Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001496

Physical Location & Seq

Genomic Coordinates Reverse (-)

541798 .. 542893

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0002800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTGGAGAAGGACTTCCGCATCCAAGAAAAGGCGGACAATAGGTTCCTCTTCTCCTTTGATTTGATCAGGGATCGGAACAAGGTGCTTAAGGGTGGTGTTTGGTGCTATGACCGGGCTCCGGTCTGTCTGGAGGAGTATGATGGTATCACCCCCATCGCTGATGTCCCTCTGAAGTATGTAAGGATATGGGTTAGGGTTTCGGGTATCCCTCCCCTCTACGAGGAACCCAACAACCTCATTCTCATTGGAAACCTTCTGGGCGGCTATTTGGATTATGATAAGAGAGAGTTTCGCAAAGGTGTTGTGCGCATCTTCTTCAAATATGATATTTCAAAGCCAGTTCTTCTAGAGCGTAGGGTTTTCTTGGCCCCTGGTGTAGAGCCCTTTCTTCAGTTCCAATTCGAACATCTTAAGGGTAGATGTCCTCAGTGTGGTATGATCACGCATTCTGGGGCGAAGTGTGAGGAGGTTGTGGCTCTTTCTGATCCTAGGGTTGTGAATTTTGGTGGCGGCCCTTCTTCCTCGGGCGGCACTTTTGCTTTCTCTGCCAAGAATCCCCGTGAGTTATCTATGCCTTCTTCCTCCCTGTTGAAAAAGAAGAAGCCCGTTATTCGACGTCTAGAGCGTTCCACCATTGAACCTACGGGTCCTGAAGGTACCGTGCTCAACACGGCAGATTTGGAAGGCACGAATCATGAGGGTGCTTTACCGGACATGGCTATTGAGGTATCCTCGGTGGAACCTTCTGATTCAGGAACAAAGGATCTTCCACCGGCCTCCATCATGCAAGTTGCTCTTGGTTTGACTGAAGTTGAGGATGATGTCGCGCTTGTGACACTGAAGAAGAAGTTGGGCAGGCCACTTGGTAGCAAAAACAAGGGCTCCCGGCCTCACAGGAAGGTGGGATTGACCCCTTTGCGTCTTACGTATCCGGCTGCTACTACTACTCAGGAGATTGGCCCTAAAGCTAAGGGCAAGGGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

330

Amino Acids

36.45

Weight (kDa)

