Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001496

Physical Location & Seq

Genomic Coordinates Reverse (-)

16889461 .. 16890803

Gene Structure 1343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATCAATCTTCACATACCTAAGTATTTGACAATTCCTCCATTATATGCCAAGTCTGAAAAACCGAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAACATCATATTATGACCGAGGTGCAAAGACTTATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCAAAACTGTGGTGCAATGACGCATGATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGCAAAATACACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTATGATGGCAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGATCGTCATGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACTAATTGCGAAACTAGAGGAGAAGAACATTGATGGAGAGGAAGAAGACTTAAGGGTTGATGAAGCCAAGATTGATGAGAGCATGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTTCGAACAACTGATGGTGGAAGCAAAGGAACTGTAAGGAATTTGCGTATCAGAGAAGATCCTGCAAAATACTTGTTGAACCTTGATGTTAACTCAGCTTATTATGATCCTAAATCTCGATCCATGCGTGAAGATCCGCTCCCATATACAGATCCAAATGAGAAATTTTGTTTGAGAGATAATCAATATAGAAACAGTGGTCAAGCTATAGAGTTCAAACAGCAAAACATGTATTCATGTGAAGCGTTTGACAAAGGACAGGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGGTTAAGATTGCAAAGGAAAAACTGAATTCTCAGAGAAAGGACGCAATCATTGCAAAGTATGGGGATGCAGCTGCAAAAGATGACATTCCGATGGAGCTTTTGCTTGGACAAAGTAAGTTGATAAAGACTTCACAAGCCAACGGAATCAAACTCGTCCCTAATGTTTTTGTCAATTTGTGCTTCCTTGTTTTTGTCTTCATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

385

Amino Acids

44.16

Weight (kDa)

