Rmu_sc0010766.1_g000006

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010766.1
OG0001496
Physical Location & Seq
Reverse (-)
14548 .. 19197
4650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010766.1_g000006.1.cds

Sequence Viewer

Length: 1833 bp
atggaattggatttcaggtttggagtggacgcgacgttatttaggactcgaagtactccagtgtggtggagggtgcactcctctatgctgccctttcagttgctcacgacaactgccacttctactaagccgttgtcaaccaggcagctagggatttcatcttctactcctacacaattcttcttgcatcagcttcaccgcggcccgaaaatggcgactgcttcagtggcattcaaatctagggaagatcatcgtaagcaaattgaattggaagaagcccgtaaggctgggctcgcaccagctgaactcgatgaggatggaaaggagatcaatcctcatattcctcagtatatgtcatctgcaccttggtatctcaatgccgaaagacctagcttgaaacatcaaaggaaatggaaatcagatccaaattacacaaaatcgtggtacgacagaggtgcaaagataggccaggctgataaatataggaagggtgcatgtcagaattgtggggccatgtcacatgatatcaagtcttgtatggaaagacccaggaaagtgggagcaaagtatacgaacaagcacattgctcctgatgagaaggtagagacttttgagctcgactatgatggaaaacgggaccgctggaatggatatgatgcatcatcctatgccctagtcattgagagatatgaatcaagagatgaagcacgaaggaaattcttaaaagaacaacaactgaaaaaattggagggaaaaaataataaccaaaatggtgaggatggggttagtgaagaggatgaagaggaggctgaggatgaggatgatctgagggtggatgaagccaaggttgatgagagcaaacaaatggactttgcaaaggttgagaagcgtgttcgtacaacaggtggtgggagcacaggaactgtcaggaatttgcgtattcgtgaggatacggcaaaatatcttctaaaccttgacgtcaactctgcacattatgatcccaaaacccgatccatgcgtgaggatcctcttccagatgctgatccaaatgagaaattttacgcgggtgataacagatatagaaatagtggtcaagctatggaattcaagcagttgaatatccatgcttgggaagcatttgacaaaggccaagacattcacatgcaagcagccccgtcccaggctgaattactttataagaactataaagtaattaaggagaatttgaagtcgcacacaaaggacaccattctagagaagtatggcaatgcagctagtgaagaagcaattcctagggagcttctactgggacagagtgaaagagaagttgaatatgatcgtgctgggaggattatcaaaggacaggaaaccacacttcccagaagcaagtatgaagaagatgtctatgtcaacaaccacacctgtgtatggggttcatggtggaaggatcatcaatggggatacaggtgttgtcagcagttaactcgaaacagctactgcacaggtgctgctggaatagaggctgctgaggctgcatcagatctgatgaaggccaacattgctcgtaaagaggctgctggagaaatgcctccacctgcggaggagaaaagacctgctacttggggaactgacatcccagaagatttggttttagatgagaaactacttgctgaagctcttaaaaaagaggatgcaagaaggaaagaagagagagatgagagaaaacgcaaatacaatgtcagatggaatgatgaggttactgcagaggatatggaggcttacaggatgaagaaagttcaccatgatgatccaatgaaggagtttctcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

610

Amino Acids

70.48

Weight (kDa)