9.21

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	110 - 156	9.2e-09	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65660 AT3G45950 AT4G37120
fragaria_vesca	FvH4_2g21480 FvH4_4g03640 FvH4_5g13320
malus_domestica	MD05G1197300.v1.1 MD10G1184000.v1.1 MD16G1219100.v1.1
prunus_persica	Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.8G223800_v2.0.a1
pyrus_communis	pycom05g18440 pycom10g15930 pycom16g18260
rosa_chinensis	RchiOBHm_Chr4g0393021 RchiOBHm_Chr6g0288131 RchiOBHm_Chr7g0183821
rosa_laevigata	RLG00000005020 RLG00000009774
rosa_multiflora	Rmu_sc0003610.1_g000043 Rmu_sc0010766.1_g000006 Rmu_sc0034700.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270180 Rroxscaffold_5G00338120 Rroxscaffold_7G00180470
rosa_rugosa	Rorug04G0002700 Rorug04G0002800 Rorug06G0194300 Rorug06G0460700 Rorug06G0460800
rosa_samantha	Rh4AG045400 Rh4BG041400 Rh4CG049000 Rh4DG043300 Rh6AG304700 Rh6BG310700 Rh6CG318800 Rh6DG303700 Rh7AG061400 Rh7BG061500 Rh7CG063100 Rh7DG061500
rosa_wichuraiana	Rw4G003580 Rw6G026360 Rw7G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	622
Acc16I	TGCGCA	1 cut(s)	311
Acc65I	GGTACC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	659
AccII	CGCG	1 cut(s)	830
AciI	CCGC	5 cut(s)	19, 35, 264, 513, 531
AclWI	GGATC	3 cut(s)	81, 482, 774
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	5 cut(s)	194, 377, 675, 831, 863
AcyI	GRCGYC	1 cut(s)	619
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	4 cut(s)	31, 121, 223, 434
AflII	CTTAAG	2 cut(s)	89, 413
AgsI	TTSAA	4 cut(s)	322, 336, 595, 641
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	971
AluI	AGCT	1 cut(s)	971
Alw21I	GWGCWC	1 cut(s)	669
AlwI	GGATC	3 cut(s)	81, 482, 774
Ama87I	CYCGRG	1 cut(s)	526
AoxI	GGCC	6 cut(s)	369, 514, 777, 860, 890, 961
ApeKI	GCWGC	1 cut(s)	938
ApoI	RAATTY	1 cut(s)	502
Asp700I	GAANNNNTTC	1 cut(s)	14
Asp718I	GGTACC	1 cut(s)	659
AspA2I	CCTAGG	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	312, 832
AspS9I	GGNCC	4 cut(s)	370, 515, 650, 962
AsuC2I	CCSGG	2 cut(s)	116, 889
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	650
AvrII	CCTAGG	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	3 cut(s)	121, 387, 887
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	925
BccI	CCATC	3 cut(s)	137, 164, 791
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	1 cut(s)	375
BciVI	GTATCC	3 cut(s)	218, 742, 942
BclI	TGATCA	2 cut(s)	66, 441
BcnI	CCSGG	2 cut(s)	116, 889
BfaI	CTAG	3 cut(s)	350, 492, 623
BfrI	CTTAAG	2 cut(s)	89, 413
BfuI	GTATCC	3 cut(s)	218, 742, 942
BisI	GCNGC	4 cut(s)	265, 514, 532, 939
BlnI	CCTAGG	1 cut(s)	491
BlsI	GCNGC	4 cut(s)	266, 515, 533, 940
Bme1390I	CCNGG	3 cut(s)	116, 375, 889
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	1 cut(s)	526
BmgT120I	GGNCC	4 cut(s)	370, 515, 650, 962
BmiI	GGNNCC	8 cut(s)	47, 120, 228, 372, 651, 661, 744, 886
BmrFI	CCNGG	3 cut(s)	116, 375, 889
BmsI	GCATC	2 cut(s)	30, 321
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	972
Bpu14I	TTCGAA	1 cut(s)	405
BpuMI	CCSGG	2 cut(s)	116, 889
BsaAI	YACGTR	1 cut(s)	930
BsaHI	GRCGYC	1 cut(s)	619
BsaJI	CCNNGG	4 cut(s)	373, 491, 525, 735
BsaWI	WCCGGW	2 cut(s)	121, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 121, 223, 434
Bse118I	RCCGGY	1 cut(s)	775
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	4 cut(s)	373, 491, 525, 735
BseGI	GGATG	2 cut(s)	21, 826
BseLI	CCNNNNNNNGG	4 cut(s)	31, 121, 223, 434
BseMII	CTCAG	2 cut(s)	443, 965
