RchiOBHm_Chr6g0288131

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001496
Physical Location & Seq
Reverse (-)
51361285 .. 51364883
3599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25852

Sequence Viewer

Length: 1623 bp
ATGGCGACTGCTTCAGTGGCATTCAAATCTAGGGAAGATCATCGTAAGCAAATTGAATTGGAAGAAGCCCGTAAGGCTGGGCTCGCACCAGCTGAACTCGATGAGGATGGAAAGGAGATCAATCCTCATATTCCTCAGTATATGTCATCTGCACCTTGGTATCTCAATGCCGAAAGACCTAGCTTGAAACATCAAAGGAAATGGAAATCAGATCCGAATTACACAAAATCGTGGTACGACAGAGGTGCAAAGATAGGCCAGGCTGATAAATATAGGAAGGGTGCATGTCAGAATTGTGGAGCCATGTCACATGATATCAAGTCTTGTATGGAAAGACCCAGGAAAGTGGGAGCAAAGTATACAAACAAGCACATTGCTCCTGATGAGAAGGTAGAGACTTTTGAGCTCGACTATGATGGAAAACGGGACCGCTGGAATGGATATGATGCATCATCCTATGCCCTAGTCATTGAGAGATATGAATCAAGAGATGAAGCACGAAGGAAATTCTTAAAAGAACAACAACTGAAAAAATTGGAGGGAAAAAATAATAACCAAAATGGTGAGGATGGGGTTAGTGAAGAGGATGAAGAGGAGGCTGAGGATGAGGATGATCTGAGGGTGGATGAAGCCAAGGTTGATGAGAGCAAACAAATGGACTTTGCAAAGGTTGAGAAGCGTGTTCGTACAACAGGTGGTGGGAGCACAGGAACTGTCAGGAATTTGCGTATTCGTGAGGATACAGCAAAATATCTTCTAAACCTTGACGTCAACTCTGCACATTATGATCCCAAAACCCGATCCATGCGTGAGGATCCTCTTCCAGATGCTGATCCAAATGAGAAATTTTACGCGGGTGATAACAGATATAGAAATAGTGGTCAAGCTATGGAATTCAAGCAGCTGAATATCCATGCTTGGGAAGCATTTGACAAAGGCCAAGACATTCACATGCAAGCAGCCCCGTCCCAGGCTGAATTACTTTATAAGAACTATAAAGTAATTAAGGAGAATTTGAAGTCGCACACAAAGGACACCATTCTAGAGAAGTATGGCAATGCAGCTAGTGAAGAAGCAATTCCTAGGGAGCTTCTACTGGGACAGAGTGAAAGAGAAGTTGAATATGATCGTGCTGGCAGGATTATCAAAGGACAGGAAACCACACTTCCCAGAAGCAAGTATGAAGAAGATGTCTATGTCAACAACCACACCTGCGTATGGGGTTCATGGTGGAAGGATCATCAATGGGGATACAGGTGTTGTCAGCAGTTAACTCGAAACAGCTACTGCACAGGTGCTGCTGGAATAGAGGCTGCTGAGGCTGCATCAGATCTGATGAAGGCCAATATTGCTCGTAAAGAGGCTGCTGGAGAAATGCCTCCTCCTGCAGAGGAGAAAAGACCTGCTACTTGGGGAACTGACATCCCAGAAGATTTGGTTTTAGATGAGAAACTACTTGCTGAAGCTCTTAAAAAAGAGGATGCAAGAAGGAAAGAAGAGAGAGATGAGAGAAAACGCAAATACAATGTCAGATGGAACGATGAGGTTACTGCAGAGGATATGGAGGCTTACAGGATGAAGAAAGTTCACCATGATGATCCAATGAAGGAGTTTCTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

540

Amino Acids

62.45

Weight (kDa)

