCAGGCAGATGAACATTCATGCTTTGGAAGCATTTGAGAGGGGACAAGATGTTCACATGCAAGCAGCTCCATCCCAAGCTGAGTTTCTTTATAAAAATTATAAGGCGATTAAGGAGAGATTGACTTCACAGACGAATTGCACCATTCTAGAAAAGTATGGCAATGCAGCTAGTGGAGAAGAACTTCCTAAGGAGCTTCTACTGGGACAGAGCGAAAGAGATGTTGAATACGATCGAGCTGGGAGGATCATCAAGGGCGAGGAAGAAGCGGTTCCGAGGAGCAAATATGCAGAAGATGTCAGTATCAACAACCACACTTGTGTGTGGGGTTCGTGGTGGAAAGGTCACCAATGGGGGTACAAGTGTTGTAAGCAGTTTATGCGAAACAGTTATTGCACAGGTGCTGCTGGAGTTGAGGCTGCCGAGGCTGCAATACATATCATGGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

440

Amino Acids

50.33

Weight (kDa)

8.53

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 148 - 401 3.8e-89 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 963, 972
Acc16I TGCGCA 2 cut(s) 662, 756
Acc36I ACCTGC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 97
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 1 cut(s) 1139
AclWI GGATC 5 cut(s) 327, 340, 758, 803, 1124
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 4 cut(s) 114, 322, 404, 1229
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 83, 1097
AjnI CCWGG 2 cut(s) 56, 291
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 939, 971
AleI CACNNNNGTG 2 cut(s) 1188, 1190
AloI GAACNNNNNNTCC 4 cut(s) 317, 349, 906, 938
Alw26I GTCTC 2 cut(s) 422, 575
AlwI GGATC 5 cut(s) 327, 340, 758, 803, 1124
AlwNI CAGNNNCTG 1 cut(s) 1274
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 5 cut(s) 935, 1037, 1274, 1289, 1298
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
AsiGI ACCGGT 1 cut(s) 465
Asp700I GAANNNNTTC 2 cut(s) 1053, 1140
AspLEI GCGC 3 cut(s) 97, 663, 757
AspS9I GGNCC 4 cut(s) 206, 295, 463, 777
AsuHPI GGTGA 1 cut(s) 1208
AvaII GGWCC 3 cut(s) 206, 463, 777
AxyI CCTNAGG 1 cut(s) 1059
BaeI ACNNNNGTAYC 2 cut(s) 1219, 1252
BamHI GGATCC 1 cut(s) 332
BbvI GCAGC 5 cut(s) 947, 1049, 1261, 1276, 1285
BccI CCATC 2 cut(s) 493, 949
BceAI ACGGC 1 cut(s) 735
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 58, 293
BcoDI GTCTC 2 cut(s) 422, 575
BfaI CTAG 4 cut(s) 210, 215, 1019, 1041
BfuAI ACCTGC 1 cut(s) 124
BisI GCNGC 5 cut(s) 936, 1038, 1275, 1290, 1299
BlsI GCNGC 5 cut(s) 937, 1039, 1276, 1291, 1300
Bme1390I CCNGG 2 cut(s) 58, 293
Bme18I GGWCC 3 cut(s) 206, 463, 777
BmgT120I GGNCC 4 cut(s) 206, 295, 463, 777
BmiI GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1317
BmrFI CCNGG 2 cut(s) 58, 293
BmrI ACTGGG 1 cut(s) 1082
BmsI GCATC 4 cut(s) 76, 229, 337, 793
BmuI ACTGGG 1 cut(s) 1082
BpmI CTGGAG 2 cut(s) 887, 1299
BsaAI YACGTR 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 807
BsaJI CCNNGG 6 cut(s) 182, 198, 371, 609, 1145, 1293
BsaWI WCCGGW 2 cut(s) 412, 465
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bse118I RCCGGY 2 cut(s) 465, 774
Bse1I ACTGG 4 cut(s) 400, 688, 859, 1077
Bse21I CCTNAGG 1 cut(s) 1059
Bse3DI GCAATG 2 cut(s) 405, 1039
Bse8I GATNNNNATC 1 cut(s) 807
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 2 cut(s) 58, 293
