Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001496

Physical Location & Seq

Genomic Coordinates Reverse (-)

4290692 .. 4292942

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAACATGATGCCAAGTCATGTACCGAAAGAACGAGGAAAGTTGGAGCAAAATGGACTGGCAAGTACATTGCTCCCGATGAGATGATAGAGACTCTTGCACTTCTCAGCTATGATGAAAAGCGGGACCGGTGGAATGGATATAATCCATCAAGCTATGCCCATGTTATTAAGAGATATGAATTACATCAGGAAGCTCGAAACAAATACTTGAAGGAAGAACGAATCAAGAAATTAGAAGATGAGACTGATGATATCAGGGTAGATGAAGCCAAGGCTGATGAGAGCAAGCAAACAGACTTCGCAAAGGTCGAGAAGCGTGTGCGCACAACGGGTGGTGGAAGCACTGGAACTGTCAGAAACTTGCGTATTCGTGAGGACACAGCAAAATATCTTCGGAATCTTGATGTCAACTCTGCGCATTATGATCCGAAAAGCCGGTCCATGCGTGAAAACCCTAATCCAGATGCAGATCCGAACGAGCAGTTTTACGTGGGAGATAATGTATGGAGAAACACTGGTCAAGCTCTGGAGTTCGGGCAGATGAACATTCATGCTTTGGAAGCATTTGAGAGGGGACAAGATGTTCACATGCAAGCAGCTCCATCCCAAGCTGAGTTTCTTTATAAAAATTATAAGGCGATTAAGGAGAGATTGACTTCACAGACGAATTGCACCATTCTAGAAAAGTATGGCAATGCAGCTAGTGGAGAAGAACTTCCTAAGGAGCTTCTACTGGGACAGAGCGAAAGAGATGTTGAATACGATCGATCTGGGAGGATCATCAAGGGCAAGGAAGAAGCGGTTCCGAGGAGCAAATATGCAGAAGATGTCAGTATCAACAATCATACTTGTGTGTGGGGTTCGTGGTGGAAAGGTCACCAATGGGGCTACAAGTGTTGTAAGCAGTTTATGCGAAACAGTTATTGCACAGGTGCTGCTGGAGTTGAGGCTGCCGAGGCTGCAATACATCTCTTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

328

Amino Acids

37.68

Weight (kDa)

