Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001496

Physical Location & Seq

Genomic Coordinates Forward (+)

7113640 .. 7116482

Gene Structure 2843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGACACATAATGCAAAGTCCTGCATGGAGAGGCCTAGAAAGAAAGGAGCAAAATGGACTAGCATGCACATTGCACCTGATGAAAAGATAGAGATCTTCGAGCTGGATTATGATGGCAAAAGGGATAGATGGAATGGTTTTGATGCTGCAACTTATGCTCGTGTCATTGAGAGATATGAAGCAAGGGATGAGGCTAGAAGGAAGTACCTGAAAGAGCAGCAGCTGAAAAGGTTAGAGGAGAAAAATAGTAAGCAGAATGGAGAGGGGGAGGTCAGTGATGACGATGAGTATGAAGATGCTCTGAAGGTCGATGAGGCCAAGGTTGATGAAAGCAAACAAATGGATTTTGCAAAGGTTGAGAAGCGTGTTCGCACAACCGGTGGTGGAAGCACAGGAACTGTCAGAAATTTGCGTATTCGGGAGGACACAGCGAAGTATCTTTTAAACCTTGATGTCAACTCTGCTTATTATGATCCCAAAACTCGGTCCATGCGTGAAGATCCTCTTCCTGATGCTGACCCAAATGAGAAATTTTACGCAGGAGATAACAAATACAGAGTGAGTGGGCAAGCTTTAGATTTCAAGCAGCTCAATATTCATGCATGGGAAGCATTTGAAAAAGGACAAGATGTGCACATGCAAGCTGCTCCATCTCAAGCGGAATTGCTTTTTAAGAACTATAAGGTCATTAAGGAGAAGTTGAAGTCAAAAATGAAAGATGCCATTATGGAAAGTATGGGAATGCTGCAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

251

Amino Acids

29.16

Weight (kDa)

