Rh6CG318800

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001496
Physical Location & Seq
Reverse (-)
50325615 .. 50329381
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG318800.1

Sequence Viewer

Length: 1350 bp
ATGAGTCTAATACTCGAGCCGAAATCAAAAGGCTTAAACTGTATGAGTAGAGGAATAAAGGGAATACAAGTTCATAGTTTTGATGTATTCATTGCTGTTGGTGTTGTAGTGGCATTCAAATCTAGGGAAGATCATCGTAAGCAAATTGAATTGGAAGAAGCCCGTAAGGCTGGGCTCGCACCAGCTGAACTCGATGAGGATGGAAAGGAGATCAATCCTCATATTCCTCAGTATATGTCATCTGCACCTTGGTATCTCAATGCCGAAAGACCTAGCTTGAAACATCAAAGGAAATGGAAATCAGATCCGAATTACACAAAATCGTGGTACGACAGAGGTGCAAAGATAGGCCAGGCTGATAAATATAGGAAGGGTGCATGTCAGAATTGTGGAGCCATGTCACATGATATCAAGTCTTGTATGGAAAGACCCAGGAAAGTGGGAGCAAAGTATACAAACAAGCACATTGCTCCTGATGAGAAGGTAGAGACTTTTGAGCTCGACTATGATGGAAAACGGGACCGCTGGAATGGATATGATGCATCATCCTATGCCCTAGTCATTGAGAGATATGAATCAAGAGATGAAGCACGAAGGAAATTCTTAAAAGAACAACAACTGAAAAAATTGGAGGGAAAAAATAATAACCAAAATGGTGAGGATGGGGTTAGTGAAGAGGATGAAGAGGAGGCTGAGGATGAGGATGATCTGAGGGTGGATGAAGCCAAGGTTGATGAGAGCAAACAAATGGACTTTGCAAAGGTTGAGAAGCGTGTTCGTACAACAGGTGGTGGGAGCACAGGAACTGTCAGGAATTTGCGTATTCGTGAGGATACAGCAAAATATCTTCTAAACCTTGACGTCAACTCTGCACATTATGATCCCAAAACCCGATCCATGCGTGAGGATCCTCTTCCAGATGCTGATCCAAATGAGAAATTTTACGCGGGTGATAACAGATATAGAAATAGTGGTCAAGCTATGGAATTCAAGCAGCTGAATATCCATGCTTGGGAAGCATTTGACAAAGGCCAAGACATTCACATGCAAGCAGCCCCGTCCCAGGCTGAATTACTTTATAAGAACTATAAAGTAATTAAGGAGAATTTGAAGTCGCACACAAAGGACACCATTCTAGAGAAGTATGGCAATGCAGCTAGTGAAGAAGCAATTCCTAGGGAGCTTCTACTGGGACAGAGTGAAAGAGAAGTTGAATATGATCGTGCTGGCAGGATTATCAAAGGACAGGTAAATAATTTGCATCAACTTTTTATTTATGATGCTATATGTGGCCTTTCGTTTTGCAACCTAGTTTTTGTCTGCCTTGTTTTGGAACTCAAGGAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

449

Amino Acids

51.52

Weight (kDa)