6.78

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Slu7	PF11708	36 - 289	3.1e-89	Pre-mRNA splicing Prp18-interacting factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65660 AT3G45950 AT4G37120
fragaria_vesca	FvH4_2g21480 FvH4_4g03640 FvH4_5g13320
malus_domestica	MD05G1197300.v1.1 MD10G1184000.v1.1 MD16G1219100.v1.1
prunus_persica	Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.8G223800_v2.0.a1
pyrus_communis	pycom05g18440 pycom10g15930 pycom16g18260
rosa_chinensis	RchiOBHm_Chr4g0393021 RchiOBHm_Chr6g0288131 RchiOBHm_Chr7g0183821
rosa_laevigata	RLG00000005020 RLG00000009774
rosa_multiflora	Rmu_sc0003610.1_g000043 Rmu_sc0010766.1_g000006 Rmu_sc0034700.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270180 Rroxscaffold_5G00338120 Rroxscaffold_7G00180470
rosa_rugosa	Rorug04G0002700 Rorug04G0002800 Rorug06G0194300 Rorug06G0460700 Rorug06G0460800
rosa_samantha	Rh4AG045400 Rh4BG041400 Rh4CG049000 Rh4DG043300 Rh6AG304700 Rh6BG310700 Rh6CG318800 Rh6DG303700 Rh7AG061400 Rh7BG061500 Rh7CG063100 Rh7DG061500
rosa_wichuraiana	Rw4G003580 Rw6G026360 Rw7G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	627, 636
Acc16I	TGCGCA	2 cut(s)	326, 420
AciI	CCGC	2 cut(s)	124, 803
AclWI	GGATC	3 cut(s)	422, 467, 788
AfaI	GTAC	2 cut(s)	25, 68
AgeI	ACCGGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	214, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AloI	GAACNNNNNNTCC	2 cut(s)	570, 602
AluBI	AGCT	8 cut(s)	111, 156, 197, 527, 602, 614, 704, 730
AluI	AGCT	8 cut(s)	111, 156, 197, 527, 602, 614, 704, 730
Alw26I	GTCTC	2 cut(s)	86, 239
AlwI	GGATC	3 cut(s)	422, 467, 788
AlwNI	CAGNNNCTG	1 cut(s)	938
ApeKI	GCWGC	5 cut(s)	599, 701, 938, 953, 962
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	129
Asp700I	GAANNNNTTC	2 cut(s)	717, 804
AspLEI	GCGC	2 cut(s)	327, 421
AspS9I	GGNCC	2 cut(s)	127, 441
AsuHPI	GGTGA	1 cut(s)	872
AvaII	GGWCC	2 cut(s)	127, 441
AxyI	CCTNAGG	1 cut(s)	723
BbvI	GCAGC	5 cut(s)	611, 713, 925, 940, 949
BccI	CCATC	2 cut(s)	157, 613
BcoDI	GTCTC	2 cut(s)	86, 239
BfaI	CTAG	2 cut(s)	683, 705
BisI	GCNGC	5 cut(s)	600, 702, 939, 954, 963
BlsI	GCNGC	5 cut(s)	601, 703, 940, 955, 964
Bme18I	GGWCC	2 cut(s)	127, 441
BmgT120I	GGNCC	2 cut(s)	127, 441
BmiI	GGNNCC	3 cut(s)	128, 807, 981
BmrI	ACTGGG	1 cut(s)	746
BmsI	GCATC	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	746
BpmI	CTGGAG	2 cut(s)	551, 963
Bsa29I	ATCGAT	1 cut(s)	769
BsaAI	YACGTR	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	273, 809, 957
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bse118I	RCCGGY	2 cut(s)	129, 438
Bse1I	ACTGG	4 cut(s)	64, 352, 523, 741
Bse21I	CCTNAGG	1 cut(s)	723
Bse3DI	GCAATG	2 cut(s)	69, 703
Bse8I	GATNNNNATC	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	769
BseDI	CCNNGG	3 cut(s)	273, 809, 957
BseGI	GGATG	1 cut(s)	605
BseJI	GATNNNNATC	1 cut(s)	471
BseMI	GCAATG	2 cut(s)	69, 703
BseMII	CTCAG	2 cut(s)	121, 606
BseNI	ACTGG	4 cut(s)	64, 352, 523, 741
BseRI	GAGGAG	1 cut(s)	826
BseXI	GCAGC	5 cut(s)	611, 713, 925, 940, 949
Bsh1285I	CGRYCG	1 cut(s)	769