BseDI CCNNGG 6 cut(s) 182, 198, 371, 609, 1145, 1293
BseGI GGATG 2 cut(s) 421, 941
BseJI GATNNNNATC 1 cut(s) 807
BseMI GCAATG 2 cut(s) 405, 1039
BseMII CTCAG 2 cut(s) 457, 942
BseNI ACTGG 4 cut(s) 400, 688, 859, 1077
BseRI GAGGAG 2 cut(s) 215, 1162
BseXI GCAGC 5 cut(s) 947, 1049, 1261, 1276, 1285
BseYI CCCAGC 2 cut(s) 104, 1109
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 1105
BshFI GGCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 465
BsiEI CGRYCG 1 cut(s) 1105
BsiSI CCGG 3 cut(s) 413, 466, 775
BslFI GGGAC 4 cut(s) 219, 476, 927, 1089
BsmAI GTCTC 2 cut(s) 422, 575
BsmFI GGGAC 4 cut(s) 219, 476, 927, 1089
BsnI GGCC 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
BspACI CCGC 1 cut(s) 1139
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 456, 943
BspEI TCCGGA 1 cut(s) 412
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1317
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 5 cut(s) 327, 340, 758, 803, 1124
BsrDI GCAATG 2 cut(s) 405, 1039
BsrFI RCCGGY 2 cut(s) 465, 774
BsrI ACTGG 4 cut(s) 400, 688, 859, 1077
BssAI RCCGGY 2 cut(s) 465, 774
BssECI CCNNGG 6 cut(s) 182, 198, 371, 609, 1145, 1293
BssMI GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
BssT1I CCWWGG 2 cut(s) 182, 609
Bst2UI CCWGG 2 cut(s) 58, 293
Bst4CI ACNGT 4 cut(s) 267, 329, 691, 1259
BstAPI GCANNNNNTGC 1 cut(s) 1249
BstBAI YACGTR 1 cut(s) 829
BstC8I GCNNGC 3 cut(s) 626, 818, 933
BstDEI CTNAG 3 cut(s) 443, 951, 1059
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 2 cut(s) 421, 941
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 3 cut(s) 97, 663, 757
BstKTI GATC 6 cut(s) 147, 335, 766, 811, 1105, 1119
BstMAI GTCTC 2 cut(s) 422, 575
BstMBI GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
BstMCI CGRYCG 1 cut(s) 1105
BstMWI GCNNNNNNNGC 5 cut(s) 101, 899, 1249, 1295, 1298
BstNI CCWGG 2 cut(s) 58, 293
BstNSI RCATGY 2 cut(s) 321, 931
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 2 cut(s) 56, 291
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 5 cut(s) 947, 1049, 1261, 1276, 1285
BstX2I RGATCY 2 cut(s) 332, 808
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 2 cut(s) 332, 808
Bsu36I CCTNAGG 1 cut(s) 1059
BsuRI GGCC 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 421, 941
BtsIMutI CAGTG 2 cut(s) 681, 852
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 626, 818, 933
CaiI CAGNNNCTG 1 cut(s) 1274
CfoI GCGC 3 cut(s) 97, 663, 757
Cfr10I RCCGGY 2 cut(s) 465, 774
Cfr13I GGNCC 4 cut(s) 206, 295, 463, 777
Csp6I GTAC 4 cut(s) 113, 321, 403, 1228
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 9 cut(s) 318, 337, 344, 357, 500, 781, 890, 928, 1312
CviQI GTAC 4 cut(s) 113, 321, 403, 1228
DdeI CTNAG 3 cut(s) 443, 951, 1059
DpnI GATC 6 cut(s) 146, 334, 765, 810, 1104, 1118
DpnII GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
