Rroxscaffold_3G00270180

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001496
Physical Location & Seq
Forward (+)
62802501 .. 62803823
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270180.1

Sequence Viewer

Length: 1257 bp
ATGGTGTCGACAAATCGGCATATAATTGACAAATCGTTAGTGGCTCCATTTAAATCCAGGCAAGAGCATCGCAAGAACATTGAATTGGAAGAAGCGCGTAAGGCTGGGCTTGTACCTGCTGAAGTCGATAAGAATGGAAAGGAGATCAATCCTCATATACCCAAATATGTGGCTGATACACCTTGGTATATCAAAACCGAGGAGGGACCTAGTCTAGAGCATCAAAGAAAGCCCGAATCAAATGTGAATAGCAAGAAGAAATCACAGTATGACAGAGGTGCAAAACTATTCCAGGCCCTCACATATAGGAAGGGTACATGTACGAACTGTGGATCCATGAAACATGATGCCAAGTCATGTACCAAAAGACCGAGGAAAGTTGGAGCAAAATGGACTGGCAAGTACATTGCTCCGGATGAGATGATAGAGACTCTTGGACTTCTCAGCTATGATGAAAAACGGGACCGGTGGAATGGATATAATCCATCAAGCTATGCCCATAAATTAGAAGATGAGACTGATGATATCAGGGTAGATGAAGCCAAGGCTGATGAGAGCAAGCAAACAGACTTCGCAAAGGTCGAGAAGCGTGTGCGCACAACGGGTGGTGGAAGCACTGGAACTGTCAGGAACTTGCGTATTCGTGAGGAGACAGCAAAATATCTTCGGAATCTTGATGTCAACTCTGCGCATTATGATCCGAAAAGCCGGTCCATGCGTGAAAACCCTAATCCAGATGCAGATCCGAACGAGCAGTTTTACGTGGGAGATAATGTATGGAGAAACACTGGTCAAGCTCTGGAGTTCAGGCAGATGAACATTCATGCTTTGGAAGCATTTGAGAGGGGACAAGATGTTCATATGCAAGCAGCTCCATCCCAAGCTGAGTTTCTTTATAAAAATTATAAGGCGATTAAGGAGAGATTGACTTCACAGACGAATTGCACCATTCTAGAAAAGTATGGCAATGCAGCTAGTGGAGAAGAACTTACTAAGGAGCTTCTACTGGGACAGAGCGAAAGAGATGTTGAATATGATCGAGCTGGGAGGATCATCAAGGGCGAGGAAGAAGCAGTTCCGCGGAGCAAATATGCAGAAGATGTCAGTATCAACAACCACACTTGTGTGTGGGGTTCGTGGTGGAAAGGTCACCAATGGGGGTACAAGTGTTGTAAGCAGTTAATGCGAAACAGTTATTGCACAGGTGCTGCAGGAGTTGAGGCTGCCGAGGCTGCAATACATCTCATGGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

418

Amino Acids

47.67

Weight (kDa)