BshTI	ACCGGT	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	769
BsiEI	CGRYCG	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	130, 439
BslFI	GGGAC	3 cut(s)	140, 591, 753
BsmAI	GTCTC	2 cut(s)	86, 239
BsmFI	GGGAC	3 cut(s)	140, 591, 753
Bsp143I	GATC	5 cut(s)	427, 472, 766, 770, 780
BspACI	CCGC	2 cut(s)	124, 803
BspCNI	CTCAG	2 cut(s)	120, 607
BspDI	ATCGAT	1 cut(s)	769
BspLI	GGNNCC	3 cut(s)	128, 807, 981
BspPI	GGATC	3 cut(s)	422, 467, 788
BsrDI	GCAATG	2 cut(s)	69, 703
BsrFI	RCCGGY	2 cut(s)	129, 438
BsrI	ACTGG	4 cut(s)	64, 352, 523, 741
BssAI	RCCGGY	2 cut(s)	129, 438
BssECI	CCNNGG	3 cut(s)	273, 809, 957
BssMI	GATC	5 cut(s)	427, 472, 766, 770, 780
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	355, 923
BstAPI	GCANNNNNTGC	1 cut(s)	913
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	290, 597
BstDEI	CTNAG	3 cut(s)	107, 615, 723
BstEII	GGTNACC	1 cut(s)	878
BstF5I	GGATG	1 cut(s)	605
BstHHI	GCGC	2 cut(s)	327, 421
BstKTI	GATC	5 cut(s)	430, 475, 769, 773, 783
BstMAI	GTCTC	2 cut(s)	86, 239
BstMBI	GATC	5 cut(s)	427, 472, 766, 770, 780
BstMCI	CGRYCG	1 cut(s)	769
BstMWI	GCNNNNNNNGC	4 cut(s)	563, 913, 959, 962
BstNSI	RCATGY	1 cut(s)	595
BstPI	GGTNACC	1 cut(s)	878
BstV1I	GCAGC	5 cut(s)	611, 713, 925, 940, 949
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu15I	ATCGAT	1 cut(s)	769
Bsu36I	CCTNAGG	1 cut(s)	723
BsuTUI	ATCGAT	1 cut(s)	769
BtsCI	GGATG	1 cut(s)	605
BtsIMutI	CAGTG	2 cut(s)	345, 516
Cac8I	GCNNGC	2 cut(s)	290, 597
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	2 cut(s)	327, 421
Cfr10I	RCCGGY	2 cut(s)	129, 438
Cfr13I	GGNCC	2 cut(s)	127, 441
ClaI	ATCGAT	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	24, 67
CspAI	ACCGGT	1 cut(s)	129
CviAII	CATG	6 cut(s)	8, 21, 164, 445, 554, 592
CviQI	GTAC	2 cut(s)	24, 67
DdeI	CTNAG	3 cut(s)	107, 615, 723
DpnI	GATC	5 cut(s)	429, 474, 768, 772, 782
DpnII	GATC	5 cut(s)	427, 472, 766, 770, 780
Eco130I	CCWWGG	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	127, 441
Eco81I	CCTNAGG	1 cut(s)	723
Eco91I	GGTNACC	1 cut(s)	878
EcoO65I	GGTNACC	1 cut(s)	878
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	6 cut(s)	11, 24, 167, 448, 557, 595
FaqI	GGGAC	3 cut(s)	140, 591, 753
FatI	CATG	6 cut(s)	7, 20, 163, 444, 553, 591
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	5 cut(s)	600, 702, 939, 954, 963
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	5 cut(s)	600, 702, 939, 954, 963
FspAI	RTGCGCAY	1 cut(s)	326
FspBI	CTAG	2 cut(s)	683, 705
FspI	TGCGCA	2 cut(s)	326, 420
GlaI	GCGC	2 cut(s)	326, 420
GluI	GCNGC	5 cut(s)	600, 702, 939, 954, 963
GsuI	CTGGAG	2 cut(s)	551, 963
HapII	CCGG	2 cut(s)	130, 439
HhaI	GCGC	2 cut(s)	327, 421
Hin1II	CATG	6 cut(s)	11, 24, 167, 448, 557, 595
Hin6I	GCGC	2 cut(s)	325, 419
HinP1I	GCGC	2 cut(s)	325, 419
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	94, 225, 400
HpaII	CCGG	2 cut(s)	130, 439
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	2 cut(s)	412, 589
Hpy188I	TCNGA	5 cut(s)	359, 399, 432, 477, 810
Hpy188III	TCNNGA	9 cut(s)	77, 191, 229, 313, 374, 404, 464, 530, 683
