Prupe.1G039500_v2.0.a1

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
2820204 .. 2825272
5069 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G039500.2

Sequence Viewer

Length: 1632 bp
ATGACAGTAGGTGGACGTAGGATGGGATTGAGAAATGTGGCTTTCAAATCAAGGGAGGATCATCGGAAGCAGATTGAATTGGAGGAAGCACGTAAAGCTGGGTTAGCACCAGCTGAAGTTGATGAAGATGGGAAAGAGATTAATCCTCACATTCCTCAATATATGTCATCTGCGCCTTGGTATCTTAATGCTGAGAGACCAAGTTTAAAACATCAAAGGAAATGGAAATCCGATCCGAATTATACAAAATCCTGGTATGACAGAGGTGCAAAGATTTATCATGCGGATAAGTACCGGAAAGGAGCATGTGAAAACTGTGGGGCCATGACACATAGCGCTAAGTCCTGCATGGAGAGGCCTAGAAAGAAAGGAGCAAAGTGGACAAATTTTCACATTGCACCTGATGAAAAGATAGAGATGTTTGAGCTGGATTATGATGGAAAACGGGATAGATGGAATGGTTTTGATGCAGCAACTTATGCTCGTGTCATTGAGAGATACGAAGCAAGGGATGAGGCTAGAAGGAAATACCTGAAGGAGCAGCAGCTGAAAAAGTTGGAGGAGAAAAATAATAAGCAGAATGTGGAGGAGGAGGTTAGTGATGATGATGAGGATAATGATGCTCTGAAGGTTGATGAGGCCAAGGTTGATGAAAGCAAACAAATGGATTTTGCAAAGGTTGAGAAGCGTGTTCGAACAACTGGTGGTGGAAGCACTGGAACTGTCAGAAATTTGCGTATTCGGGAGGACACAGCTAAATATCTGTTAAACCTTGATGTCAATTCTGCTTATTATGATCCTAAAACCCGATCCATGCGTGAAGATCCTCTTCCTGATGCTGACCCGAATGAGAAGTTTTATGGAGGAGATAACCAATACAGAGTTAGTGGGCAAGCTCTAGAGTTCAAGAAACTTAATATTCATGCATGGGAGGCATTTGAAAAAGGACAAGACATCCACATGCAGGCTGCTCCATCTCAAGCAGAATTGCTGTATAAAAACTTTAAGGTCATTAAGGACAAATTGAAGTCACGAATGAAAGATGCCATCATGGAGAAGTATGGCAATTCTGCAACCGAAGAAGTACTTCCCAAGGAGCTTCTTTTGGGACAAAGTGAGAAACAAGTTGAATATGATCGTGCCGGCCGAGTTGTAAAGGGCATGGAGACTTCCCTTCCCAAAAGCAAGTATGAAGAGGATGTTTACATCAATAACCACACAAGTGTTTGGGGATCATGGTGGAAGGATCACCAATGGGGATACAAGTGTTGTAAGCAAACAATTCGGAACAGTTACTGCACTGGTGCAGCTGGAATTGAGGCTGCTGAGGAAGCAGCAGACCTAATGAAGGCGAATGTTGCCCGCAAAGCAGCCTCAGAAGAGATGCCTACTCCAACAGAAGGGAAAAGGCTTGCTACTTGGGGAACTGATATACCTGATGATTTGGTTCTTGACCAGAAAAAACTTGATGATGCTCTTAAGAAGGAGGATAAGAGAAGAAAGGAAGAGAAGGATGAAAGAAAGCGTAAATATAATGTTAAATGGGATGATGAGGTTACTCTTGAGGAGATGGAGGCATATCGGATGAAAAAGATACATAACGATGATCCCATGAAAGATTTTCTGCACTAA

Protein Analysis

544

Amino Acids

63.16

Weight (kDa)