8.42

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 173 - 379 2.1e-72 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 897, 906
Acc16I TGCGCA 2 cut(s) 596, 690
Acc36I ACCTGC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 8
AccII CGCG 2 cut(s) 97, 1081
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 2 cut(s) 1079, 1081
AclWI GGATC 5 cut(s) 327, 340, 692, 737, 1058
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 6 cut(s) 114, 316, 322, 361, 404, 1163
AflIII ACRYGT 1 cut(s) 317
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 83, 1031
AjnI CCWGG 2 cut(s) 56, 291
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 873, 905
AleI CACNNNNGTG 2 cut(s) 1122, 1124
AloI GAACNNNNNNTCC 4 cut(s) 317, 349, 840, 872
AluBI AGCT 8 cut(s) 447, 492, 797, 872, 884, 974, 1000, 1043
AluI AGCT 8 cut(s) 447, 492, 797, 872, 884, 974, 1000, 1043
Alw26I GTCTC 3 cut(s) 422, 509, 644
AlwI GGATC 5 cut(s) 327, 340, 692, 737, 1058
AlwNI CAGNNNCTG 1 cut(s) 1208
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 5 cut(s) 869, 971, 1208, 1223, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
AsiGI ACCGGT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 1074
AspLEI GCGC 3 cut(s) 97, 597, 691
AspS9I GGNCC 4 cut(s) 206, 295, 463, 711
AsuHPI GGTGA 1 cut(s) 1142
AvaII GGWCC 3 cut(s) 206, 463, 711
BaeI ACNNNNGTAYC 2 cut(s) 1153, 1186
BamHI GGATCC 1 cut(s) 332
BbvI GCAGC 5 cut(s) 881, 983, 1195, 1210, 1219
BccI CCATC 2 cut(s) 493, 883
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 58, 293
BcoDI GTCTC 3 cut(s) 422, 509, 644
BfaI CTAG 4 cut(s) 210, 215, 953, 975
BfmI CTRYAG 1 cut(s) 1209
BfuAI ACCTGC 1 cut(s) 124
BisI GCNGC 5 cut(s) 870, 972, 1209, 1224, 1233
BlsI GCNGC 5 cut(s) 871, 973, 1210, 1225, 1234
Bme1390I CCNGG 2 cut(s) 58, 293
Bme18I GGWCC 3 cut(s) 206, 463, 711
BmgT120I GGNCC 4 cut(s) 206, 295, 463, 711
BmiI GGNNCC 5 cut(s) 45, 207, 334, 464, 1251
BmrFI CCNGG 2 cut(s) 58, 293
BmrI ACTGGG 1 cut(s) 1016
BmsI GCATC 4 cut(s) 76, 229, 337, 727
BmuI ACTGGG 1 cut(s) 1016
BpmI CTGGAG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 6 cut(s) 182, 198, 371, 543, 1079, 1227
BsaWI WCCGGW 2 cut(s) 412, 465
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bse118I RCCGGY 2 cut(s) 465, 708
Bse1I ACTGG 4 cut(s) 400, 622, 793, 1011
Bse3DI GCAATG 2 cut(s) 405, 973
Bse8I GATNNNNATC 1 cut(s) 741
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 2 cut(s) 58, 293
BseDI CCNNGG 6 cut(s) 182, 198, 371, 543, 1079, 1227
BseGI GGATG 2 cut(s) 421, 875
BseJI GATNNNNATC 1 cut(s) 741
BseMI GCAATG 2 cut(s) 405, 973
BseMII CTCAG 2 cut(s) 457, 876
BseNI ACTGG 4 cut(s) 400, 622, 793, 1011
BseRI GAGGAG 2 cut(s) 215, 662
BseXI GCAGC 5 cut(s) 881, 983, 1195, 1210, 1219
BseYI CCCAGC 2 cut(s) 104, 1043
Bsh1236I CGCG 2 cut(s) 97, 1081
BshFI GGCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 465
BsiSI CCGG 3 cut(s) 413, 466, 709
BslFI GGGAC 4 cut(s) 219, 476, 861, 1023
BsmAI GTCTC 3 cut(s) 422, 509, 644
BsmFI GGGAC 4 cut(s) 219, 476, 861, 1023
BsnI GGCC 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
BspACI CCGC 2 cut(s) 1079, 1081
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 456, 877
BspEI TCCGGA 1 cut(s) 412
BspFNI CGCG 2 cut(s) 97, 1081
BspLI GGNNCC 5 cut(s) 45, 207, 334, 464, 1251
BspMAI CTGCAG 1 cut(s) 1213
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 5 cut(s) 327, 340, 692, 737, 1058
BsrDI GCAATG 2 cut(s) 405, 973
BsrFI RCCGGY 2 cut(s) 465, 708
BsrI ACTGG 4 cut(s) 400, 622, 793, 1011
BssAI RCCGGY 2 cut(s) 465, 708
BssECI CCNNGG 6 cut(s) 182, 198, 371, 543, 1079, 1227
BssMI GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