6.04

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 167 - 419 3.3e-81 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
AatII GACGTC 1 cut(s) 864
AccI GTMKAC 1 cut(s) 452
AccII CGCG 1 cut(s) 947
AciI CCGC 2 cut(s) 523, 947
AclWI GGATC 6 cut(s) 299, 875, 888, 902, 915, 920
AcsI RAATTY 5 cut(s) 599, 814, 938, 986, 1105
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 2 cut(s) 329, 781
AfiI CCNNNNNNNGG 3 cut(s) 1012, 1063, 1330
AgsI TTSAA 6 cut(s) 118, 149, 280, 991, 1111, 1214
AjnI CCWGG 3 cut(s) 351, 431, 1062
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
AluBI AGCT 7 cut(s) 185, 276, 499, 980, 997, 1157, 1183
AluI AGCT 7 cut(s) 185, 276, 499, 980, 997, 1157, 1183
Alw21I GWGCWC 3 cut(s) 501, 800, 1347
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 6 cut(s) 299, 875, 888, 902, 915, 920
AlwNI CAGNNNCTG 2 cut(s) 806, 923
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 3 cut(s) 349, 1030, 1291
ApeKI GCWGC 3 cut(s) 994, 1052, 1154
ApoI RAATTY 5 cut(s) 599, 814, 938, 986, 1105
Asp700I GAANNNNTTC 1 cut(s) 1170
AspA2I CCTAGG 1 cut(s) 1175
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 2 cut(s) 668, 962
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 520
AvrII CCTAGG 1 cut(s) 1175
BaeI ACNNNNGTAYC 2 cut(s) 236, 269
BamHI GGATCC 1 cut(s) 907
BanII GRGCYC 2 cut(s) 177, 501
Bbv12I GWGCWC 3 cut(s) 501, 800, 1347
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 3 cut(s) 1006, 1064, 1166
BccI CCATC 3 cut(s) 194, 503, 656
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 3 cut(s) 353, 433, 1064
BciVI GTATCC 1 cut(s) 826
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 7 cut(s) 123, 273, 557, 1136, 1158, 1176, 1310
BfuI GTATCC 1 cut(s) 826
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 3 cut(s) 995, 1053, 1155
BlnI CCTAGG 1 cut(s) 1175
BlsI GCNGC 3 cut(s) 996, 1054, 1156
Bme1390I CCNGG 3 cut(s) 353, 433, 1064
Bme18I GGWCC 1 cut(s) 520
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 3 cut(s) 394, 521, 909
BmrFI CCNGG 3 cut(s) 353, 433, 1064
BmrI ACTGGG 1 cut(s) 1199
BmsI GCATC 5 cut(s) 529, 551, 910, 1270, 1270
BmuI ACTGGG 1 cut(s) 1199
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 1322
BsaBI GATNNNNATC 2 cut(s) 574, 924
BsaHI GRCGYC 1 cut(s) 861
BsaJI CCNNGG 5 cut(s) 248, 431, 726, 1062, 1175
Bsc4I CCNNNNNNNGG 3 cut(s) 1012, 1063, 1330
Bse1I ACTGG 1 cut(s) 1194
Bse3DI GCAATG 3 cut(s) 90, 465, 1156
Bse8I GATNNNNATC 2 cut(s) 574, 924
BseBI CCWGG 3 cut(s) 353, 433, 1064
BseDI CCNNGG 5 cut(s) 248, 431, 726, 1062, 1175
BseGI GGATG 7 cut(s) 205, 545, 667, 685, 703, 709, 724
BseJI GATNNNNATC 2 cut(s) 574, 924
BseLI CCNNNNNNNGG 3 cut(s) 1012, 1063, 1330
BseMI GCAATG 3 cut(s) 90, 465, 1156
BseMII CTCAG 3 cut(s) 242, 684, 701
BseNI ACTGG 1 cut(s) 1194
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 3 cut(s) 1006, 1064, 1166
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 2 cut(s) 228, 855
Bsh1236I CGCG 1 cut(s) 947
BshFI GGCC 3 cut(s) 351, 1032, 1293
BsiHKAI GWGCWC 3 cut(s) 501, 800, 1347
BsiHKCI CYCGRG 1 cut(s) 14
BslFI GGGAC 3 cut(s) 533, 1045, 1206
BslI CCNNNNNNNGG 3 cut(s) 1012, 1063, 1330
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 3 cut(s) 533, 1045, 1206
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 3 cut(s) 351, 1032, 1293
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 4 cut(s) 177, 501, 800, 1347
Bsp143I GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
