Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001496

Physical Location & Seq

Genomic Coordinates Forward (+)

9556518 .. 9561557

Gene Structure 5040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG045400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGACACATAATGCAAAGTCCTGCATGGAGAGGCCTAGAAAGAAAGGAGCAAAATGGACTAGCATGCACATTGCACCTGATGAAAAGATAGAGATCTTCGAGCTGGATTATGATGGCAAAAGGGATAGATGGAATGGTTTTGATGCTGCAACTTATGCTCGTGTCATTGAGAGATATGAAACAAGGGATGAGGCTAGAAGGAAGTACCTGAAAGAGCAGCAGCTGAAAAGGTTAGAGGAGAAAAATAGTAAGCAGAATGGAGAGGGGGAGGTCAGTGATGACGATGAGTATGAAGATGCTCTGAAGGTCGATGAGGCCAAGGTTGATGAAAGCAAACAAATGGATTTTGCAAAGGTTGAGAAGCGTGTTCGCACAACCGGTGGTGGAAGCACAGGAACTGTCAGAAATTTGCGTATTCGGGAGGACACAGCGAAGTATCTTTTAAACCTTGATGTCAACTCTGCTTATTATGATCCCAAAACTCGGTCCATGCGTGAAGATCCTCTTCCTGATGCTGACCCAAATGAGAAATTTTACGCAGGAGATAACAAATACAGAGTGAGTGGGCAAGCTTTAGATTTCAAGCAGGTCAATATTCATGCATGGGAAGCATTTGAAAAAGGACAAGATGTGCACATGCAAGCTGCTCCATCTCAAGCGGAATTGCTTTTTAAGAACTATAAGGTCATTAAGGAGAAGTTGAAGTCAAAAATGAAAGATGCCATTATGGAGAAGTATGGGAATGCTGCAACTTTAGAAGAACTTCCTAAGGAGCTTCTTTTTGGACAAACTGAGAAAGAAGTTGAATACGACCGTGCTGGAAGAGTTATAAAGGGCATGGAGACATCCTTGCCGAAAAGCAAGTATGAGGAGGATGTTTACATCAATAACCACACAAGTGTCTGGGGGTCATGGTGGAAGGATCACCAATGGGGCTACAAGTGTTGCAAGCAAACAATTCAGAACAGTTATTGCACTGGTGCAGCTGGAATTGAGGCATCTGAATCAGCTGCCAACCTAATGAAGGCAAATATTGACCGCAAAGCAGCCTCTGAAGAGACCTCCTCTCCAACAGAAGAGAAAAGGCTTGCTACTTGGGGAGCTGATATACCTGAAGACTTGGAGCTTGACCAGAAAAAACTTGGTGATGCTCTTAAGAAGGAGGATGAGAGAAGGAAGGAAGAGAAGGATGAAAGAAAGCGTAAATATAATGTTACATGGAATGATGAGGTTACTCCTGAGGAGATGGAGGCATATCGGATGAAAAAGGTACATCATGATGATCCGATGAAAGATTTTGTGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

435

Amino Acids

50.6

Weight (kDa)