6.14

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1197
AarI CACCTGC 1 cut(s) 1603
AatII GACGTC 1 cut(s) 981
Acc36I ACCTGC 2 cut(s) 1603, 1621
AccI GTMKAC 1 cut(s) 569
AccII CGCG 3 cut(s) 32, 201, 1064
AciI CCGC 5 cut(s) 199, 201, 640, 1064, 1598
AclWI GGATC 8 cut(s) 416, 992, 1005, 1019, 1032, 1037, 1455, 1802
AcsI RAATTY 5 cut(s) 716, 931, 1055, 1103, 1222
AcuI CTGAAG 2 cut(s) 207, 1692
AcyI GRCGYC 1 cut(s) 978
AfaI GTAC 3 cut(s) 55, 446, 898
AfiI CCNNNNNNNGG 4 cut(s) 211, 1129, 1180, 1428
AgsI TTSAA 7 cut(s) 235, 266, 397, 1108, 1117, 1228, 1331
AjnI CCWGG 4 cut(s) 140, 468, 548, 1179
AleI CACNNNNGTG 1 cut(s) 1422
Alw21I GWGCWC 3 cut(s) 78, 618, 917
Alw26I GTCTC 1 cut(s) 599
Alw44I GTGCAC 1 cut(s) 74
AlwI GGATC 8 cut(s) 416, 992, 1005, 1019, 1032, 1037, 1455, 1802
AlwNI CAGNNNCTG 4 cut(s) 923, 1040, 1497, 1508
AoxI GGCC 5 cut(s) 202, 466, 510, 1147, 1551
ApaLI GTGCAC 1 cut(s) 74
ApeKI GCWGC 8 cut(s) 88, 145, 1169, 1271, 1508, 1523, 1532, 1574
ApoI RAATTY 5 cut(s) 716, 931, 1055, 1103, 1222
ArsI GACNNNNNNTTYG 2 cut(s) 1722, 1754
Asp700I GAANNNNTTC 1 cut(s) 1287
AspA2I CCTAGG 1 cut(s) 1292
AspS9I GGNCC 3 cut(s) 203, 510, 637
AsuHPI GGTGA 4 cut(s) 188, 785, 1079, 1790
AvaII GGWCC 1 cut(s) 637
AvrII CCTAGG 1 cut(s) 1292
BaeGI GKGCMC 1 cut(s) 78
BaeI ACNNNNGTAYC 4 cut(s) 353, 386, 1453, 1486
BamHI GGATCC 1 cut(s) 1024
BanII GRGCYC 2 cut(s) 294, 618
Bbv12I GWGCWC 3 cut(s) 78, 618, 917
BbvCI CCTCAGC 2 cut(s) 810, 1527
BbvI GCAGC 8 cut(s) 75, 157, 1181, 1283, 1495, 1510, 1519, 1561
BccI CCATC 4 cut(s) 311, 620, 773, 1737
BceAI ACGGC 2 cut(s) 115, 969
BcgI CGANNNNNNTGC 4 cut(s) 437, 471, 1466, 1500
BciT130I CCWGG 4 cut(s) 142, 470, 550, 1181
BciVI GTATCC 2 cut(s) 943, 1454
BcoDI GTCTC 1 cut(s) 599
BfaI CTAG 7 cut(s) 149, 240, 390, 674, 1253, 1275, 1293
BfmI CTRYAG 1 cut(s) 1761
BfuAI ACCTGC 2 cut(s) 1603, 1621
BfuI GTATCC 2 cut(s) 943, 1454
BglI GCCNNNNNGGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 1540
BisI GCNGC 9 cut(s) 89, 146, 202, 1170, 1272, 1509, 1524, 1533, 1575
BlnI CCTAGG 1 cut(s) 1292
BlsI GCNGC 9 cut(s) 90, 147, 203, 1171, 1273, 1510, 1525, 1534, 1576
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 4 cut(s) 142, 470, 550, 1181
Bme18I GGWCC 1 cut(s) 637
BmgT120I GGNCC 3 cut(s) 203, 510, 637
BmiI GGNNCC 3 cut(s) 511, 638, 1026
BmrFI CCNGG 4 cut(s) 142, 470, 550, 1181
BmrI ACTGGG 1 cut(s) 1316
BmsI GCATC 6 cut(s) 196, 646, 668, 1027, 1544, 1681
BmuI ACTGGG 1 cut(s) 1316
BpmI CTGGAG 2 cut(s) 42, 1599
Bpu10I CCTNAGC 2 cut(s) 810, 1527
BsaBI GATNNNNATC 2 cut(s) 691, 1041
BsaHI GRCGYC 1 cut(s) 978
BsaJI CCNNGG 6 cut(s) 199, 365, 548, 843, 1179, 1292
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 1129, 1180, 1428
Bse1I ACTGG 2 cut(s) 59, 1311
Bse3DI GCAATG 3 cut(s) 582, 1273, 1557
