Rh6DG303700

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001496
Physical Location & Seq
Reverse (-)
50355154 .. 50358920
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG303700.1

Sequence Viewer

Length: 1320 bp
ATGTCACATGATATCAAGTCTTGTATGGAAAGACCCAGGAAAGTGGGAGCAAAGTATACAAACAAGCACATTGCTCCTGATGAGAAGGTAGAGACTTTTGAGCTCGACTATGATGGAAAACGGGACCGCTGGAATGGATATGATGCATCATCCTATGCCCTAGTCATTGAGAGATATGAATCAAGAGATGAAGCACGAAGGAAATTCTTAAAAGAACAACAACTGAAAAAATTGGAGGGAAAAAATAATAACCAAAATGGTGAGGATGGGGTTAGTGAAGAGGATGAAGAGGAGGCTGAGGATGAGGATGATCTGAGGGTGGATGAAGCCAAGGTTGATGAGAGCAAACAAATGGACTTTGCAAAGGTTGAGAAGCGTGTTCGTACAACAGGTGGTGGGAGCACAGGAACTGTCAGGAATTTGCGTATTCGTGAGGATACAGCAAAATATCTTCTAAACCTTGACGTCAACTCTGCACATTATGATCCCAAAACCCGATCCATGCGTGAGGATCCTCTTCCAGATGCTGATCCAAATGAGAAATTTTACGCGGGTGATAACAGATATAGAAATAGTGGTCAAGCTATGGAATTCAAGCAGCTGAATATCCATGCTTGGGAAGCATTTGACAAAGGCCAAGACATTCACATGCAAGCAGCCCCGTCCCAGGCTGAATTACTTTATAAGAACTATAAAGTAATTAAGGAGAATTTGAAGTCGCACACAAAGGACACCATTCTAGAGAAGTATGGCAATGCAGCTAGTGAAGAAGCAATTCCTAGGGAGCTTCTACTGGGACAGAGTGAAAGAGAAGTTGAATATGATCGTGCTGGCAGGATTATCAAAGGACAGGAAACCACACTTCCCAGAAGCAAGTATGAAGAAGATGTCTATGTCAACAACCACACCTGCGTATGGGGTTCATGGTGGAAGGATCATCAATGGGGATACAGGTGTTGTCAGCAGTTAACTCGAAACAGCTACTGCACAGGTGCTGCTGGAATAGAGGCTGCTGAGGCTGCATCAGATCTGATGAAGGCCAATATTGCTCGTAAAGAGGCTGCTGGAGAAATGCCTCCTCCTGCAGAGGAGAAAAGACCTGCTACTTGGGGAACTGACATCCCAGAAGATTTGGTTTTAGATGAGAAACTACTTGCTGAAGCTCTTAAAAAAGAGGATGCAAGAAGGAAAGAAGAGAGAGATGAGAGAAAACGCAAATACAATGTCAGATGGAACGATGAGGTTACTGCAGAGGATATGGAGGCTTACAGGATGAAGAAAGTTCACCATGATGATCCAATGAAGGAGTTTCTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

439

Amino Acids

50.95

Weight (kDa)