5.68

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 136 - 409 2.2e-95 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
AarI CACCTGC 1 cut(s) 1220
AatII GACGTC 1 cut(s) 771
Acc36I ACCTGC 2 cut(s) 1220, 1411
AccI GTMKAC 1 cut(s) 359
AccII CGCG 1 cut(s) 854
AciI CCGC 2 cut(s) 430, 854
AclWI GGATC 8 cut(s) 206, 782, 795, 809, 822, 827, 1245, 1592
AcsI RAATTY 5 cut(s) 506, 721, 845, 893, 1012
AcuI CTGAAG 1 cut(s) 1482
AcyI GRCGYC 1 cut(s) 768
AfaI GTAC 2 cut(s) 236, 688
AfiI CCNNNNNNNGG 3 cut(s) 919, 970, 1218
AgsI TTSAA 6 cut(s) 25, 56, 187, 898, 1018, 1121
AjnI CCWGG 3 cut(s) 258, 338, 969
AluBI AGCT 9 cut(s) 92, 183, 406, 887, 904, 1064, 1090, 1284, 1466
AluI AGCT 9 cut(s) 92, 183, 406, 887, 904, 1064, 1090, 1284, 1466
Alw21I GWGCWC 2 cut(s) 408, 707
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 8 cut(s) 206, 782, 795, 809, 822, 827, 1245, 1592
AlwNI CAGNNNCTG 4 cut(s) 713, 830, 1287, 1298
AoxI GGCC 3 cut(s) 256, 937, 1341
ApeKI GCWGC 7 cut(s) 901, 959, 1061, 1298, 1313, 1322, 1364
ApoI RAATTY 5 cut(s) 506, 721, 845, 893, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 1512, 1544
Asp700I GAANNNNTTC 1 cut(s) 1077
AspA2I CCTAGG 1 cut(s) 1082
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 575, 869, 1580
AvaII GGWCC 1 cut(s) 427
AvrII CCTAGG 1 cut(s) 1082
BaeI ACNNNNGTAYC 4 cut(s) 143, 176, 1243, 1276
BamHI GGATCC 1 cut(s) 814
BanII GRGCYC 2 cut(s) 84, 408
Bbv12I GWGCWC 2 cut(s) 408, 707
BbvCI CCTCAGC 2 cut(s) 600, 1317
BbvI GCAGC 7 cut(s) 913, 971, 1073, 1285, 1300, 1309, 1351
BccI CCATC 4 cut(s) 101, 410, 563, 1527
BcgI CGANNNNNNTGC 4 cut(s) 227, 261, 1256, 1290
BciT130I CCWGG 3 cut(s) 260, 340, 971
BciVI GTATCC 2 cut(s) 733, 1244
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 6 cut(s) 30, 180, 464, 1043, 1065, 1083
BfmI CTRYAG 2 cut(s) 1386, 1551
BfuAI ACCTGC 2 cut(s) 1220, 1411
BfuI GTATCC 2 cut(s) 733, 1244
BglI GCCNNNNNGGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 1330
BisI GCNGC 7 cut(s) 902, 960, 1062, 1299, 1314, 1323, 1365
BlnI CCTAGG 1 cut(s) 1082
BlsI GCNGC 7 cut(s) 903, 961, 1063, 1300, 1315, 1324, 1366
Bme1390I CCNGG 3 cut(s) 260, 340, 971
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 301, 428, 816
BmrFI CCNGG 3 cut(s) 260, 340, 971
BmrI ACTGGG 1 cut(s) 1106
BmsI GCATC 5 cut(s) 436, 458, 817, 1334, 1471
BmuI ACTGGG 1 cut(s) 1106
BpmI CTGGAG 1 cut(s) 1389
Bpu10I CCTNAGC 2 cut(s) 600, 1317
BsaBI GATNNNNATC 2 cut(s) 481, 831
BsaHI GRCGYC 1 cut(s) 768
BsaJI CCNNGG 5 cut(s) 155, 338, 633, 969, 1082
Bsc4I CCNNNNNNNGG 3 cut(s) 919, 970, 1218
Bse1I ACTGG 1 cut(s) 1101
Bse3DI GCAATG 2 cut(s) 372, 1063
Bse8I GATNNNNATC 2 cut(s) 481, 831
BseBI CCWGG 3 cut(s) 260, 340, 971
BseDI CCNNGG 5 cut(s) 155, 338, 633, 969, 1082
BseJI GATNNNNATC 2 cut(s) 481, 831
BseLI CCNNNNNNNGG 3 cut(s) 919, 970, 1218
BseMI GCAATG 2 cut(s) 372, 1063
BseMII CTCAG 4 cut(s) 149, 591, 608, 1308
BseNI ACTGG 1 cut(s) 1101
BseRI GAGGAG 3 cut(s) 608, 1371, 1406
BseXI GCAGC 7 cut(s) 913, 971, 1073, 1285, 1300, 1309, 1351
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 3 cut(s) 135, 762, 1273
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 3 cut(s) 258, 939, 1343
BsiHKAI GWGCWC 2 cut(s) 408, 707
BslFI GGGAC 3 cut(s) 440, 952, 1113
BslI CCNNNNNNNGG 3 cut(s) 919, 970, 1218
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 3 cut(s) 440, 952, 1113