DraI TTTAAA 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 182, 609
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 206, 463, 777
Eco57I CTGAAG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 1059
Eco91I GGTNACC 1 cut(s) 1214
EcoO109I RGGNCCY 2 cut(s) 206, 295
EcoO65I GGTNACC 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 56, 291
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 2 cut(s) 182, 609
ErhI CCWWGG 2 cut(s) 182, 609
FaeI CATG 9 cut(s) 321, 340, 347, 360, 503, 784, 893, 931, 1315
FaqI GGGAC 4 cut(s) 219, 476, 927, 1089
FatI CATG 9 cut(s) 317, 336, 343, 356, 499, 780, 889, 927, 1311
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 5 cut(s) 936, 1038, 1275, 1290, 1299
FokI GGATG 2 cut(s) 428, 928
Fsp4HI GCNGC 5 cut(s) 936, 1038, 1275, 1290, 1299
FspAI RTGCGCAY 1 cut(s) 662
FspBI CTAG 4 cut(s) 210, 215, 1019, 1041
FspI TGCGCA 2 cut(s) 662, 756
GlaI GCGC 3 cut(s) 96, 662, 756
GluI GCNGC 5 cut(s) 936, 1038, 1275, 1290, 1299
GsaI CCCAGC 2 cut(s) 108, 1113
GsuI CTGGAG 2 cut(s) 887, 1299
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 413, 466, 775
HhaI GCGC 3 cut(s) 97, 663, 757
Hin1II CATG 9 cut(s) 321, 340, 347, 360, 503, 784, 893, 931, 1315
Hin6I GCGC 3 cut(s) 95, 661, 755
HinP1I GCGC 3 cut(s) 95, 661, 755
HincII GTYRAC 2 cut(s) 9, 748
HindII GTYRAC 2 cut(s) 9, 748
HinfI GANTC 4 cut(s) 236, 430, 561, 736
HpaII CCGG 3 cut(s) 413, 466, 775
HphI GGTGA 1 cut(s) 1208
Hpy166II GTNNAC 3 cut(s) 9, 748, 925
Hpy188I TCNGA 5 cut(s) 695, 735, 768, 813, 1146
Hpy188III TCNNGA 9 cut(s) 215, 413, 565, 649, 710, 740, 800, 866, 1019
Hpy8I GTNNAC 3 cut(s) 9, 748, 925
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 4 cut(s) 267, 329, 691, 1259
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 9 cut(s) 281, 317, 806, 931, 1011, 1037, 1160, 1266, 1301
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 899, 1249, 1295, 1298
HpyF3I CTNAG 3 cut(s) 443, 951, 1059
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 9 cut(s) 321, 340, 347, 360, 503, 784, 893, 931, 1315
HspAI GCGC 3 cut(s) 95, 661, 755
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
LmnI GCTCC 7 cut(s) 49, 383, 415, 943, 1063, 1149, 1315
Lsp1109I GCAGC 5 cut(s) 947, 1049, 1261, 1276, 1285
LweI GCATC 4 cut(s) 76, 229, 337, 793
MaeI CTAG 4 cut(s) 210, 215, 1019, 1041
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 1 cut(s) 1214
MalI GATC 6 cut(s) 146, 334, 765, 810, 1104, 1118
MboI GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
MboII GAAGA 8 cut(s) 101, 268, 566, 587, 722, 1061, 1145, 1175
MflI RGATCY 2 cut(s) 332, 808
MluCI AATT 6 cut(s) 24, 83, 518, 569, 967, 1006
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 361
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 2 cut(s) 1053, 1140
MseI TTAA 5 cut(s) 51, 507, 548, 981, 1321
MslI CAYNNNNRTG 2 cut(s) 1188, 1190
MspI CCGG 3 cut(s) 413, 466, 775
MspR9I CCNGG 2 cut(s) 58, 293