BspACI CCGC 2 cut(s) 523, 947
BspANI GGCC 3 cut(s) 351, 1032, 1293
BspCNI CTCAG 3 cut(s) 241, 685, 702
BspFNI CGCG 1 cut(s) 947
BspLI GGNNCC 3 cut(s) 394, 521, 909
BspPI GGATC 6 cut(s) 299, 875, 888, 902, 915, 920
BsrDI GCAATG 3 cut(s) 90, 465, 1156
BsrI ACTGG 1 cut(s) 1194
BssECI CCNNGG 5 cut(s) 248, 431, 726, 1062, 1175
BssMI GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
BssNAI GTATAC 1 cut(s) 453
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 3 cut(s) 248, 726, 1175
Bst1107I GTATAC 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 353, 433, 1064
Bst4CI ACNGT 2 cut(s) 41, 808
Bst6I CTCTTC 3 cut(s) 669, 678, 918
BstACI GRCGYC 1 cut(s) 861
BstC8I GCNNGC 3 cut(s) 177, 1050, 1228
BstDEI CTNAG 3 cut(s) 228, 693, 710
BstF5I GGATG 7 cut(s) 205, 545, 667, 685, 703, 709, 724
BstFNI CGCG 1 cut(s) 947
BstKTI GATC 9 cut(s) 133, 213, 307, 709, 883, 896, 910, 928, 1222
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
BstMWI GCNNNNNNNGC 3 cut(s) 167, 176, 1016
BstNI CCWGG 3 cut(s) 353, 433, 1064
BstNSI RCATGY 2 cut(s) 381, 1048
BstSCI CCNGG 3 cut(s) 351, 431, 1062
BstUI CGCG 1 cut(s) 947
BstV1I GCAGC 3 cut(s) 1006, 1064, 1166
BstX2I RGATCY 2 cut(s) 304, 907
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 2 cut(s) 304, 907
BstZ17I GTATAC 1 cut(s) 453
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 3 cut(s) 351, 1032, 1293
BtsCI GGATG 7 cut(s) 205, 545, 667, 685, 703, 709, 724
Cac8I GCNNGC 3 cut(s) 177, 1050, 1228
CaiI CAGNNNCTG 2 cut(s) 806, 923
Cfr13I GGNCC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 328, 780
CviAII CATG 6 cut(s) 378, 397, 404, 898, 1007, 1045
CviQI GTAC 2 cut(s) 328, 780
DdeI CTNAG 3 cut(s) 228, 693, 710
DpnI GATC 9 cut(s) 132, 212, 306, 708, 882, 895, 909, 927, 1221
DpnII GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
Eam1104I CTCTTC 3 cut(s) 669, 678, 918
EarI CTCTTC 3 cut(s) 669, 678, 918
Ecl136II GAGCTC 1 cut(s) 499
Eco130I CCWWGG 3 cut(s) 248, 726, 1175
Eco24I GRGCYC 2 cut(s) 177, 501
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 986
EcoRII CCWGG 3 cut(s) 351, 431, 1062
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 3 cut(s) 248, 726, 1175
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 2 cut(s) 177, 501
ErhI CCWWGG 3 cut(s) 248, 726, 1175
FaeI CATG 6 cut(s) 381, 400, 407, 901, 1010, 1048
FaqI GGGAC 3 cut(s) 533, 1045, 1206
FatI CATG 6 cut(s) 377, 396, 403, 897, 1006, 1044
FauI CCCGC 1 cut(s) 940
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 3 cut(s) 995, 1053, 1155
FokI GGATG 7 cut(s) 212, 532, 674, 692, 710, 716, 731
FriOI GRGCYC 2 cut(s) 177, 501
Fsp4HI GCNGC 3 cut(s) 995, 1053, 1155
FspBI CTAG 7 cut(s) 123, 273, 557, 1136, 1158, 1176, 1310
GluI GCNGC 3 cut(s) 995, 1053, 1155
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 3 cut(s) 351, 1032, 1293
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 6 cut(s) 381, 400, 407, 901, 1010, 1048
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 2 cut(s) 4, 575
HphI GGTGA 2 cut(s) 668, 962
Hpy166II GTNNAC 2 cut(s) 453, 865
Hpy188I TCNGA 4 cut(s) 304, 309, 384, 711
Hpy188III TCNNGA 6 cut(s) 473, 579, 811, 827, 917, 1136
Hpy8I GTNNAC 2 cut(s) 453, 865
HpyAV CCTTC 3 cut(s) 364, 475, 588
HpyCH4III ACNGT 2 cut(s) 41, 808
HpyCH4IV ACGT 1 cut(s) 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 176, 1016
HpyF3I CTNAG 3 cut(s) 228, 693, 710
HpySE526I ACGT 1 cut(s) 861