5.3

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 35 - 308 1.3e-95 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AarI CACCTGC 1 cut(s) 917
AatII GACGTC 1 cut(s) 468
Acc36I ACCTGC 2 cut(s) 917, 1108
AccI GTMKAC 1 cut(s) 56
AccII CGCG 1 cut(s) 551
AciI CCGC 2 cut(s) 127, 551
AclWI GGATC 7 cut(s) 479, 492, 506, 519, 524, 942, 1289
AcsI RAATTY 5 cut(s) 203, 418, 542, 590, 709
AcuI CTGAAG 1 cut(s) 1179
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 3 cut(s) 616, 667, 915
AgsI TTSAA 3 cut(s) 595, 715, 818
AjnI CCWGG 2 cut(s) 35, 666
AluBI AGCT 7 cut(s) 103, 584, 601, 761, 787, 981, 1163
AluI AGCT 7 cut(s) 103, 584, 601, 761, 787, 981, 1163
Alw21I GWGCWC 2 cut(s) 105, 404
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 7 cut(s) 479, 492, 506, 519, 524, 942, 1289
AlwNI CAGNNNCTG 4 cut(s) 410, 527, 984, 995
AoxI GGCC 2 cut(s) 634, 1038
ApeKI GCWGC 7 cut(s) 598, 656, 758, 995, 1010, 1019, 1061
ApoI RAATTY 5 cut(s) 203, 418, 542, 590, 709
ArsI GACNNNNNNTTYG 2 cut(s) 1209, 1241
Asp700I GAANNNNTTC 1 cut(s) 774
AspA2I CCTAGG 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 3 cut(s) 272, 566, 1277
AvaII GGWCC 1 cut(s) 124
AvrII CCTAGG 1 cut(s) 779
BaeI ACNNNNGTAYC 2 cut(s) 940, 973
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 105, 404
BbvCI CCTCAGC 2 cut(s) 297, 1014
BbvI GCAGC 7 cut(s) 610, 668, 770, 982, 997, 1006, 1048
BccI CCATC 3 cut(s) 107, 260, 1224
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciT130I CCWGG 2 cut(s) 37, 668
BciVI GTATCC 2 cut(s) 430, 941
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 4 cut(s) 161, 740, 762, 780
BfmI CTRYAG 2 cut(s) 1083, 1248
BfuAI ACCTGC 2 cut(s) 917, 1108
BfuI GTATCC 2 cut(s) 430, 941
BglII AGATCT 1 cut(s) 1027
BisI GCNGC 7 cut(s) 599, 657, 759, 996, 1011, 1020, 1062
BlnI CCTAGG 1 cut(s) 779
BlsI GCNGC 7 cut(s) 600, 658, 760, 997, 1012, 1021, 1063
Bme1390I CCNGG 2 cut(s) 37, 668
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 125, 513
BmrFI CCNGG 2 cut(s) 37, 668
BmrI ACTGGG 1 cut(s) 803
BmsI GCATC 5 cut(s) 133, 155, 514, 1031, 1168
BmuI ACTGGG 1 cut(s) 803
BpmI CTGGAG 1 cut(s) 1086
Bpu10I CCTNAGC 2 cut(s) 297, 1014
BsaBI GATNNNNATC 2 cut(s) 178, 528
BsaHI GRCGYC 1 cut(s) 465
BsaJI CCNNGG 4 cut(s) 35, 330, 666, 779
Bsc4I CCNNNNNNNGG 3 cut(s) 616, 667, 915
Bse1I ACTGG 1 cut(s) 798
Bse3DI GCAATG 2 cut(s) 69, 760
Bse8I GATNNNNATC 2 cut(s) 178, 528
BseBI CCWGG 2 cut(s) 37, 668
BseDI CCNNGG 4 cut(s) 35, 330, 666, 779
BseGI GGATG 9 cut(s) 149, 271, 289, 307, 313, 328, 1119, 1183, 1278
BseJI GATNNNNATC 2 cut(s) 178, 528
BseLI CCNNNNNNNGG 3 cut(s) 616, 667, 915
BseMI GCAATG 2 cut(s) 69, 760
BseMII CTCAG 3 cut(s) 288, 305, 1005
BseNI ACTGG 1 cut(s) 798
BseRI GAGGAG 3 cut(s) 305, 1068, 1103
BseXI GCAGC 7 cut(s) 610, 668, 770, 982, 997, 1006, 1048
BsgI GTGCAG 2 cut(s) 459, 970
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 2 cut(s) 636, 1040
BsiHKAI GWGCWC 2 cut(s) 105, 404
BslFI GGGAC 3 cut(s) 137, 649, 810
BslI CCNNNNNNNGG 3 cut(s) 616, 667, 915
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 3 cut(s) 137, 649, 810
BsnI GGCC 2 cut(s) 636, 1040
Bsp1286I GDGCHC 2 cut(s) 105, 404
Bsp143I GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
BspACI CCGC 2 cut(s) 127, 551
BspANI GGCC 2 cut(s) 636, 1040
BspCNI CTCAG 3 cut(s) 289, 306, 1006
BspFNI CGCG 1 cut(s) 551