7.19

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 284, 1363
AclWI GGATC 8 cut(s) 66, 227, 791, 804, 818, 1240, 1254, 1601
AcoI YGGCCR 1 cut(s) 1144
AcsI RAATTY 2 cut(s) 385, 730
AcuI CTGAAG 3 cut(s) 135, 554, 647
AfaI GTAC 2 cut(s) 293, 1086
AfeI AGCGCT 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 964, 1348, 1400
AflII CTTAAG 1 cut(s) 1478
AgsI TTSAA 6 cut(s) 46, 77, 907, 941, 1027, 1130
AjnI CCWGG 1 cut(s) 251
AleI CACNNNNGTG 1 cut(s) 1221
AluBI AGCT 8 cut(s) 98, 113, 427, 547, 755, 896, 1099, 1310
AluI AGCT 8 cut(s) 98, 113, 427, 547, 755, 896, 1099, 1310
Alw26I GTCTC 2 cut(s) 190, 1160
AlwI GGATC 8 cut(s) 66, 227, 791, 804, 818, 1240, 1254, 1601
AlwNI CAGNNNCTG 2 cut(s) 547, 1296
Aor51HI AGCGCT 1 cut(s) 337
AoxI GGCC 4 cut(s) 321, 356, 639, 1144
ApeKI GCWGC 8 cut(s) 470, 541, 544, 968, 1307, 1322, 1334, 1370
ApoI RAATTY 2 cut(s) 385, 730
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 1086
AspLEI GCGC 2 cut(s) 175, 338
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 1241
AsuII TTCGAA 1 cut(s) 694
BaeI ACNNNNGTAYC 2 cut(s) 1252, 1285
BauI CACGAG 1 cut(s) 483
BbvCI CCTCAGC 1 cut(s) 1326
BbvI GCAGC 8 cut(s) 482, 553, 556, 955, 1309, 1319, 1346, 1382
BccI CCATC 7 cut(s) 16, 122, 431, 447, 982, 1055, 1564
BcgI CGANNNNNNTGC 2 cut(s) 1265, 1299
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 1 cut(s) 1253
BcoDI GTCTC 2 cut(s) 190, 1160
BfaI CTAG 3 cut(s) 360, 519, 899
BfoI RGCGCY 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 1478
BfuI GTATCC 1 cut(s) 1253
BisI GCNGC 8 cut(s) 471, 542, 545, 969, 1308, 1323, 1335, 1371
BlsI GCNGC 8 cut(s) 472, 543, 546, 970, 1309, 1324, 1336, 1372
BmcAI AGTACT 1 cut(s) 1086
Bme1390I CCNGG 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 6 cut(s) 457, 610, 826, 1033, 1374, 1462
Bpu10I CCTNAGC 1 cut(s) 1326
Bpu14I TTCGAA 1 cut(s) 694
BpuEI CTTGAG 2 cut(s) 963, 1583
BsaAI YACGTR 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 3 cut(s) 176, 642, 1092
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 3 cut(s) 964, 1348, 1400
Bse118I RCCGGY 1 cut(s) 1142
Bse1I ACTGG 3 cut(s) 706, 721, 1306
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 3 cut(s) 176, 642, 1092
BseGI GGATG 7 cut(s) 27, 517, 954, 1204, 1519, 1552, 1590
BseLI CCNNNNNNNGG 3 cut(s) 964, 1348, 1400
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 3 cut(s) 183, 1317, 1389
BseNI ACTGG 3 cut(s) 706, 721, 1306
BseRI GAGGAG 5 cut(s) 575, 602, 605, 879, 1580
BseX3I CGGCCG 1 cut(s) 1144
BseXI GCAGC 8 cut(s) 482, 553, 556, 955, 1309, 1319, 1346, 1382
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 3 cut(s) 1282, 1326, 1610
Bsh1285I CGRYCG 1 cut(s) 1147
BshFI GGCC 4 cut(s) 323, 358, 641, 1146
BsiEI CGRYCG 1 cut(s) 1147
BsiSI CCGG 2 cut(s) 295, 1143
BslFI GGGAC 1 cut(s) 1122
BslI CCNNNNNNNGG 3 cut(s) 964, 1348, 1400
BsmAI GTCTC 2 cut(s) 190, 1160
BsmFI GGGAC 1 cut(s) 1122
BsnI GGCC 4 cut(s) 323, 358, 641, 1146
Bso31I GGTCTC 1 cut(s) 190
Bsp119I TTCGAA 1 cut(s) 694
Bsp143I GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
BspACI CCGC 2 cut(s) 284, 1363
BspANI GGCC 4 cut(s) 323, 358, 641, 1146
BspCNI CTCAG 3 cut(s) 184, 1318, 1388
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 8 cut(s) 66, 227, 791, 804, 818, 1240, 1254, 1601
BspT104I TTCGAA 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 1478
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 1142
BsrI ACTGG 3 cut(s) 706, 721, 1306