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	149, 482
BseXI	GCAGC	1 cut(s)	925
Bsh1236I	CGCG	1 cut(s)	830
BshFI	GGCC	6 cut(s)	371, 516, 779, 862, 892, 963
BshNI	GGYRCC	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	526
BsiSI	CCGG	6 cut(s)	115, 122, 713, 776, 889, 935
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	4 cut(s)	31, 121, 223, 434
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	6 cut(s)	371, 516, 779, 862, 892, 963
BsoBI	CYCGRG	1 cut(s)	526
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	4 cut(s)	121, 387, 669, 887
Bsp143I	GATC	5 cut(s)	66, 73, 441, 487, 766
BspACI	CCGC	5 cut(s)	19, 35, 264, 513, 531
BspANI	GGCC	6 cut(s)	371, 516, 779, 862, 892, 963
BspCNI	CTCAG	2 cut(s)	442, 964
BspFNI	CGCG	1 cut(s)	830
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	8 cut(s)	47, 120, 228, 372, 651, 661, 744, 886
BspPI	GGATC	3 cut(s)	81, 482, 774
BspT104I	TTCGAA	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	659
BspTI	CTTAAG	2 cut(s)	89, 413
BsrFI	RCCGGY	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	775
BssECI	CCNNGG	4 cut(s)	373, 491, 525, 735
BssMI	GATC	5 cut(s)	66, 73, 441, 487, 766
BssNI	GRCGYC	1 cut(s)	619
BssT1I	CCWWGG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	664
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	619
BstAFI	CTTAAG	2 cut(s)	89, 413
BstBAI	YACGTR	1 cut(s)	930
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	860
BstDEI	CTNAG	3 cut(s)	429, 951, 972
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	21, 826
BstFNI	CGCG	1 cut(s)	830
BstHHI	GCGC	2 cut(s)	312, 832
BstKTI	GATC	5 cut(s)	69, 76, 444, 490, 769
BstMBI	GATC	5 cut(s)	66, 73, 441, 487, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	3 cut(s)	114, 373, 887
BstSNI	TACGTA	1 cut(s)	930
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	1 cut(s)	925
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BsuI	GTATCC	3 cut(s)	218, 742, 942
BsuRI	GGCC	6 cut(s)	371, 516, 779, 862, 892, 963
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	21, 826
BtsIMutI	CAGTG	2 cut(s)	437, 839
Cac8I	GCNNGC	1 cut(s)	860
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	2 cut(s)	312, 832
Cfr10I	RCCGGY	1 cut(s)	775
Cfr13I	GGNCC	4 cut(s)	370, 515, 650, 962
CseI	GACGC	1 cut(s)	911
Csp6I	GTAC	1 cut(s)	660
CviAII	CATG	3 cut(s)	698, 718, 787
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	3 cut(s)	429, 951, 972
DpnI	GATC	5 cut(s)	68, 75, 443, 489, 768
DpnII	GATC	5 cut(s)	66, 73, 441, 487, 766
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	930
Eco130I	CCWWGG	1 cut(s)	491
Eco24I	GRGCYC	3 cut(s)	121, 387, 887
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	5 cut(s)	194, 377, 675, 831, 863
Eco88I	CYCGRG	1 cut(s)	526
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	491
EcoT38I	GRGCYC	3 cut(s)	121, 387, 887
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	3 cut(s)	701, 721, 790
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	697, 717, 786
FbaI	TGATCA	2 cut(s)	66, 441
Fnu4HI	GCNGC	4 cut(s)	265, 514, 532, 939
FokI	GGATG	2 cut(s)	8, 833
FriOI	GRGCYC	3 cut(s)	121, 387, 887
Fsp4HI	GCNGC	4 cut(s)	265, 514, 532, 939
FspAI	RTGCGCAY	1 cut(s)	311
FspBI	CTAG	3 cut(s)	350, 492, 623
FspI	TGCGCA	1 cut(s)	311
GlaI	GCGC	2 cut(s)	311, 831
GluI	GCNGC	4 cut(s)	265, 514, 532, 939
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	6 cut(s)	371, 516, 779, 862, 892, 963
HapII	CCGG	6 cut(s)	115, 122, 713, 776, 889, 935
HgaI	GACGC	1 cut(s)	911
HhaI	GCGC	2 cut(s)	312, 832