Bse8I GATNNNNATC 2 cut(s) 691, 1041
BseBI CCWGG 4 cut(s) 142, 470, 550, 1181
BseDI CCNNGG 6 cut(s) 199, 365, 548, 843, 1179, 1292
BseJI GATNNNNATC 2 cut(s) 691, 1041
BseLI CCNNNNNNNGG 4 cut(s) 211, 1129, 1180, 1428
BseMI GCAATG 3 cut(s) 582, 1273, 1557
BseMII CTCAG 4 cut(s) 359, 801, 818, 1518
BseNI ACTGG 2 cut(s) 59, 1311
BseRI GAGGAG 3 cut(s) 70, 818, 1616
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 8 cut(s) 75, 157, 1181, 1283, 1495, 1510, 1519, 1561
BseYI CCCAGC 2 cut(s) 287, 1343
BsgI GTGCAG 3 cut(s) 345, 972, 1483
Bsh1236I CGCG 3 cut(s) 32, 201, 1064
BshFI GGCC 5 cut(s) 204, 468, 512, 1149, 1553
BsiHKAI GWGCWC 3 cut(s) 78, 618, 917
BslFI GGGAC 3 cut(s) 650, 1162, 1323
BslI CCNNNNNNNGG 4 cut(s) 211, 1129, 1180, 1428
BsmAI GTCTC 1 cut(s) 599
BsmFI GGGAC 3 cut(s) 650, 1162, 1323
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 5 cut(s) 204, 468, 512, 1149, 1553
Bsp1286I GDGCHC 4 cut(s) 78, 294, 618, 917
BspACI CCGC 5 cut(s) 199, 201, 640, 1064, 1598
BspANI GGCC 5 cut(s) 204, 468, 512, 1149, 1553
BspCNI CTCAG 4 cut(s) 358, 802, 819, 1519
BspFNI CGCG 3 cut(s) 32, 201, 1064
BspLI GGNNCC 3 cut(s) 511, 638, 1026
BspMAI CTGCAG 1 cut(s) 1765
BspMI ACCTGC 2 cut(s) 1603, 1621
BspPI GGATC 8 cut(s) 416, 992, 1005, 1019, 1032, 1037, 1455, 1802
BsrDI GCAATG 3 cut(s) 582, 1273, 1557
BsrI ACTGG 2 cut(s) 59, 1311
BssECI CCNNGG 6 cut(s) 199, 365, 548, 843, 1179, 1292
BssNAI GTATAC 1 cut(s) 570
BssNI GRCGYC 1 cut(s) 978
BssT1I CCWWGG 3 cut(s) 365, 843, 1292
Bst1107I GTATAC 1 cut(s) 570
Bst2UI CCWGG 4 cut(s) 142, 470, 550, 1181
Bst4CI ACNGT 1 cut(s) 925
Bst6I CTCTTC 4 cut(s) 786, 795, 1035, 1701
BstACI GRCGYC 1 cut(s) 978
BstC8I GCNNGC 2 cut(s) 294, 1167
BstDEI CTNAG 5 cut(s) 126, 345, 810, 827, 1527
BstDSI CCRYGG 1 cut(s) 199
BstFNI CGCG 3 cut(s) 32, 201, 1064
BstMAI GTCTC 1 cut(s) 599
BstMWI GCNNNNNNNGC 7 cut(s) 227, 284, 293, 1133, 1529, 1532, 1559
BstNI CCWGG 4 cut(s) 142, 470, 550, 1181
BstNSI RCATGY 2 cut(s) 498, 1165
BstSCI CCNGG 4 cut(s) 140, 468, 548, 1179
BstSFI CTRYAG 1 cut(s) 1761
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 3 cut(s) 32, 201, 1064
BstV1I GCAGC 8 cut(s) 75, 157, 1181, 1283, 1495, 1510, 1519, 1561
BstX2I RGATCY 3 cut(s) 421, 1024, 1540
BstXI CCANNNNNNTGG 2 cut(s) 66, 556
BstYI RGATCY 3 cut(s) 421, 1024, 1540
BstZ17I GTATAC 1 cut(s) 570
BsuI GTATCC 2 cut(s) 943, 1454
BsuRI GGCC 5 cut(s) 204, 468, 512, 1149, 1553
BtgI CCRYGG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 66, 231
BveI ACCTGC 2 cut(s) 1603, 1621
Cac8I GCNNGC 2 cut(s) 294, 1167
CaiI CAGNNNCTG 4 cut(s) 923, 1040, 1497, 1508
Cfr13I GGNCC 3 cut(s) 203, 510, 637
Cfr42I CCGCGG 1 cut(s) 202
CseI GACGC 1 cut(s) 38
Csp6I GTAC 3 cut(s) 54, 445, 897
CviAII CATG 8 cut(s) 495, 514, 521, 1015, 1124, 1162, 1437, 1802
CviQI GTAC 3 cut(s) 54, 445, 897