BssT1I CCWWGG 2 cut(s) 182, 543
Bst2UI CCWGG 2 cut(s) 58, 293
Bst4CI ACNGT 4 cut(s) 267, 329, 625, 1193
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 560, 867
BstDEI CTNAG 3 cut(s) 443, 885, 993
BstDSI CCRYGG 1 cut(s) 1079
BstEII GGTNACC 1 cut(s) 1148
BstF5I GGATG 2 cut(s) 421, 875
BstFNI CGCG 2 cut(s) 97, 1081
BstHHI GCGC 3 cut(s) 97, 597, 691
BstKTI GATC 6 cut(s) 147, 335, 700, 745, 1039, 1053
BstMAI GTCTC 3 cut(s) 422, 509, 644
BstMBI GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
BstMWI GCNNNNNNNGC 5 cut(s) 101, 833, 1183, 1229, 1232
BstNI CCWGG 2 cut(s) 58, 293
BstNSI RCATGY 1 cut(s) 321
BstPI GGTNACC 1 cut(s) 1148
BstSCI CCNGG 2 cut(s) 56, 291
BstSFI CTRYAG 1 cut(s) 1209
BstUI CGCG 2 cut(s) 97, 1081
BstV1I GCAGC 5 cut(s) 881, 983, 1195, 1210, 1219
BstX2I RGATCY 2 cut(s) 332, 742
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 2 cut(s) 332, 742
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 1079
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 421, 875
BtsIMutI CAGTG 2 cut(s) 615, 786
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 560, 867
CaiI CAGNNNCTG 1 cut(s) 1208
CfoI GCGC 3 cut(s) 97, 597, 691
Cfr10I RCCGGY 2 cut(s) 465, 708
Cfr13I GGNCC 4 cut(s) 206, 295, 463, 711
Cfr42I CCGCGG 1 cut(s) 1082
Csp6I GTAC 6 cut(s) 113, 315, 321, 360, 403, 1162
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 7 cut(s) 318, 337, 344, 357, 715, 824, 1246
CviQI GTAC 6 cut(s) 113, 315, 321, 360, 403, 1162
DdeI CTNAG 3 cut(s) 443, 885, 993
DpnI GATC 6 cut(s) 146, 334, 699, 744, 1038, 1052
DpnII GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
DraI TTTAAA 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 182, 543
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 3 cut(s) 206, 463, 711
Eco57I CTGAAG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 1148
EcoO109I RGGNCCY 2 cut(s) 206, 295
EcoO65I GGTNACC 1 cut(s) 1148
EcoRII CCWGG 2 cut(s) 56, 291
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 182, 543
ErhI CCWWGG 2 cut(s) 182, 543
FaeI CATG 7 cut(s) 321, 340, 347, 360, 718, 827, 1249
FaqI GGGAC 4 cut(s) 219, 476, 861, 1023
FatI CATG 7 cut(s) 317, 336, 343, 356, 714, 823, 1245
FauNDI CATATG 1 cut(s) 861
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 5 cut(s) 870, 972, 1209, 1224, 1233
FokI GGATG 2 cut(s) 428, 862
Fsp4HI GCNGC 5 cut(s) 870, 972, 1209, 1224, 1233
FspAI RTGCGCAY 1 cut(s) 596
FspBI CTAG 4 cut(s) 210, 215, 953, 975
FspI TGCGCA 2 cut(s) 596, 690
GlaI GCGC 3 cut(s) 96, 596, 690
GluI GCNGC 5 cut(s) 870, 972, 1209, 1224, 1233
GsaI CCCAGC 2 cut(s) 108, 1047
GsuI CTGGAG 1 cut(s) 821
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 413, 466, 709
HhaI GCGC 3 cut(s) 97, 597, 691
Hin1II CATG 7 cut(s) 321, 340, 347, 360, 718, 827, 1249
Hin6I GCGC 3 cut(s) 95, 595, 689
HinP1I GCGC 3 cut(s) 95, 595, 689
HincII GTYRAC 2 cut(s) 9, 682
HindII GTYRAC 2 cut(s) 9, 682
HinfI GANTC 3 cut(s) 236, 430, 670
HpaII CCGG 3 cut(s) 413, 466, 709
HphI GGTGA 1 cut(s) 1142
Hpy166II GTNNAC 2 cut(s) 9, 682
Hpy188I TCNGA 3 cut(s) 669, 702, 747
Hpy188III TCNNGA 9 cut(s) 215, 413, 583, 628, 644, 674, 734, 800, 953
Hpy8I GTNNAC 2 cut(s) 9, 682
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 4 cut(s) 267, 329, 625, 1193
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 9 cut(s) 281, 740, 865, 945, 971, 1094, 1200, 1211, 1235
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 833, 1183, 1229, 1232
HpyF3I CTNAG 3 cut(s) 443, 885, 993
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 7 cut(s) 321, 340, 347, 360, 718, 827, 1249
HspAI GCGC 3 cut(s) 95, 595, 689
Kpn2I TCCGGA 1 cut(s) 412
KspI CCGCGG 1 cut(s) 1082