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 6 cut(s) 381, 400, 407, 901, 1010, 1048
Kzo9I GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
LmnI GCTCC 6 cut(s) 392, 443, 475, 795, 1180, 1342
Lsp1109I GCAGC 3 cut(s) 1006, 1064, 1166
LweI GCATC 5 cut(s) 529, 551, 910, 1270, 1270
MaeI CTAG 7 cut(s) 123, 273, 557, 1136, 1158, 1176, 1310
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 1 cut(s) 399
MalI GATC 9 cut(s) 132, 212, 306, 708, 882, 895, 909, 927, 1221
MboI GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
MboII GAAGA 7 cut(s) 140, 167, 686, 695, 839, 905, 1175
MflI RGATCY 2 cut(s) 304, 907
MhlI GDGCHC 4 cut(s) 177, 501, 800, 1347
MlyI GAGTC 1 cut(s) 13
Mph1103I ATGCAT 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 1170
MseI TTAA 3 cut(s) 35, 605, 1098
MslI CAYNNNNRTG 1 cut(s) 1043
MspA1I CMGCKG 3 cut(s) 185, 525, 997
MspR9I CCNGG 3 cut(s) 353, 433, 1064
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 3 cut(s) 353, 433, 1064
MvnI CGCG 1 cut(s) 947
MwoI GCNNNNNNNGC 3 cut(s) 167, 176, 1016
NdeII GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
NlaIII CATG 6 cut(s) 381, 400, 407, 901, 1010, 1048
NlaIV GGNNCC 3 cut(s) 394, 521, 909
NmuCI GTSAC 1 cut(s) 399
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 2 cut(s) 381, 1048
PaeR7I CTCGAG 1 cut(s) 14
PctI GAATGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 1170
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 3 cut(s) 996, 1054, 1156
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PsiI TTATAA 1 cut(s) 1080
Psp124BI GAGCTC 1 cut(s) 501
Psp6I CCWGG 3 cut(s) 351, 431, 1062
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 3 cut(s) 351, 431, 1062
PspN4I GGNNCC 3 cut(s) 394, 521, 909
PspPI GGNCC 1 cut(s) 520
PspXI VCTCGAGB 1 cut(s) 14
PstNI CAGNNNCTG 2 cut(s) 806, 923
PsuI RGATCY 2 cut(s) 304, 907
PvuII CAGCTG 2 cut(s) 185, 997
RsaI GTAC 2 cut(s) 329, 781
RsaNI GTAC 2 cut(s) 328, 780
RseI CAYNNNNRTG 1 cut(s) 1043
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 3 cut(s) 35, 605, 1098
SatI GCNGC 3 cut(s) 995, 1053, 1155
Sau3AI GATC 9 cut(s) 130, 210, 304, 706, 880, 893, 907, 925, 1219
Sau96I GGNCC 1 cut(s) 520
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 353, 433, 1064
SduI GDGCHC 4 cut(s) 177, 501, 800, 1347
SfaNI GCATC 5 cut(s) 529, 551, 910, 1270, 1270
Sfr274I CTCGAG 1 cut(s) 14
SinI GGWCC 1 cut(s) 520
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 1043
SmlI CTYRAG 2 cut(s) 14, 1337
SmoI CTYRAG 2 cut(s) 14, 1337
SsiI CCGC 2 cut(s) 523, 947
SspMI CTAG 7 cut(s) 123, 273, 557, 1136, 1158, 1176, 1310
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 3 cut(s) 351, 431, 1062
StyI CCWWGG 3 cut(s) 248, 726, 1175
TaaI ACNGT 2 cut(s) 41, 808
TaiI ACGT 1 cut(s) 864
TaqI TCGA 3 cut(s) 15, 192, 501
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 3 cut(s) 35, 605, 1098
Tru9I TTAA 3 cut(s) 35, 605, 1098
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 3 cut(s) 994, 1052, 1154
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 6 cut(s) 62, 79, 588, 600, 696, 735
VpaK11BI GGWCC 1 cut(s) 520
XapI RAATTY 5 cut(s) 599, 814, 938, 986, 1105
XbaI TCTAGA 1 cut(s) 1135
XceI RCATGY 2 cut(s) 381, 1048
XhoI CTCGAG 1 cut(s) 14
XmaJI CCTAGG 1 cut(s) 1175
XmiI GTMKAC 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 1170
XspI CTAG 7 cut(s) 123, 273, 557, 1136, 1158, 1176, 1310
ZraI GACGTC 1 cut(s) 862
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.