DdeI CTNAG 5 cut(s) 126, 345, 810, 827, 1527
Eam1104I CTCTTC 4 cut(s) 786, 795, 1035, 1701
EarI CTCTTC 4 cut(s) 786, 795, 1035, 1701
Ecl136II GAGCTC 1 cut(s) 616
Eco130I CCWWGG 3 cut(s) 365, 843, 1292
Eco24I GRGCYC 2 cut(s) 294, 618
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 616
Eco57I CTGAAG 2 cut(s) 207, 1692
EcoICRI GAGCTC 1 cut(s) 616
EcoRI GAATTC 1 cut(s) 1103
EcoRII CCWGG 4 cut(s) 140, 468, 548, 1179
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 3 cut(s) 365, 843, 1292
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 2 cut(s) 294, 618
ErhI CCWWGG 3 cut(s) 365, 843, 1292
FaeI CATG 8 cut(s) 498, 517, 524, 1018, 1127, 1165, 1440, 1805
FaqI GGGAC 3 cut(s) 650, 1162, 1323
FatI CATG 8 cut(s) 494, 513, 520, 1014, 1123, 1161, 1436, 1801
FauI CCCGC 1 cut(s) 1057
FblI GTMKAC 1 cut(s) 569
Fnu4HI GCNGC 9 cut(s) 89, 146, 202, 1170, 1272, 1509, 1524, 1533, 1575
FriOI GRGCYC 2 cut(s) 294, 618
Fsp4HI GCNGC 9 cut(s) 89, 146, 202, 1170, 1272, 1509, 1524, 1533, 1575
FspBI CTAG 7 cut(s) 149, 240, 390, 674, 1253, 1275, 1293
GluI GCNGC 9 cut(s) 89, 146, 202, 1170, 1272, 1509, 1524, 1533, 1575
GsaI CCCAGC 2 cut(s) 291, 1347
GsuI CTGGAG 2 cut(s) 42, 1599
HaeIII GGCC 5 cut(s) 204, 468, 512, 1149, 1553
HgaI GACGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 978
Hin1II CATG 8 cut(s) 498, 517, 524, 1018, 1127, 1165, 1440, 1805
HincII GTYRAC 4 cut(s) 138, 982, 1411, 1482
HindII GTYRAC 4 cut(s) 138, 982, 1411, 1482
HinfI GANTC 2 cut(s) 46, 692
HpaI GTTAAC 1 cut(s) 1482
HphI GGTGA 4 cut(s) 188, 785, 1079, 1790
Hpy166II GTNNAC 8 cut(s) 28, 76, 138, 570, 982, 1411, 1482, 1798
Hpy188I TCNGA 6 cut(s) 421, 501, 828, 1540, 1545, 1742
Hpy188III TCNNGA 7 cut(s) 106, 590, 696, 928, 944, 1034, 1253
Hpy8I GTNNAC 8 cut(s) 28, 76, 138, 570, 982, 1411, 1482, 1798
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 7 cut(s) 481, 592, 705, 1438, 1543, 1692, 1810
HpyCH4III ACNGT 1 cut(s) 925
HpyCH4IV ACGT 2 cut(s) 35, 978
HpyF10VI GCNNNNNNNGC 7 cut(s) 227, 284, 293, 1133, 1529, 1532, 1559
HpyF3I CTNAG 5 cut(s) 126, 345, 810, 827, 1527
HpySE526I ACGT 2 cut(s) 35, 978
Hsp92I GRCGYC 1 cut(s) 978
Hsp92II CATG 8 cut(s) 498, 517, 524, 1018, 1127, 1165, 1440, 1805
KspAI GTTAAC 1 cut(s) 1482
KspI CCGCGG 1 cut(s) 202
LmnI GCTCC 4 cut(s) 560, 592, 912, 1297
Lsp1109I GCAGC 8 cut(s) 75, 157, 1181, 1283, 1495, 1510, 1519, 1561
LweI GCATC 6 cut(s) 196, 646, 668, 1027, 1544, 1681
MaeI CTAG 7 cut(s) 149, 240, 390, 674, 1253, 1275, 1293
MaeII ACGT 2 cut(s) 35, 978
MaeIII GTNAC 2 cut(s) 516, 1756
MflI RGATCY 3 cut(s) 421, 1024, 1540
MhlI GDGCHC 4 cut(s) 78, 294, 618, 917
MlyI GAGTC 1 cut(s) 40
Mph1103I ATGCAT 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 1287
MseI TTAA 4 cut(s) 722, 1215, 1481, 1680
MslI CAYNNNNRTG 3 cut(s) 1160, 1422, 1803