5.76

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Slu7	PF11708	35 - 304	2.3e-95	Pre-mRNA splicing Prp18-interacting factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65660 AT3G45950 AT4G37120
fragaria_vesca	FvH4_2g21480 FvH4_4g03640 FvH4_5g13320
malus_domestica	MD05G1197300.v1.1 MD10G1184000.v1.1 MD16G1219100.v1.1
prunus_persica	Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.8G223800_v2.0.a1
pyrus_communis	pycom05g18440 pycom10g15930 pycom16g18260
rosa_chinensis	RchiOBHm_Chr4g0393021 RchiOBHm_Chr6g0288131 RchiOBHm_Chr7g0183821
rosa_laevigata	RLG00000005020 RLG00000009774
rosa_multiflora	Rmu_sc0003610.1_g000043 Rmu_sc0010766.1_g000006 Rmu_sc0034700.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270180 Rroxscaffold_5G00338120 Rroxscaffold_7G00180470
rosa_rugosa	Rorug04G0002700 Rorug04G0002800 Rorug06G0194300 Rorug06G0460700 Rorug06G0460800
rosa_samantha	Rh4AG045400 Rh4BG041400 Rh4CG049000 Rh4DG043300 Rh6AG304700 Rh6BG310700 Rh6CG318800 Rh6DG303700 Rh7AG061400 Rh7BG061500 Rh7CG063100 Rh7DG061500
rosa_wichuraiana	Rw4G003580 Rw6G026360 Rw7G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
Acc36I	ACCTGC	1 cut(s)	577
AciI	CCGC	2 cut(s)	659, 1039
AclWI	GGATC	4 cut(s)	467, 494, 930, 1277
AcsI	RAATTY	2 cut(s)	406, 530
AcuI	CTGAAG	3 cut(s)	323, 1074, 1134
AfaI	GTAC	2 cut(s)	206, 1272
AfiI	CCNNNNNNNGG	2 cut(s)	483, 1024
AflII	CTTAAG	1 cut(s)	1154
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	583, 617, 703, 806
AleI	CACNNNNGTG	1 cut(s)	897
AluBI	AGCT	9 cut(s)	103, 223, 572, 644, 775, 986, 1010, 1103, 1126
AluI	AGCT	9 cut(s)	103, 223, 572, 644, 775, 986, 1010, 1103, 1126
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	2 cut(s)	836, 1052
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	4 cut(s)	467, 494, 930, 1277
AlwNI	CAGNNNCTG	3 cut(s)	223, 398, 1052
AoxI	GGCC	2 cut(s)	32, 315
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	8 cut(s)	146, 217, 220, 644, 746, 983, 1010, 1046
ApoI	RAATTY	2 cut(s)	406, 530
AsiGI	ACCGGT	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	1305
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	2 cut(s)	917, 1157
AvaII	GGWCC	1 cut(s)	486
AxyI	CCTNAGG	2 cut(s)	768, 1239
BaeGI	GKGCMC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	1122
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	8 cut(s)	133, 229, 232, 631, 733, 995, 997, 1058
BccI	CCATC	4 cut(s)	107, 123, 658, 1240
BcoDI	GTCTC	2 cut(s)	836, 1052
BfaI	CTAG	4 cut(s)	36, 60, 195, 1306
BfrI	CTTAAG	1 cut(s)	1154
BfuAI	ACCTGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	8 cut(s)	147, 218, 221, 645, 747, 984, 1011, 1047
BlsI	GCNGC	8 cut(s)	148, 219, 222, 646, 748, 985, 1012, 1048
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmsI	GCATC	6 cut(s)	133, 286, 502, 709, 1007, 1138
BpiI	GAAGAC	1 cut(s)	1122
BplI	GAGNNNNNCTC	2 cut(s)	1049, 1081
BpuEI	CTTGAG	1 cut(s)	639
BsaBI	GATNNNNATC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	1052
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	1051, 1081
Bsc4I	CCNNNNNNNGG	2 cut(s)	483, 1024
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	982
Bse21I	CCTNAGG	2 cut(s)	768, 1239
Bse3DI	GCAATG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	6 cut(s)	193, 845, 880, 1171, 1195, 1266
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	483, 1024