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 3 cut(s) 258, 939, 1343
Bsp1286I GDGCHC 3 cut(s) 84, 408, 707
BspACI CCGC 2 cut(s) 430, 854
BspANI GGCC 3 cut(s) 258, 939, 1343
BspCNI CTCAG 4 cut(s) 148, 592, 609, 1309
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 3 cut(s) 301, 428, 816
BspMAI CTGCAG 2 cut(s) 1390, 1555
BspMI ACCTGC 2 cut(s) 1220, 1411
BspPI GGATC 8 cut(s) 206, 782, 795, 809, 822, 827, 1245, 1592
BsrDI GCAATG 2 cut(s) 372, 1063
BsrI ACTGG 1 cut(s) 1101
BssECI CCNNGG 5 cut(s) 155, 338, 633, 969, 1082
BssNAI GTATAC 1 cut(s) 360
BssNI GRCGYC 1 cut(s) 768
BssT1I CCWWGG 3 cut(s) 155, 633, 1082
Bst1107I GTATAC 1 cut(s) 360
Bst2UI CCWGG 3 cut(s) 260, 340, 971
Bst4CI ACNGT 1 cut(s) 715
Bst6I CTCTTC 4 cut(s) 576, 585, 825, 1491
BstACI GRCGYC 1 cut(s) 768
BstC8I GCNNGC 3 cut(s) 84, 957, 1135
BstDEI CTNAG 4 cut(s) 135, 600, 617, 1317
BstFNI CGCG 1 cut(s) 854
BstMAI GTCTC 1 cut(s) 389
BstMWI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 923, 1319, 1322, 1349
BstNI CCWGG 3 cut(s) 260, 340, 971
BstNSI RCATGY 2 cut(s) 288, 955
BstSCI CCNGG 3 cut(s) 258, 338, 969
BstSFI CTRYAG 2 cut(s) 1386, 1551
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 7 cut(s) 913, 971, 1073, 1285, 1300, 1309, 1351
BstX2I RGATCY 3 cut(s) 211, 814, 1330
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 3 cut(s) 211, 814, 1330
BstZ17I GTATAC 1 cut(s) 360
BsuI GTATCC 2 cut(s) 733, 1244
BsuRI GGCC 3 cut(s) 258, 939, 1343
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 2 cut(s) 1220, 1411
Cac8I GCNNGC 3 cut(s) 84, 957, 1135
CaiI CAGNNNCTG 4 cut(s) 713, 830, 1287, 1298
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 2 cut(s) 235, 687
CviAII CATG 8 cut(s) 285, 304, 311, 805, 914, 952, 1227, 1592
CviQI GTAC 2 cut(s) 235, 687
DdeI CTNAG 4 cut(s) 135, 600, 617, 1317
Eam1104I CTCTTC 4 cut(s) 576, 585, 825, 1491
EarI CTCTTC 4 cut(s) 576, 585, 825, 1491
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 3 cut(s) 155, 633, 1082
Eco24I GRGCYC 2 cut(s) 84, 408
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 1482
EcoICRI GAGCTC 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 893
EcoRII CCWGG 3 cut(s) 258, 338, 969
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 3 cut(s) 155, 633, 1082
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 2 cut(s) 84, 408
ErhI CCWWGG 3 cut(s) 155, 633, 1082
FaeI CATG 8 cut(s) 288, 307, 314, 808, 917, 955, 1230, 1595
FaqI GGGAC 3 cut(s) 440, 952, 1113
FatI CATG 8 cut(s) 284, 303, 310, 804, 913, 951, 1226, 1591
FauI CCCGC 1 cut(s) 847
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 7 cut(s) 902, 960, 1062, 1299, 1314, 1323, 1365
FriOI GRGCYC 2 cut(s) 84, 408
Fsp4HI GCNGC 7 cut(s) 902, 960, 1062, 1299, 1314, 1323, 1365
FspBI CTAG 6 cut(s) 30, 180, 464, 1043, 1065, 1083
GluI GCNGC 7 cut(s) 902, 960, 1062, 1299, 1314, 1323, 1365
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 1389
HaeIII GGCC 3 cut(s) 258, 939, 1343
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 8 cut(s) 288, 307, 314, 808, 917, 955, 1230, 1595
HincII GTYRAC 3 cut(s) 772, 1201, 1272
HindII GTYRAC 3 cut(s) 772, 1201, 1272
HinfI GANTC 1 cut(s) 482
HpaI GTTAAC 1 cut(s) 1272
HphI GGTGA 3 cut(s) 575, 869, 1580
Hpy166II GTNNAC 5 cut(s) 360, 772, 1201, 1272, 1588
Hpy188I TCNGA 7 cut(s) 211, 216, 291, 618, 1330, 1335, 1532
Hpy188III TCNNGA 6 cut(s) 380, 486, 718, 734, 824, 1043