Kzo9I GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
LmnI GCTCC 7 cut(s) 49, 383, 415, 877, 997, 1083, 1249
Lsp1109I GCAGC 5 cut(s) 881, 983, 1195, 1210, 1219
LweI GCATC 4 cut(s) 76, 229, 337, 727
MaeI CTAG 4 cut(s) 210, 215, 953, 975
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 1 cut(s) 1148
MalI GATC 6 cut(s) 146, 334, 699, 744, 1038, 1052
MboI GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
MboII GAAGA 7 cut(s) 101, 268, 521, 656, 995, 1079, 1109
MflI RGATCY 2 cut(s) 332, 742
MluCI AATT 5 cut(s) 24, 83, 503, 901, 940
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 361
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 4 cut(s) 51, 915, 1181, 1255
MslI CAYNNNNRTG 2 cut(s) 1122, 1124
MspA1I CMGCKG 1 cut(s) 1081
MspI CCGG 3 cut(s) 413, 466, 709
MspR9I CCNGG 2 cut(s) 58, 293
MvaI CCWGG 2 cut(s) 58, 293
MvnI CGCG 2 cut(s) 97, 1081
MwoI GCNNNNNNNGC 5 cut(s) 101, 833, 1183, 1229, 1232
NdeI CATATG 1 cut(s) 861
NdeII GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
NlaIII CATG 7 cut(s) 321, 340, 347, 360, 718, 827, 1249
NlaIV GGNNCC 5 cut(s) 45, 207, 334, 464, 1251
NmeAIII GCCGAG 1 cut(s) 1252
NmuCI GTSAC 1 cut(s) 1148
NsbI TGCGCA 2 cut(s) 596, 690
NspI RCATGY 1 cut(s) 321
OliI CACNNNNGTG 2 cut(s) 1122, 1124
PciI ACATGT 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 2 cut(s) 236, 670
PflFI GACNNNGTC 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 5 cut(s) 871, 973, 1210, 1225, 1234
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 763
PpuMI RGGWCCY 1 cut(s) 206
PscI ACATGT 1 cut(s) 317
PsiI TTATAA 2 cut(s) 897, 906
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 56, 291
PspEI GGTNACC 1 cut(s) 1148
PspFI CCCAGC 2 cut(s) 104, 1043
PspGI CCWGG 2 cut(s) 56, 291
PspN4I GGNNCC 5 cut(s) 45, 207, 334, 464, 1251
PspPI GGNCC 4 cut(s) 206, 295, 463, 711
PspPPI RGGWCCY 1 cut(s) 206
PstI CTGCAG 1 cut(s) 1213
PstNI CAGNNNCTG 1 cut(s) 1208
PsuI RGATCY 2 cut(s) 332, 742
PsyI GACNNNGTC 1 cut(s) 210
RsaI GTAC 6 cut(s) 114, 316, 322, 361, 404, 1163
RsaNI GTAC 6 cut(s) 113, 315, 321, 360, 403, 1162
RseI CAYNNNNRTG 2 cut(s) 1122, 1124
SacII CCGCGG 1 cut(s) 1082
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 4 cut(s) 51, 915, 1181, 1255
SatI GCNGC 5 cut(s) 870, 972, 1209, 1224, 1233
Sau3AI GATC 6 cut(s) 144, 332, 697, 742, 1036, 1050
Sau96I GGNCC 4 cut(s) 206, 295, 463, 711
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 58, 293
SfaNI GCATC 4 cut(s) 76, 229, 337, 727
SfcI CTRYAG 1 cut(s) 1209
Sfr303I CCGCGG 1 cut(s) 1082
SgrBI CCGCGG 1 cut(s) 1082
SinI GGWCC 3 cut(s) 206, 463, 711
SmiI ATTTAAAT 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 1122, 1124
Sse9I AATT 5 cut(s) 24, 83, 503, 901, 940
SsiI CCGC 2 cut(s) 1079, 1081
SspMI CTAG 4 cut(s) 210, 215, 953, 975
StyD4I CCNGG 2 cut(s) 56, 291
StyI CCWWGG 2 cut(s) 182, 543
SwaI ATTTAAAT 1 cut(s) 52
TaaI ACNGT 4 cut(s) 267, 329, 625, 1193
TaiI ACGT 1 cut(s) 765
TaqI TCGA 4 cut(s) 8, 126, 582, 1039
TaqII GACCGA 1 cut(s) 385
TasI AATT 5 cut(s) 24, 83, 503, 901, 940
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 2 cut(s) 236, 670
Tru1I TTAA 4 cut(s) 51, 915, 1181, 1255
Tru9I TTAA 4 cut(s) 51, 915, 1181, 1255
TscAI CASTG 2 cut(s) 622, 793
TseFI GTSAC 1 cut(s) 1148
TseI GCWGC 5 cut(s) 869, 971, 1208, 1223, 1232
Tsp45I GTSAC 1 cut(s) 1148
TspDTI ATGAA 6 cut(s) 353, 468, 552, 812, 830, 848
TspRI CASTG 2 cut(s) 622, 793
Tth111I GACNNNGTC 1 cut(s) 210
VpaK11BI GGWCC 3 cut(s) 206, 463, 711
XbaI TCTAGA 2 cut(s) 214, 952
XceI RCATGY 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 4 cut(s) 210, 215, 953, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.