BspLI GGNNCC 2 cut(s) 125, 513
BspMAI CTGCAG 2 cut(s) 1087, 1252
BspMI ACCTGC 2 cut(s) 917, 1108
BspPI GGATC 7 cut(s) 479, 492, 506, 519, 524, 942, 1289
BsrDI GCAATG 2 cut(s) 69, 760
BsrI ACTGG 1 cut(s) 798
BssECI CCNNGG 4 cut(s) 35, 330, 666, 779
BssMI GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
BssNAI GTATAC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 465
BssT1I CCWWGG 2 cut(s) 330, 779
Bst1107I GTATAC 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 37, 668
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 4 cut(s) 273, 282, 522, 1188
BstACI GRCGYC 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 654, 832
BstDEI CTNAG 3 cut(s) 297, 314, 1014
BstF5I GGATG 9 cut(s) 149, 271, 289, 307, 313, 328, 1119, 1183, 1278
BstFNI CGCG 1 cut(s) 551
BstKTI GATC 9 cut(s) 313, 487, 500, 514, 532, 826, 937, 1030, 1297
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
BstMWI GCNNNNNNNGC 4 cut(s) 620, 1016, 1019, 1046
BstNI CCWGG 2 cut(s) 37, 668
BstNSI RCATGY 1 cut(s) 652
BstSCI CCNGG 2 cut(s) 35, 666
BstSFI CTRYAG 2 cut(s) 1083, 1248
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 7 cut(s) 610, 668, 770, 982, 997, 1006, 1048
BstX2I RGATCY 2 cut(s) 511, 1027
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 2 cut(s) 511, 1027
BstZ17I GTATAC 1 cut(s) 57
BsuI GTATCC 2 cut(s) 430, 941
BsuRI GGCC 2 cut(s) 636, 1040
BtsCI GGATG 9 cut(s) 149, 271, 289, 307, 313, 328, 1119, 1183, 1278
BveI ACCTGC 2 cut(s) 917, 1108
Cac8I GCNNGC 2 cut(s) 654, 832
CaiI CAGNNNCTG 4 cut(s) 410, 527, 984, 995
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 384
CviAII CATG 6 cut(s) 8, 502, 611, 649, 924, 1289
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 3 cut(s) 297, 314, 1014
DpnI GATC 9 cut(s) 312, 486, 499, 513, 531, 825, 936, 1029, 1296
DpnII GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
Eam1104I CTCTTC 4 cut(s) 273, 282, 522, 1188
EarI CTCTTC 4 cut(s) 273, 282, 522, 1188
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 330, 779
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 1179
EcoICRI GAGCTC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 35, 666
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 330, 779
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 330, 779
FaeI CATG 6 cut(s) 11, 505, 614, 652, 927, 1292
FaqI GGGAC 3 cut(s) 137, 649, 810
FatI CATG 6 cut(s) 7, 501, 610, 648, 923, 1288
FauI CCCGC 1 cut(s) 544
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 7 cut(s) 599, 657, 759, 996, 1011, 1020, 1062
FokI GGATG 9 cut(s) 136, 278, 296, 314, 320, 335, 1106, 1190, 1285
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 7 cut(s) 599, 657, 759, 996, 1011, 1020, 1062
FspBI CTAG 4 cut(s) 161, 740, 762, 780
GluI GCNGC 7 cut(s) 599, 657, 759, 996, 1011, 1020, 1062
GsuI CTGGAG 1 cut(s) 1086
HaeIII GGCC 2 cut(s) 636, 1040
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 6 cut(s) 11, 505, 614, 652, 927, 1292
HincII GTYRAC 3 cut(s) 469, 898, 969
HindII GTYRAC 3 cut(s) 469, 898, 969
HinfI GANTC 1 cut(s) 179
HpaI GTTAAC 1 cut(s) 969
HphI GGTGA 3 cut(s) 272, 566, 1277
Hpy166II GTNNAC 5 cut(s) 57, 469, 898, 969, 1285
Hpy188I TCNGA 4 cut(s) 315, 1027, 1032, 1229
Hpy188III TCNNGA 6 cut(s) 77, 183, 415, 431, 521, 740
Hpy8I GTNNAC 5 cut(s) 57, 469, 898, 969, 1285
HpyAV CCTTC 6 cut(s) 79, 192, 925, 1030, 1179, 1297