6.49

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Slu7	PF11708	35 - 247	2.2e-67	Pre-mRNA splicing Prp18-interacting factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65660 AT3G45950 AT4G37120
fragaria_vesca	FvH4_2g21480 FvH4_4g03640 FvH4_5g13320
malus_domestica	MD05G1197300.v1.1 MD10G1184000.v1.1 MD16G1219100.v1.1
prunus_persica	Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.8G223800_v2.0.a1
pyrus_communis	pycom05g18440 pycom10g15930 pycom16g18260
rosa_chinensis	RchiOBHm_Chr4g0393021 RchiOBHm_Chr6g0288131 RchiOBHm_Chr7g0183821
rosa_laevigata	RLG00000005020 RLG00000009774
rosa_multiflora	Rmu_sc0003610.1_g000043 Rmu_sc0010766.1_g000006 Rmu_sc0034700.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270180 Rroxscaffold_5G00338120 Rroxscaffold_7G00180470
rosa_rugosa	Rorug04G0002700 Rorug04G0002800 Rorug06G0194300 Rorug06G0460700 Rorug06G0460800
rosa_samantha	Rh4AG045400 Rh4BG041400 Rh4CG049000 Rh4DG043300 Rh6AG304700 Rh6BG310700 Rh6CG318800 Rh6DG303700 Rh7AG061400 Rh7BG061500 Rh7CG063100 Rh7DG061500
rosa_wichuraiana	Rw4G003580 Rw6G026360 Rw7G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	659
AclWI	GGATC	2 cut(s)	467, 494
AcsI	RAATTY	2 cut(s)	406, 530
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	583, 617, 703
AluBI	AGCT	5 cut(s)	103, 223, 572, 589, 644
AluI	AGCT	5 cut(s)	103, 223, 572, 589, 644
Alw21I	GWGCWC	1 cut(s)	636
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	467, 494
AlwNI	CAGNNNCTG	2 cut(s)	223, 398
AoxI	GGCC	2 cut(s)	32, 315
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	6 cut(s)	146, 217, 220, 586, 644, 745
ApoI	RAATTY	2 cut(s)	406, 530
AsiGI	ACCGGT	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	6 cut(s)	133, 229, 232, 598, 631, 732
BccI	CCATC	3 cut(s)	107, 123, 658
BfaI	CTAG	3 cut(s)	36, 60, 195
BfmI	CTRYAG	1 cut(s)	752
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	6 cut(s)	147, 218, 221, 587, 645, 746
BlsI	GCNGC	6 cut(s)	148, 219, 222, 588, 646, 747
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmsI	GCATC	4 cut(s)	133, 286, 502, 709
BpuEI	CTTGAG	1 cut(s)	639
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse118I	RCCGGY	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMI	GCAATG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	636
BseXI	GCAGC	6 cut(s)	133, 229, 232, 598, 631, 732
BshFI	GGCC	2 cut(s)	34, 317
BshTI	ACCGGT	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	2 cut(s)	34, 317
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	3 cut(s)	93, 472, 499
BspACI	CCGC	1 cut(s)	659
BspANI	GGCC	2 cut(s)	34, 317
BspPI	GGATC	2 cut(s)	467, 494
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	93, 472, 499
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	400, 753
Bst6I	CTCTTC	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	65, 570, 642
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	3 cut(s)	96, 475, 502
BstMBI	GATC	3 cut(s)	93, 472, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 608
BstNSI	RCATGY	2 cut(s)	67, 640
BstSFI	CTRYAG	1 cut(s)	752
BstSLI	GKGCMC	1 cut(s)	636
BstV1I	GCAGC	6 cut(s)	133, 229, 232, 598, 631, 732
BstX2I	RGATCY	2 cut(s)	93, 499
BstYI	RGATCY	2 cut(s)	93, 499
BsuRI	GGCC	2 cut(s)	34, 317
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	65, 570, 642
CaiI	CAGNNNCTG	2 cut(s)	223, 398
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	1 cut(s)	377
CviAII	CATG	6 cut(s)	25, 64, 490, 599, 603, 637
CviJI	RGCY	8 cut(s)	34, 103, 194, 223, 317, 572, 589, 644
CviKI_1	RGCY	8 cut(s)	34, 103, 194, 223, 317, 572, 589, 644
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	3 cut(s)	95, 474, 501
DpnII	GATC	3 cut(s)	93, 472, 499
DraI	TTTAAA	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	6 cut(s)	28, 67, 493, 602, 606, 640
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	6 cut(s)	24, 63, 489, 598, 602, 636
Fnu4HI	GCNGC	6 cut(s)	147, 218, 221, 587, 645, 746
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	6 cut(s)	147, 218, 221, 587, 645, 746
FspBI	CTAG	3 cut(s)	36, 60, 195
GluI	GCNGC	6 cut(s)	147, 218, 221, 587, 645, 746
HaeIII	GGCC	2 cut(s)	34, 317
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	6 cut(s)	28, 67, 493, 602, 606, 640
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	570
HpaII	CCGG	1 cut(s)	378
Hpy166II	GTNNAC	2 cut(s)	457, 634
Hpy188I	TCNGA	2 cut(s)	303, 404
Hpy188III	TCNNGA	2 cut(s)	419, 509
Hpy8I	GTNNAC	2 cut(s)	457, 634
HpyAV	CCTTC	2 cut(s)	192, 298
HpyCH4III	ACNGT	2 cut(s)	400, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 608
Hsp92II	CATG	6 cut(s)	28, 67, 493, 602, 606, 640
Kzo9I	GATC	3 cut(s)	93, 472, 499
LmnI	GCTCC	2 cut(s)	47, 652
LpnPI	CCDG	8 cut(s)	34, 89, 90, 221, 378, 391, 522, 525
Lsp1109I	GCAGC	6 cut(s)	133, 229, 232, 598, 631, 732
LweI	GCATC	4 cut(s)	133, 286, 502, 709
MaeI	CTAG	3 cut(s)	36, 60, 195
MalI	GATC	3 cut(s)	95, 474, 501
MboI	GATC	3 cut(s)	93, 472, 499
MboII	GAAGA	4 cut(s)	88, 305, 497, 509
MflI	RGATCY	2 cut(s)	93, 499
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	3 cut(s)	406, 530, 662
MnlI	CCTC	8 cut(s)	24, 184, 229, 256, 262, 307, 415, 513
Mph1103I	ATGCAT	1 cut(s)	604
MseI	TTAA	3 cut(s)	443, 672, 690
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	155, 608
NdeII	GATC	3 cut(s)	93, 472, 499
NlaIII	CATG	6 cut(s)	28, 67, 493, 602, 606, 640
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	2 cut(s)	67, 640
PaeI	GCATGC	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PctI	GAATGC	1 cut(s)	747
PinAI	ACCGGT	1 cut(s)	377
PkrI	GCNGC	6 cut(s)	148, 219, 222, 588, 646, 747
PspPI	GGNCC	1 cut(s)	486
PstNI	CAGNNNCTG	2 cut(s)	223, 398
PsuI	RGATCY	2 cut(s)	93, 499
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	443, 672, 690
SatI	GCNGC	6 cut(s)	147, 218, 221, 587, 645, 746
Sau3AI	GATC	3 cut(s)	93, 472, 499
Sau96I	GGNCC	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	4 cut(s)	133, 286, 502, 709
SfcI	CTRYAG	1 cut(s)	752
SinI	GGWCC	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	3 cut(s)	406, 530, 662
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	659
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	3 cut(s)	36, 60, 195
StuI	AGGCCT	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	400, 753
TaqI	TCGA	2 cut(s)	99, 309
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	3 cut(s)	406, 530, 662
Tru1I	TTAA	3 cut(s)	443, 672, 690
Tru9I	TTAA	3 cut(s)	443, 672, 690
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	6 cut(s)	146, 217, 220, 586, 644, 745
TspDTI	ATGAA	6 cut(s)	96, 192, 306, 342, 587, 728
TspRI	CASTG	1 cut(s)	280
VneI	GTGCAC	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	2 cut(s)	406, 530
XceI	RCATGY	2 cut(s)	67, 640
XspI	CTAG	3 cut(s)	36, 60, 195
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.