BssAI RCCGGY 1 cut(s) 1142
BssECI CCNNGG 3 cut(s) 176, 642, 1092
BssMI GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 3 cut(s) 176, 642, 1092
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 4 cut(s) 7, 317, 724, 1292
Bst6I CTCTTC 4 cut(s) 834, 1188, 1374, 1500
BstAFI CTTAAG 1 cut(s) 1478
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBAI YACGTR 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 5 cut(s) 894, 966, 1144, 1363, 1413
BstDEI CTNAG 4 cut(s) 192, 339, 1326, 1375
BstENI CCTNNNNNAGG 1 cut(s) 1346
BstF5I GGATG 7 cut(s) 27, 517, 954, 1204, 1519, 1552, 1590
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 175, 338
BstKTI GATC 9 cut(s) 61, 235, 799, 812, 826, 1138, 1235, 1249, 1609
BstMAI GTCTC 2 cut(s) 190, 1160
BstMBI GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
BstMCI CGRYCG 1 cut(s) 1147
BstMWI GCNNNNNNNGC 7 cut(s) 95, 104, 479, 932, 1331, 1358, 1367
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 309, 964
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 8 cut(s) 482, 553, 556, 955, 1309, 1319, 1346, 1382
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BstZI CGGCCG 1 cut(s) 1144
BsuI GTATCC 1 cut(s) 1253
BsuRI GGCC 4 cut(s) 323, 358, 641, 1146
BtsCI GGATG 7 cut(s) 27, 517, 954, 1204, 1519, 1552, 1590
BtsIMutI CAGTG 2 cut(s) 714, 1299
Cac8I GCNNGC 5 cut(s) 894, 966, 1144, 1363, 1413
CaiI CAGNNNCTG 2 cut(s) 547, 1296
CfoI GCGC 2 cut(s) 175, 338
Cfr10I RCCGGY 1 cut(s) 1142
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 292, 1085
CviQI GTAC 2 cut(s) 292, 1085
DdeI CTNAG 4 cut(s) 192, 339, 1326, 1375
DpnI GATC 9 cut(s) 60, 234, 798, 811, 825, 1137, 1234, 1248, 1608
DpnII GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
DraI TTTAAA 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 1144
EagI CGGCCG 1 cut(s) 1144
Eam1104I CTCTTC 4 cut(s) 834, 1188, 1374, 1500
EarI CTCTTC 4 cut(s) 834, 1188, 1374, 1500
EclXI CGGCCG 1 cut(s) 1144
Eco130I CCWWGG 3 cut(s) 176, 642, 1092
Eco147I AGGCCT 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 337
Eco52I CGGCCG 1 cut(s) 1144
Eco57I CTGAAG 3 cut(s) 135, 554, 647
EcoNI CCTNNNNNAGG 1 cut(s) 1346
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 3 cut(s) 176, 642, 1092
EcoT22I ATGCAT 1 cut(s) 928
ErhI CCWWGG 3 cut(s) 176, 642, 1092
FalI AAGNNNNNCTT 4 cut(s) 813, 845, 1071, 1103
FaqI GGGAC 1 cut(s) 1122
FauI CCCGC 1 cut(s) 1370
Fnu4HI GCNGC 8 cut(s) 471, 542, 545, 969, 1308, 1323, 1335, 1371
FokI GGATG 7 cut(s) 34, 524, 941, 1211, 1526, 1559, 1597
Fsp4HI GCNGC 8 cut(s) 471, 542, 545, 969, 1308, 1323, 1335, 1371
FspBI CTAG 3 cut(s) 360, 519, 899
GlaI GCGC 2 cut(s) 174, 337
GluI GCNGC 8 cut(s) 471, 542, 545, 969, 1308, 1323, 1335, 1371
GsaI CCCAGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 4 cut(s) 323, 358, 641, 1146
HapII CCGG 2 cut(s) 295, 1143
HhaI GCGC 2 cut(s) 175, 338
Hin6I GCGC 2 cut(s) 173, 336
HinP1I GCGC 2 cut(s) 173, 336
HpaII CCGG 2 cut(s) 295, 1143
HphI GGTGA 1 cut(s) 1241
Hpy166II GTNNAC 3 cut(s) 14, 381, 1204
Hpy188I TCNGA 8 cut(s) 66, 232, 237, 627, 728, 1287, 1378, 1584
Hpy188III TCNNGA 7 cut(s) 743, 833, 899, 907, 1032, 1451, 1562
Hpy8I GTNNAC 3 cut(s) 14, 381, 1204
HpyAV CCTTC 9 cut(s) 516, 529, 622, 1184, 1237, 1342, 1394, 1477, 1504
HpyCH4III ACNGT 4 cut(s) 7, 317, 724, 1292
HpyCH4IV ACGT 2 cut(s) 16, 91
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 104, 479, 932, 1331, 1358, 1367