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 465
HpyF10VI GCNNNNNNNGC 4 cut(s) 620, 1016, 1019, 1046
HpyF3I CTNAG 3 cut(s) 297, 314, 1014
HpySE526I ACGT 1 cut(s) 465
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 6 cut(s) 11, 505, 614, 652, 927, 1292
KspAI GTTAAC 1 cut(s) 969
Kzo9I GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
LmnI GCTCC 4 cut(s) 47, 79, 399, 784
Lsp1109I GCAGC 7 cut(s) 610, 668, 770, 982, 997, 1006, 1048
LweI GCATC 5 cut(s) 133, 155, 514, 1031, 1168
MaeI CTAG 4 cut(s) 161, 740, 762, 780
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 3, 1243
MalI GATC 9 cut(s) 312, 486, 499, 513, 531, 825, 936, 1029, 1296
MboI GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
MflI RGATCY 2 cut(s) 511, 1027
MhlI GDGCHC 2 cut(s) 105, 404
MluCI AATT 9 cut(s) 203, 230, 418, 542, 590, 674, 699, 709, 774
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 4 cut(s) 209, 702, 968, 1167
MslI CAYNNNNRTG 2 cut(s) 647, 1290
MspA1I CMGCKG 2 cut(s) 129, 601
MspR9I CCNGG 2 cut(s) 37, 668
MvaI CCWGG 2 cut(s) 37, 668
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 4 cut(s) 620, 1016, 1019, 1046
NdeII GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
NlaIII CATG 6 cut(s) 11, 505, 614, 652, 927, 1292
NlaIV GGNNCC 2 cut(s) 125, 513
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 652
PaqCI CACCTGC 1 cut(s) 917
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 7 cut(s) 600, 658, 760, 997, 1012, 1021, 1063
PsiI TTATAA 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 35, 666
PspGI CCWGG 2 cut(s) 35, 666
PspN4I GGNNCC 2 cut(s) 125, 513
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 2 cut(s) 1087, 1252
PstNI CAGNNNCTG 4 cut(s) 410, 527, 984, 995
PsuI RGATCY 2 cut(s) 511, 1027
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 2 cut(s) 647, 1290
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 4 cut(s) 209, 702, 968, 1167
SatI GCNGC 7 cut(s) 599, 657, 759, 996, 1011, 1020, 1062
Sau3AI GATC 9 cut(s) 310, 484, 497, 511, 529, 823, 934, 1027, 1294
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 37, 668
SduI GDGCHC 2 cut(s) 105, 404
SfaNI GCATC 5 cut(s) 133, 155, 514, 1031, 1168
SfcI CTRYAG 2 cut(s) 1083, 1248
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 2 cut(s) 647, 1290
Sse9I AATT 9 cut(s) 203, 230, 418, 542, 590, 674, 699, 709, 774
SsiI CCGC 2 cut(s) 127, 551
SspI AATATT 1 cut(s) 1045
SspMI CTAG 4 cut(s) 161, 740, 762, 780
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 35, 666
StyI CCWWGG 2 cut(s) 330, 779
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 468
TaqI TCGA 2 cut(s) 105, 973
TasI AATT 9 cut(s) 203, 230, 418, 542, 590, 674, 699, 709, 774
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 4 cut(s) 209, 702, 968, 1167
Tru9I TTAA 4 cut(s) 209, 702, 968, 1167
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 7 cut(s) 598, 656, 758, 995, 1010, 1019, 1061
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 9 cut(s) 192, 204, 300, 339, 894, 912, 1049, 1289, 1316
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 5 cut(s) 203, 418, 542, 590, 709
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 1 cut(s) 652
XmaJI CCTAGG 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 4 cut(s) 161, 740, 762, 780
ZraI GACGTC 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.