Hpy8I	GTNNAC	2 cut(s)	412, 589
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	355, 923
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	8 cut(s)	101, 470, 595, 675, 701, 824, 930, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	563, 913, 959, 962
HpyF3I	CTNAG	3 cut(s)	107, 615, 723
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	11, 24, 167, 448, 557, 595
HspAI	GCGC	2 cut(s)	325, 419
Kzo9I	GATC	5 cut(s)	427, 472, 766, 770, 780
LmnI	GCTCC	6 cut(s)	47, 79, 607, 727, 813, 979
Lsp1109I	GCAGC	5 cut(s)	611, 713, 925, 940, 949
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	683, 705
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	5 cut(s)	429, 474, 768, 772, 782
MboI	GATC	5 cut(s)	427, 472, 766, 770, 780
MboII	GAAGA	6 cut(s)	230, 251, 386, 725, 809, 839
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	4 cut(s)	182, 233, 631, 670
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	7 cut(s)	30, 370, 567, 771, 804, 943, 952
MroXI	GAANNNNTTC	2 cut(s)	717, 804
MseI	TTAA	3 cut(s)	171, 645, 985
MslI	CAYNNNNRTG	1 cut(s)	852
MspI	CCGG	2 cut(s)	130, 439
MwoI	GCNNNNNNNGC	4 cut(s)	563, 913, 959, 962
NdeII	GATC	5 cut(s)	427, 472, 766, 770, 780
NlaIII	CATG	6 cut(s)	11, 24, 167, 448, 557, 595
NlaIV	GGNNCC	3 cut(s)	128, 807, 981
NmeAIII	GCCGAG	1 cut(s)	982
NmuCI	GTSAC	1 cut(s)	878
NsbI	TGCGCA	2 cut(s)	326, 420
NspI	RCATGY	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	717, 804
PfeI	GAWTC	2 cut(s)	225, 400
PinAI	ACCGGT	1 cut(s)	129
PkrI	GCNGC	5 cut(s)	601, 703, 940, 955, 964
Ple19I	CGATCG	1 cut(s)	769
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	493
PsiI	TTATAA	2 cut(s)	627, 636
PspEI	GGTNACC	1 cut(s)	878
PspN4I	GGNNCC	3 cut(s)	128, 807, 981
PspPI	GGNCC	2 cut(s)	127, 441
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	472
PvuI	CGATCG	1 cut(s)	769
RsaI	GTAC	2 cut(s)	25, 68
RsaNI	GTAC	2 cut(s)	24, 67
RseI	CAYNNNNRTG	1 cut(s)	852
SaqAI	TTAA	3 cut(s)	171, 645, 985
SatI	GCNGC	5 cut(s)	600, 702, 939, 954, 963
Sau3AI	GATC	5 cut(s)	427, 472, 766, 770, 780
Sau96I	GGNCC	2 cut(s)	127, 441
SchI	GAGTC	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	457
SinI	GGWCC	2 cut(s)	127, 441
SmiMI	CAYNNNNRTG	1 cut(s)	852
Sse9I	AATT	4 cut(s)	182, 233, 631, 670
SsiI	CCGC	2 cut(s)	124, 803
SspMI	CTAG	2 cut(s)	683, 705
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	355, 923
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	3 cut(s)	199, 312, 769
TasI	AATT	4 cut(s)	182, 233, 631, 670
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	225, 400
Tru1I	TTAA	3 cut(s)	171, 645, 985
Tru9I	TTAA	3 cut(s)	171, 645, 985
TscAI	CASTG	2 cut(s)	352, 523
TseFI	GTSAC	1 cut(s)	878
TseI	GCWGC	5 cut(s)	599, 701, 938, 953, 962
Tsp45I	GTSAC	1 cut(s)	878
TspDTI	ATGAA	6 cut(s)	17, 132, 195, 282, 542, 560
TspRI	CASTG	2 cut(s)	352, 523
VpaK11BI	GGWCC	2 cut(s)	127, 441
XbaI	TCTAGA	1 cut(s)	682
XceI	RCATGY	1 cut(s)	595
XmnI	GAANNNNTTC	2 cut(s)	717, 804
XspI	CTAG	2 cut(s)	683, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.