8.94

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Slu7	PF11708	137 - 358	1.7e-63	Pre-mRNA splicing Prp18-interacting factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65660 AT3G45950 AT4G37120
fragaria_vesca	FvH4_2g21480 FvH4_4g03640 FvH4_5g13320
malus_domestica	MD05G1197300.v1.1 MD10G1184000.v1.1 MD16G1219100.v1.1
prunus_persica	Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.8G223800_v2.0.a1
pyrus_communis	pycom05g18440 pycom10g15930 pycom16g18260
rosa_chinensis	RchiOBHm_Chr4g0393021 RchiOBHm_Chr6g0288131 RchiOBHm_Chr7g0183821
rosa_laevigata	RLG00000005020 RLG00000009774
rosa_multiflora	Rmu_sc0003610.1_g000043 Rmu_sc0010766.1_g000006 Rmu_sc0034700.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270180 Rroxscaffold_5G00338120 Rroxscaffold_7G00180470
rosa_rugosa	Rorug04G0002700 Rorug04G0002800 Rorug06G0194300 Rorug06G0460700 Rorug06G0460800
rosa_samantha	Rh4AG045400 Rh4BG041400 Rh4CG049000 Rh4DG043300 Rh6AG304700 Rh6BG310700 Rh6CG318800 Rh6DG303700 Rh7AG061400 Rh7BG061500 Rh7CG063100 Rh7DG061500
rosa_wichuraiana	Rw4G003580 Rw6G026360 Rw7G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	945
AarI	CACCTGC	1 cut(s)	601
Acc36I	ACCTGC	1 cut(s)	601
AccBSI	CCGCTC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	776, 917
AclWI	GGATC	6 cut(s)	440, 692, 740, 753, 767, 785
AcsI	RAATTY	4 cut(s)	404, 679, 803, 976
AfaI	GTAC	1 cut(s)	509
AflII	CTTAAG	1 cut(s)	574
AflIII	ACRYGT	3 cut(s)	323, 637, 867
AgsI	TTSAA	4 cut(s)	187, 404, 718, 856
AluBI	AGCT	7 cut(s)	68, 183, 737, 845, 932, 1022, 1048
AluI	AGCT	7 cut(s)	68, 183, 737, 845, 932, 1022, 1048
AlwI	GGATC	6 cut(s)	440, 692, 740, 753, 767, 785
ApeKI	GCWGC	2 cut(s)	1019, 1022
ApoI	RAATTY	4 cut(s)	404, 679, 803, 976
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	2 cut(s)	576, 1138
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	1009, 1031
BccI	CCATC	6 cut(s)	410, 426, 551, 647, 931, 1036
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	2 cut(s)	30, 539
BfmI	CTRYAG	1 cut(s)	846
BfrI	CTTAAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	601
BisI	GCNGC	3 cut(s)	918, 1020, 1023
BlsI	GCNGC	3 cut(s)	919, 1021, 1024
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	428, 921
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	199, 1006
BpiI	GAAGAC	2 cut(s)	576, 1138
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	912
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bse3DI	GCAATG	3 cut(s)	309, 372, 999
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	1021
BseMI	GCAATG	3 cut(s)	309, 372, 999
BseMII	CTCAG	4 cut(s)	84, 747, 924, 995
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	1009, 1031
BsiSI	CCGG	2 cut(s)	78, 89
BslFI	GGGAC	2 cut(s)	440, 1091
BsmFI	GGGAC	2 cut(s)	440, 1091
BsmI	GAATGC	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	643
Bsp143I	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
BspACI	CCGC	2 cut(s)	776, 917
BspCNI	CTCAG	4 cut(s)	85, 746, 925, 994
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	428, 921
BspMI	ACCTGC	1 cut(s)	601
BspPI	GGATC	6 cut(s)	440, 692, 740, 753, 767, 785
BspT104I	TTCGAA	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	778
BsrDI	GCAATG	3 cut(s)	309, 372, 999
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
BssSI	CACGAG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	296, 673, 836
BstAFI	CTTAAG	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstBI	TTCGAA	1 cut(s)	643
BstC8I	GCNNGC	3 cut(s)	84, 608, 915
BstDEI	CTNAG	5 cut(s)	93, 135, 733, 933, 981
BstF5I	GGATG	1 cut(s)	1021
BstKTI	GATC	8 cut(s)	40, 448, 475, 700, 748, 761, 775, 793
BstMBI	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 74, 83, 1001
BstNSI	RCATGY	3 cut(s)	327, 610, 871
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	846
BstV1I	GCAGC	2 cut(s)	1009, 1031
BstV2I	GAAGAC	2 cut(s)	576, 1138
BstX2I	RGATCY	3 cut(s)	697, 772, 790
BstYI	RGATCY	3 cut(s)	697, 772, 790
BtsCI	GGATG	1 cut(s)	1021
BtsIMutI	CAGTG	1 cut(s)	841
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	84, 608, 915
CciI	TCATGA	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	2 cut(s)	316, 1001
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	8 cut(s)	311, 324, 464, 479, 607, 763, 868, 876
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	5 cut(s)	93, 135, 733, 933, 981
DpnI	GATC	8 cut(s)	39, 447, 474, 699, 747, 760, 774, 792