MvaI CCWGG 2 cut(s) 58, 293
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 5 cut(s) 101, 899, 1249, 1295, 1298
NdeII GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
NlaIII CATG 9 cut(s) 321, 340, 347, 360, 503, 784, 893, 931, 1315
NlaIV GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1317
NmeAIII GCCGAG 1 cut(s) 1318
NmuCI GTSAC 1 cut(s) 1214
NsbI TGCGCA 2 cut(s) 662, 756
NspI RCATGY 2 cut(s) 321, 931
OliI CACNNNNGTG 2 cut(s) 1188, 1190
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PdmI GAANNNNTTC 2 cut(s) 1053, 1140
PfeI GAWTC 3 cut(s) 236, 561, 736
PflFI GACNNNGTC 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 5 cut(s) 937, 1039, 1276, 1291, 1300
Ple19I CGATCG 1 cut(s) 1105
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 829
PpuMI RGGWCCY 1 cut(s) 206
PsiI TTATAA 2 cut(s) 963, 972
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 56, 291
PspEI GGTNACC 1 cut(s) 1214
PspFI CCCAGC 2 cut(s) 104, 1109
PspGI CCWGG 2 cut(s) 56, 291
PspN4I GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1317
PspPI GGNCC 4 cut(s) 206, 295, 463, 777
PspPPI RGGWCCY 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 1274
PsuI RGATCY 2 cut(s) 332, 808
PsyI GACNNNGTC 1 cut(s) 210
PvuI CGATCG 1 cut(s) 1105
RsaI GTAC 4 cut(s) 114, 322, 404, 1229
RsaNI GTAC 4 cut(s) 113, 321, 403, 1228
RseI CAYNNNNRTG 2 cut(s) 1188, 1190
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 5 cut(s) 51, 507, 548, 981, 1321
SatI GCNGC 5 cut(s) 936, 1038, 1275, 1290, 1299
Sau3AI GATC 6 cut(s) 144, 332, 763, 808, 1102, 1116
Sau96I GGNCC 4 cut(s) 206, 295, 463, 777
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 58, 293
SfaNI GCATC 4 cut(s) 76, 229, 337, 793
SinI GGWCC 3 cut(s) 206, 463, 777
SmiI ATTTAAAT 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 1188, 1190
Sse9I AATT 6 cut(s) 24, 83, 518, 569, 967, 1006
SsiI CCGC 1 cut(s) 1139
SspMI CTAG 4 cut(s) 210, 215, 1019, 1041
StyD4I CCNGG 2 cut(s) 56, 291
StyI CCWWGG 2 cut(s) 182, 609
SwaI ATTTAAAT 1 cut(s) 52
TaaI ACNGT 4 cut(s) 267, 329, 691, 1259
TaiI ACGT 1 cut(s) 831
TaqI TCGA 5 cut(s) 8, 126, 535, 648, 1105
TaqII GACCGA 1 cut(s) 385
TasI AATT 6 cut(s) 24, 83, 518, 569, 967, 1006
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 3 cut(s) 236, 561, 736
Tru1I TTAA 5 cut(s) 51, 507, 548, 981, 1321
Tru9I TTAA 5 cut(s) 51, 507, 548, 981, 1321
TscAI CASTG 2 cut(s) 688, 859
TseFI GTSAC 1 cut(s) 1214
TseI GCWGC 5 cut(s) 935, 1037, 1274, 1289, 1298
Tsp45I GTSAC 1 cut(s) 1214
TspDTI ATGAA 6 cut(s) 353, 468, 531, 618, 878, 896
TspRI CASTG 2 cut(s) 688, 859
Tth111I GACNNNGTC 1 cut(s) 210
VpaK11BI GGWCC 3 cut(s) 206, 463, 777
XbaI TCTAGA 2 cut(s) 214, 1018
XceI RCATGY 2 cut(s) 321, 931
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 2 cut(s) 1053, 1140
XspI CTAG 4 cut(s) 210, 215, 1019, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.