Hpy8I GTNNAC 5 cut(s) 360, 772, 1201, 1272, 1588
HpyAV CCTTC 7 cut(s) 271, 382, 495, 1228, 1333, 1482, 1600
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4IV ACGT 1 cut(s) 768
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 923, 1319, 1322, 1349
HpyF3I CTNAG 4 cut(s) 135, 600, 617, 1317
HpySE526I ACGT 1 cut(s) 768
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 8 cut(s) 288, 307, 314, 808, 917, 955, 1230, 1595
KspAI GTTAAC 1 cut(s) 1272
LmnI GCTCC 5 cut(s) 299, 350, 382, 702, 1087
Lsp1109I GCAGC 7 cut(s) 913, 971, 1073, 1285, 1300, 1309, 1351
LweI GCATC 5 cut(s) 436, 458, 817, 1334, 1471
MaeI CTAG 6 cut(s) 30, 180, 464, 1043, 1065, 1083
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 2 cut(s) 306, 1546
MflI RGATCY 3 cut(s) 211, 814, 1330
MhlI GDGCHC 3 cut(s) 84, 408, 707
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 1077
MseI TTAA 4 cut(s) 512, 1005, 1271, 1470
MslI CAYNNNNRTG 2 cut(s) 950, 1593
MspA1I CMGCKG 3 cut(s) 92, 432, 904
MspR9I CCNGG 3 cut(s) 260, 340, 971
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 3 cut(s) 260, 340, 971
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 923, 1319, 1322, 1349
NlaIII CATG 8 cut(s) 288, 307, 314, 808, 917, 955, 1230, 1595
NlaIV GGNNCC 3 cut(s) 301, 428, 816
NmuCI GTSAC 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 2 cut(s) 288, 955
PaqCI CACCTGC 1 cut(s) 1220
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 1 cut(s) 482
PkrI GCNGC 7 cut(s) 903, 961, 1063, 1300, 1315, 1324, 1366
PsiI TTATAA 1 cut(s) 987
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 258, 338, 969
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 3 cut(s) 258, 338, 969
PspN4I GGNNCC 3 cut(s) 301, 428, 816
PspPI GGNCC 1 cut(s) 427
PstI CTGCAG 2 cut(s) 1390, 1555
PstNI CAGNNNCTG 4 cut(s) 713, 830, 1287, 1298
PsuI RGATCY 3 cut(s) 211, 814, 1330
PvuII CAGCTG 2 cut(s) 92, 904
RsaI GTAC 2 cut(s) 236, 688
RsaNI GTAC 2 cut(s) 235, 687
RseI CAYNNNNRTG 2 cut(s) 950, 1593
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 4 cut(s) 512, 1005, 1271, 1470
SatI GCNGC 7 cut(s) 902, 960, 1062, 1299, 1314, 1323, 1365
Sau96I GGNCC 1 cut(s) 427
ScrFI CCNGG 3 cut(s) 260, 340, 971
SduI GDGCHC 3 cut(s) 84, 408, 707
SfaNI GCATC 5 cut(s) 436, 458, 817, 1334, 1471
SfcI CTRYAG 2 cut(s) 1386, 1551
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 2 cut(s) 950, 1593
SsiI CCGC 2 cut(s) 430, 854
SspI AATATT 1 cut(s) 1348
SspMI CTAG 6 cut(s) 30, 180, 464, 1043, 1065, 1083
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 3 cut(s) 258, 338, 969
StyI CCWWGG 3 cut(s) 155, 633, 1082
TaaI ACNGT 1 cut(s) 715
TaiI ACGT 1 cut(s) 771
TaqI TCGA 3 cut(s) 99, 408, 1276
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 4 cut(s) 512, 1005, 1271, 1470
Tru9I TTAA 4 cut(s) 512, 1005, 1271, 1470
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 7 cut(s) 901, 959, 1061, 1298, 1313, 1322, 1364
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 9 cut(s) 495, 507, 603, 642, 1197, 1215, 1352, 1592, 1619
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 5 cut(s) 506, 721, 845, 893, 1012
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 2 cut(s) 288, 955
XmaJI CCTAGG 1 cut(s) 1082
XmiI GTMKAC 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 6 cut(s) 30, 180, 464, 1043, 1065, 1083
ZraI GACGTC 1 cut(s) 769
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.