DpnII	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
Eco47I	GGWCC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	976
FaeI	CATG	8 cut(s)	314, 327, 467, 482, 610, 766, 871, 879
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	2 cut(s)	440, 1091
FatI	CATG	8 cut(s)	310, 323, 463, 478, 606, 762, 867, 875
FauNDI	CATATG	1 cut(s)	909
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	918, 1020, 1023
FokI	GGATG	1 cut(s)	1028
Fsp4HI	GCNGC	3 cut(s)	918, 1020, 1023
FspBI	CTAG	2 cut(s)	30, 539
GluI	GCNGC	3 cut(s)	918, 1020, 1023
HapII	CCGG	2 cut(s)	78, 89
HgaI	GACGC	2 cut(s)	316, 1001
Hin1II	CATG	8 cut(s)	314, 327, 467, 482, 610, 766, 871, 879
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HinfI	GANTC	2 cut(s)	397, 1095
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	2 cut(s)	78, 89
Hpy166II	GTNNAC	2 cut(s)	100, 730
Hpy188I	TCNGA	5 cut(s)	172, 276, 692, 984, 1041
Hpy188III	TCNNGA	5 cut(s)	394, 401, 479, 756, 1155
Hpy8I	GTNNAC	2 cut(s)	100, 730
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	3 cut(s)	296, 673, 836
HpyCH4IV	ACGT	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 74, 83, 1001
HpyF3I	CTNAG	5 cut(s)	93, 135, 733, 933, 981
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	8 cut(s)	314, 327, 467, 482, 610, 766, 871, 879
KspAI	GTTAAC	1 cut(s)	730
Kzo9I	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
LmnI	GCTCC	5 cut(s)	91, 281, 783, 925, 1045
LpnPI	CCDG	7 cut(s)	91, 102, 393, 524, 596, 714, 884
Lsp1109I	GCAGC	2 cut(s)	1009, 1031
LweI	GCATC	2 cut(s)	199, 1006
MaeI	CTAG	2 cut(s)	30, 539
MaeII	ACGT	1 cut(s)	637
MalI	GATC	8 cut(s)	39, 447, 474, 699, 747, 760, 774, 792
MbiI	CCGCTC	1 cut(s)	778
MboI	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
MboII	GAAGA	7 cut(s)	116, 559, 578, 581, 707, 782, 1138
MflI	RGATCY	3 cut(s)	697, 772, 790
MluCI	AATT	9 cut(s)	56, 147, 199, 404, 528, 679, 803, 976, 1123
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	9 cut(s)	55, 88, 97, 162, 236, 348, 535, 556, 942
MseI	TTAA	5 cut(s)	24, 575, 630, 729, 954
MslI	CAYNNNNRTG	3 cut(s)	611, 908, 1040
MspA1I	CMGCKG	1 cut(s)	1022
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	2 cut(s)	78, 89
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	499
MwoI	GCNNNNNNNGC	4 cut(s)	17, 74, 83, 1001
NciI	CCSGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
NlaIII	CATG	8 cut(s)	314, 327, 467, 482, 610, 766, 871, 879
NlaIV	GGNNCC	2 cut(s)	428, 921
NspI	RCATGY	3 cut(s)	327, 610, 871
NspV	TTCGAA	1 cut(s)	643
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	601
PciI	ACATGT	2 cut(s)	323, 867
PcsI	WCGNNNNNNNCGW	1 cut(s)	763
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	1095
PkrI	GCNGC	3 cut(s)	919, 1021, 1024
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PscI	ACATGT	2 cut(s)	323, 867
PsiI	TTATAA	1 cut(s)	945
PspN4I	GGNNCC	2 cut(s)	428, 921
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	3 cut(s)	697, 772, 790
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	3 cut(s)	611, 908, 1040
SaqAI	TTAA	5 cut(s)	24, 575, 630, 729, 954
SatI	GCNGC	3 cut(s)	918, 1020, 1023
Sau3AI	GATC	8 cut(s)	37, 445, 472, 697, 745, 758, 772, 790
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	79
SfaNI	GCATC	2 cut(s)	199, 1006
SfcI	CTRYAG	1 cut(s)	846
SfuI	TTCGAA	1 cut(s)	643
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	611, 908, 1040
SmlI	CTYRAG	2 cut(s)	574, 927
SmoI	CTYRAG	2 cut(s)	574, 927
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	9 cut(s)	56, 147, 199, 404, 528, 679, 803, 976, 1123
SsiI	CCGC	2 cut(s)	776, 917
SspMI	CTAG	2 cut(s)	30, 539
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	296, 673, 836
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	3 cut(s)	393, 643, 757
TaqII	GACCGA	2 cut(s)	255, 444
TasI	AATT	9 cut(s)	56, 147, 199, 404, 528, 679, 803, 976, 1123
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	1 cut(s)	1095
Tru1I	TTAA	5 cut(s)	24, 575, 630, 729, 954
Tru9I	TTAA	5 cut(s)	24, 575, 630, 729, 954
TscAI	CASTG	1 cut(s)	841
TseI	GCWGC	2 cut(s)	1019, 1022
TspDTI	ATGAA	4 cut(s)	495, 600, 864, 1138
TspGWI	ACGGA	1 cut(s)	1107
TspRI	CASTG	1 cut(s)	841
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	4 cut(s)	404, 679, 803, 976
XceI	RCATGY	3 cut(s)	327, 610, 871
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	2 cut(s)	30, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.