MspA1I CMGCKG 3 cut(s) 201, 302, 642
MspR9I CCNGG 4 cut(s) 142, 470, 550, 1181
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 4 cut(s) 142, 470, 550, 1181
MvnI CGCG 3 cut(s) 32, 201, 1064
MwoI GCNNNNNNNGC 7 cut(s) 227, 284, 293, 1133, 1529, 1532, 1559
NlaIII CATG 8 cut(s) 498, 517, 524, 1018, 1127, 1165, 1440, 1805
NlaIV GGNNCC 3 cut(s) 511, 638, 1026
NmuCI GTSAC 1 cut(s) 516
NsiI ATGCAT 1 cut(s) 661
NspI RCATGY 2 cut(s) 498, 1165
OliI CACNNNNGTG 1 cut(s) 1422
PaqCI CACCTGC 1 cut(s) 1603
PctI GAATGC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 1287
PfeI GAWTC 1 cut(s) 692
PkrI GCNGC 9 cut(s) 90, 147, 203, 1171, 1273, 1510, 1525, 1534, 1576
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PsiI TTATAA 1 cut(s) 1197
Psp124BI GAGCTC 1 cut(s) 618
Psp6I CCWGG 4 cut(s) 140, 468, 548, 1179
PspFI CCCAGC 2 cut(s) 287, 1343
PspGI CCWGG 4 cut(s) 140, 468, 548, 1179
PspN4I GGNNCC 3 cut(s) 511, 638, 1026
PspPI GGNCC 3 cut(s) 203, 510, 637
PstI CTGCAG 1 cut(s) 1765
PstNI CAGNNNCTG 4 cut(s) 923, 1040, 1497, 1508
PsuI RGATCY 3 cut(s) 421, 1024, 1540
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 3 cut(s) 55, 446, 898
RsaNI GTAC 3 cut(s) 54, 445, 897
RseI CAYNNNNRTG 3 cut(s) 1160, 1422, 1803
SacI GAGCTC 1 cut(s) 618
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 4 cut(s) 722, 1215, 1481, 1680
SatI GCNGC 9 cut(s) 89, 146, 202, 1170, 1272, 1509, 1524, 1533, 1575
Sau96I GGNCC 3 cut(s) 203, 510, 637
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 4 cut(s) 142, 470, 550, 1181
SduI GDGCHC 4 cut(s) 78, 294, 618, 917
SfaNI GCATC 6 cut(s) 196, 646, 668, 1027, 1544, 1681
SfcI CTRYAG 1 cut(s) 1761
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 1 cut(s) 637
SmiMI CAYNNNNRTG 3 cut(s) 1160, 1422, 1803
SsiI CCGC 5 cut(s) 199, 201, 640, 1064, 1598
SspMI CTAG 7 cut(s) 149, 240, 390, 674, 1253, 1275, 1293
SstI GAGCTC 1 cut(s) 618
StyD4I CCNGG 4 cut(s) 140, 468, 548, 1179
StyI CCWWGG 3 cut(s) 365, 843, 1292
TaaI ACNGT 1 cut(s) 925
TaiI ACGT 2 cut(s) 38, 981
TaqI TCGA 4 cut(s) 49, 309, 618, 1486
TatI WGTACW 1 cut(s) 53
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 692
Tru1I TTAA 4 cut(s) 722, 1215, 1481, 1680
Tru9I TTAA 4 cut(s) 722, 1215, 1481, 1680
TscAI CASTG 2 cut(s) 66, 231
TseFI GTSAC 1 cut(s) 516
TseI GCWGC 8 cut(s) 88, 145, 1169, 1271, 1508, 1523, 1532, 1574
Tsp45I GTSAC 1 cut(s) 516
TspRI CASTG 2 cut(s) 66, 231
VneI GTGCAC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 637
XapI RAATTY 5 cut(s) 716, 931, 1055, 1103, 1222
XbaI TCTAGA 1 cut(s) 1252
XceI RCATGY 2 cut(s) 498, 1165
XmaJI CCTAGG 1 cut(s) 1292
XmiI GTMKAC 1 cut(s) 569
XmnI GAANNNNTTC 1 cut(s) 1287
XspI CTAG 7 cut(s) 149, 240, 390, 674, 1253, 1275, 1293
ZraI GACGTC 1 cut(s) 979
ZrmI AGTACT 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.