HpyF3I CTNAG 4 cut(s) 192, 339, 1326, 1375
HpySE526I ACGT 2 cut(s) 16, 91
HspAI GCGC 2 cut(s) 173, 336
KroI GCCGGC 1 cut(s) 1142
KroNI GCCGGC 1 cut(s) 1144
Kzo9I GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
LmnI GCTCC 5 cut(s) 302, 371, 538, 976, 1096
Lsp1109I GCAGC 8 cut(s) 482, 553, 556, 955, 1309, 1319, 1346, 1382
LweI GCATC 6 cut(s) 457, 610, 826, 1033, 1374, 1462
MaeI CTAG 3 cut(s) 360, 519, 899
MaeII ACGT 2 cut(s) 16, 91
MaeIII GTNAC 3 cut(s) 1029, 1292, 1555
MalI GATC 9 cut(s) 60, 234, 798, 811, 825, 1137, 1234, 1248, 1608
MboI GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
MboII GAAGA 8 cut(s) 137, 821, 833, 1091, 1205, 1391, 1509, 1517
MflI RGATCY 1 cut(s) 823
MmeI TCCRAC 2 cut(s) 537, 1418
Mph1103I ATGCAT 1 cut(s) 928
MroNI GCCGGC 1 cut(s) 1142
MroXI GAANNNNTTC 1 cut(s) 1086
MseI TTAA 9 cut(s) 141, 186, 206, 767, 915, 1005, 1014, 1479, 1539
MslI CAYNNNNRTG 3 cut(s) 959, 1221, 1602
MspA1I CMGCKG 3 cut(s) 113, 547, 1310
MspCI CTTAAG 1 cut(s) 1478
MspI CCGG 2 cut(s) 295, 1143
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 7 cut(s) 95, 104, 479, 932, 1331, 1358, 1367
NaeI GCCGGC 1 cut(s) 1144
NdeII GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
NgoMIV GCCGGC 1 cut(s) 1142
NlaIV GGNNCC 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 1172
NmuCI GTSAC 1 cut(s) 1029
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 2 cut(s) 309, 964
NspV TTCGAA 1 cut(s) 694
OliI CACNNNNGTG 1 cut(s) 1221
PceI AGGCCT 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 1144
PdiI GCCGGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 1086
PkrI GCNGC 8 cut(s) 472, 543, 546, 970, 1309, 1324, 1336, 1372
Ppu21I YACGTR 1 cut(s) 92
PshBI ATTAAT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 321
PstNI CAGNNNCTG 2 cut(s) 547, 1296
PsuI RGATCY 1 cut(s) 823
PvuII CAGCTG 3 cut(s) 113, 547, 1310
RsaI GTAC 2 cut(s) 293, 1086
RsaNI GTAC 2 cut(s) 292, 1085
RseI CAYNNNNRTG 3 cut(s) 959, 1221, 1602
SaqAI TTAA 9 cut(s) 141, 186, 206, 767, 915, 1005, 1014, 1479, 1539
SatI GCNGC 8 cut(s) 471, 542, 545, 969, 1308, 1323, 1335, 1371
Sau3AI GATC 9 cut(s) 58, 232, 796, 809, 823, 1135, 1232, 1246, 1606
Sau96I GGNCC 1 cut(s) 321
ScaI AGTACT 1 cut(s) 1086
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 6 cut(s) 457, 610, 826, 1033, 1374, 1462
SfuI TTCGAA 1 cut(s) 694
SmiMI CAYNNNNRTG 3 cut(s) 959, 1221, 1602
SmlI CTYRAG 3 cut(s) 978, 1478, 1562
SmoI CTYRAG 3 cut(s) 978, 1478, 1562
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 2 cut(s) 284, 1363
SspI AATATT 1 cut(s) 919
SspMI CTAG 3 cut(s) 360, 519, 899
StuI AGGCCT 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 3 cut(s) 176, 642, 1092
TaaI ACNGT 4 cut(s) 7, 317, 724, 1292
TaiI ACGT 2 cut(s) 19, 94
TaqI TCGA 1 cut(s) 694
TatI WGTACW 1 cut(s) 1084
Tru1I TTAA 9 cut(s) 141, 186, 206, 767, 915, 1005, 1014, 1479, 1539
Tru9I TTAA 9 cut(s) 141, 186, 206, 767, 915, 1005, 1014, 1479, 1539
TscAI CASTG 2 cut(s) 721, 1306
TseFI GTSAC 1 cut(s) 1029
TseI GCWGC 8 cut(s) 470, 541, 544, 968, 1307, 1322, 1334, 1370
Tsp45I GTSAC 1 cut(s) 1029
TspRI CASTG 2 cut(s) 721, 1306
Vha464I CTTAAG 1 cut(s) 1478
VspI ATTAAT 1 cut(s) 141
XagI CCTNNNNNAGG 1 cut(s) 1346
XapI RAATTY 2 cut(s) 385, 730
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 2 cut(s) 309, 964
XmnI GAANNNNTTC 1 cut(s) 1086
XspI CTAG 3 cut(s) 360, 519, 899
ZrmI AGTACT 1 cut(s) 1086
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.