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	3 cut(s)	701, 721, 790
Hin6I	GCGC	2 cut(s)	310, 830
HinP1I	GCGC	2 cut(s)	310, 830
HinfI	GANTC	3 cut(s)	556, 694, 752
HpaII	CCGG	6 cut(s)	115, 122, 713, 776, 889, 935
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	78, 174, 487, 751
Hpy188III	TCNNGA	7 cut(s)	131, 350, 623, 653, 698, 756, 953
Hpy99I	CGWCG	1 cut(s)	621
HpyAV	CCTTC	8 cut(s)	4, 266, 528, 588, 650, 680, 756, 895
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	2 cut(s)	619, 929
HpyCH4V	TGCA	1 cut(s)	790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	3 cut(s)	429, 951, 972
HpySE526I	ACGT	2 cut(s)	619, 929
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	701, 721, 790
HspAI	GCGC	2 cut(s)	310, 830
KpnI	GGTACC	1 cut(s)	663
Ksp22I	TGATCA	2 cut(s)	66, 441
Kzo9I	GATC	5 cut(s)	66, 73, 441, 487, 766
LmnI	GCTCC	2 cut(s)	124, 890
Lsp1109I	GCAGC	1 cut(s)	925
LweI	GCATC	2 cut(s)	30, 321
MaeI	CTAG	3 cut(s)	350, 492, 623
MaeII	ACGT	2 cut(s)	619, 929
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	5 cut(s)	68, 75, 443, 489, 768
MboI	GATC	5 cut(s)	66, 73, 441, 487, 766
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	4 cut(s)	121, 387, 669, 887
MluCI	AATT	2 cut(s)	401, 502
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	90, 414
MslI	CAYNNNNRTG	1 cut(s)	702
MspCI	CTTAAG	2 cut(s)	89, 413
MspI	CCGG	6 cut(s)	115, 122, 713, 776, 889, 935
MspR9I	CCNGG	3 cut(s)	116, 375, 889
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	1 cut(s)	548
NciI	CCSGG	2 cut(s)	116, 889
NdeII	GATC	5 cut(s)	66, 73, 441, 487, 766
NlaIII	CATG	3 cut(s)	701, 721, 790
NlaIV	GGNNCC	8 cut(s)	47, 120, 228, 372, 651, 661, 744, 886
NmuCI	GTSAC	1 cut(s)	835
NsbI	TGCGCA	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	405
PagI	TCATGA	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	625
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	556, 694, 752
PkrI	GCNGC	4 cut(s)	266, 515, 533, 940
Ppu21I	YACGTR	1 cut(s)	930
PpuMI	RGGWCCY	1 cut(s)	650
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	8 cut(s)	47, 120, 228, 372, 651, 661, 744, 886
PspPI	GGNCC	4 cut(s)	370, 515, 650, 962
PspPPI	RGGWCCY	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	90, 414
SatI	GCNGC	4 cut(s)	265, 514, 532, 939
Sau3AI	GATC	5 cut(s)	66, 73, 441, 487, 766
Sau96I	GGNCC	4 cut(s)	370, 515, 650, 962
ScrFI	CCNGG	3 cut(s)	116, 375, 889
SduI	GDGCHC	4 cut(s)	121, 387, 669, 887
SfaNI	GCATC	2 cut(s)	30, 321
SfuI	TTCGAA	1 cut(s)	405
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	89, 413
SmoI	CTYRAG	2 cut(s)	89, 413
SnaBI	TACGTA	1 cut(s)	930
Sse9I	AATT	2 cut(s)	401, 502
SsiI	CCGC	5 cut(s)	19, 35, 264, 513, 531
SspMI	CTAG	3 cut(s)	350, 492, 623
StyD4I	CCNGG	3 cut(s)	114, 373, 887
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	2 cut(s)	622, 932
TaqI	TCGA	2 cut(s)	405, 616
TasI	AATT	2 cut(s)	401, 502
TauI	GCSGC	3 cut(s)	267, 516, 534
TfiI	GAWTC	3 cut(s)	556, 694, 752
Tru1I	TTAA	2 cut(s)	90, 414
Tru9I	TTAA	2 cut(s)	90, 414
TscAI	CASTG	2 cut(s)	437, 846
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	1 cut(s)	938
Tsp45I	GTSAC	1 cut(s)	835
TspRI	CASTG	2 cut(s)	437, 846
Vha464I	CTTAAG	2 cut(s)	89, 413
VpaK11BI	GGWCC	1 cut(s)	650
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	502
XbaI	TCTAGA	2 cut(s)	349, 622
XmaJI	CCTAGG	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	3 cut(s)	350, 492, 623
ZraI	GACGTC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.