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	783, 1230
BseNI	ACTGG	1 cut(s)	982
BseRI	GAGGAG	4 cut(s)	251, 884, 1054, 1256
BseSI	GKGCMC	1 cut(s)	636
BseXI	GCAGC	8 cut(s)	133, 229, 232, 631, 733, 995, 997, 1058
BsgI	GTGCAG	1 cut(s)	1002
Bsh1285I	CGRYCG	1 cut(s)	814
BshFI	GGCC	2 cut(s)	34, 317
BshTI	ACCGGT	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	483, 1024
BsmAI	GTCTC	2 cut(s)	836, 1052
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	2 cut(s)	34, 317
Bso31I	GGTCTC	1 cut(s)	1052
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	5 cut(s)	93, 472, 499, 922, 1282
BspACI	CCGC	2 cut(s)	659, 1039
BspANI	GGCC	2 cut(s)	34, 317
BspCNI	CTCAG	2 cut(s)	784, 1231
BspHI	TCATGA	1 cut(s)	1276
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	4 cut(s)	467, 494, 930, 1277
BspTI	CTTAAG	1 cut(s)	1154
BspTNI	GGTCTC	1 cut(s)	1052
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	982
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	5 cut(s)	93, 472, 499, 922, 1282
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	400, 815, 968
Bst6I	CTCTTC	5 cut(s)	510, 817, 1050, 1071, 1176
BstAFI	CTTAAG	1 cut(s)	1154
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	5 cut(s)	65, 570, 642, 950, 1089
BstDEI	CTNAG	3 cut(s)	768, 792, 1239
BstENI	CCTNNNNNAGG	1 cut(s)	1022
BstF5I	GGATG	6 cut(s)	193, 845, 880, 1171, 1195, 1266
BstHHI	GCGC	1 cut(s)	1305
BstKTI	GATC	5 cut(s)	96, 475, 502, 925, 1285
BstMAI	GTCTC	2 cut(s)	836, 1052
BstMBI	GATC	5 cut(s)	93, 472, 499, 922, 1282
BstMCI	CGRYCG	1 cut(s)	814
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 608
BstNSI	RCATGY	2 cut(s)	67, 640
BstSLI	GKGCMC	1 cut(s)	636
BstV1I	GCAGC	8 cut(s)	133, 229, 232, 631, 733, 995, 997, 1058
BstV2I	GAAGAC	1 cut(s)	1122
BstX2I	RGATCY	2 cut(s)	93, 499
BstYI	RGATCY	2 cut(s)	93, 499
Bsu36I	CCTNAGG	2 cut(s)	768, 1239
BsuRI	GGCC	2 cut(s)	34, 317
BtsCI	GGATG	6 cut(s)	193, 845, 880, 1171, 1195, 1266
BtsIMutI	CAGTG	2 cut(s)	280, 975
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	5 cut(s)	65, 570, 642, 950, 1089
CaiI	CAGNNNCTG	3 cut(s)	223, 398, 1052
CciI	TCATGA	1 cut(s)	1276
CfoI	GCGC	1 cut(s)	1305
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	205, 1271
CspAI	ACCGGT	1 cut(s)	377
CviQI	GTAC	2 cut(s)	205, 1271
DdeI	CTNAG	3 cut(s)	768, 792, 1239
DpnI	GATC	5 cut(s)	95, 474, 501, 924, 1284
DpnII	GATC	5 cut(s)	93, 472, 499, 922, 1282
DraI	TTTAAA	1 cut(s)	444
Eam1104I	CTCTTC	5 cut(s)	510, 817, 1050, 1071, 1176
EarI	CTCTTC	5 cut(s)	510, 817, 1050, 1071, 1176
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	1052
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	3 cut(s)	323, 1074, 1134
Eco81I	CCTNAGG	2 cut(s)	768, 1239
EcoNI	CCTNNNNNAGG	1 cut(s)	1022
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	318
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
Fnu4HI	GCNGC	8 cut(s)	147, 218, 221, 645, 747, 984, 1011, 1047
FokI	GGATG	6 cut(s)	200, 832, 887, 1178, 1202, 1273
Fsp4HI	GCNGC	8 cut(s)	147, 218, 221, 645, 747, 984, 1011, 1047
FspBI	CTAG	4 cut(s)	36, 60, 195, 1306
GlaI	GCGC	1 cut(s)	1304
GluI	GCNGC	8 cut(s)	147, 218, 221, 645, 747, 984, 1011, 1047
HaeIII	GGCC	2 cut(s)	34, 317
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	1 cut(s)	1305
Hin6I	GCGC	1 cut(s)	1303
HinP1I	GCGC	1 cut(s)	1303
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	1 cut(s)	1004
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	2 cut(s)	917, 1157
Hpy166II	GTNNAC	3 cut(s)	457, 634, 880
Hpy188I	TCNGA	7 cut(s)	303, 404, 963, 1003, 1054, 1260, 1287
Hpy188III	TCNNGA	4 cut(s)	419, 509, 1238, 1277
Hpy8I	GTNNAC	3 cut(s)	457, 634, 880
HpyAV	CCTTC	8 cut(s)	192, 298, 913, 1018, 1153, 1167, 1171, 1180
HpyCH4III	ACNGT	3 cut(s)	400, 815, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 608
HpyF3I	CTNAG	3 cut(s)	768, 792, 1239
HspAI	GCGC	1 cut(s)	1303
Kzo9I	GATC	5 cut(s)	93, 472, 499, 922, 1282
LmnI	GCTCC	5 cut(s)	47, 652, 772, 1100, 1123
Lsp1109I	GCAGC	8 cut(s)	133, 229, 232, 631, 733, 995, 997, 1058
LweI	GCATC	6 cut(s)	133, 286, 502, 709, 1007, 1138
MaeI	CTAG	4 cut(s)	36, 60, 195, 1306
MaeIII	GTNAC	2 cut(s)	1213, 1231
MalI	GATC	5 cut(s)	95, 474, 501, 924, 1284
MboI	GATC	5 cut(s)	93, 472, 499, 922, 1282
MflI	RGATCY	2 cut(s)	93, 499
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	5 cut(s)	406, 530, 662, 957, 990
MmeI	TCCRAC	1 cut(s)	1094
Mph1103I	ATGCAT	1 cut(s)	604
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	4 cut(s)	443, 672, 690, 1155
MslI	CAYNNNNRTG	2 cut(s)	897, 1278
MspA1I	CMGCKG	3 cut(s)	223, 986, 1010
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	748
MwoI	GCNNNNNNNGC	2 cut(s)	155, 608
NdeII	GATC	5 cut(s)	93, 472, 499, 922, 1282
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	2 cut(s)	67, 640
OliI	CACNNNNGTG	1 cut(s)	897
PaeI	GCATGC	1 cut(s)	67
PagI	TCATGA	1 cut(s)	1276
PceI	AGGCCT	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PctI	GAATGC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	1004
PinAI	ACCGGT	1 cut(s)	377
PkrI	GCNGC	8 cut(s)	148, 219, 222, 646, 748, 985, 1012, 1048
PsiI	TTATAA	1 cut(s)	830
PspPI	GGNCC	1 cut(s)	486
PstNI	CAGNNNCTG	3 cut(s)	223, 398, 1052
PsuI	RGATCY	2 cut(s)	93, 499
PvuII	CAGCTG	3 cut(s)	223, 986, 1010
RsaI	GTAC	2 cut(s)	206, 1272
RsaNI	GTAC	2 cut(s)	205, 1271
RseI	CAYNNNNRTG	2 cut(s)	897, 1278
SaqAI	TTAA	4 cut(s)	443, 672, 690, 1155
SatI	GCNGC	8 cut(s)	147, 218, 221, 645, 747, 984, 1011, 1047
Sau3AI	GATC	5 cut(s)	93, 472, 499, 922, 1282
Sau96I	GGNCC	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	6 cut(s)	133, 286, 502, 709, 1007, 1138
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	2 cut(s)	897, 1278
SmlI	CTYRAG	2 cut(s)	654, 1154
SmoI	CTYRAG	2 cut(s)	654, 1154
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	5 cut(s)	406, 530, 662, 957, 990
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	659, 1039
SspI	AATATT	2 cut(s)	595, 1033
SspMI	CTAG	4 cut(s)	36, 60, 195, 1306
StuI	AGGCCT	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	400, 815, 968
TaqI	TCGA	2 cut(s)	99, 309
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	5 cut(s)	406, 530, 662, 957, 990
TfiI	GAWTC	1 cut(s)	1004
Tru1I	TTAA	4 cut(s)	443, 672, 690, 1155
Tru9I	TTAA	4 cut(s)	443, 672, 690, 1155
TscAI	CASTG	2 cut(s)	280, 982
TseI	GCWGC	8 cut(s)	146, 217, 220, 644, 746, 983, 1010, 1046
TspRI	CASTG	2 cut(s)	280, 982
Vha464I	CTTAAG	1 cut(s)	1154
VneI	GTGCAC	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	486
XagI	CCTNNNNNAGG	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	406, 530
XceI	RCATGY	2 cut(s)	67, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1139
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	4 cut(s)	36, 60, 195, 1306
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.