Rorug06G0194300

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001496
Physical Location & Seq
Forward (+)
31355096 .. 31355920
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0194300.1

Sequence Viewer

Length: 825 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAGGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCTATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCTGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAGGCTTAGCATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

274

Amino Acids

29.99

Weight (kDa)

6.52

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 7.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 413
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 1 cut(s) 743
AclI AACGTT 1 cut(s) 764
AclWI GGATC 9 cut(s) 118, 131, 141, 330, 343, 391, 411, 424, 459
AcsI RAATTY 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 2 cut(s) 328, 571
AfiI CCNNNNNNNGG 3 cut(s) 329, 413, 664
AgsI TTSAA 2 cut(s) 556, 640
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 3 cut(s) 92, 322, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 5 cut(s) 7, 199, 410, 777, 799
AluI AGCT 5 cut(s) 7, 199, 410, 777, 799
Alw21I GWGCWC 2 cut(s) 665, 779
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 9 cut(s) 118, 131, 141, 330, 343, 391, 411, 424, 459
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 4 cut(s) 50, 199, 293, 799
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
AseI ATTAAT 1 cut(s) 471
Asp700I GAANNNNTTC 3 cut(s) 316, 513, 644
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
AxyI CCTNAGG 1 cut(s) 128
BaeGI GKGCMC 2 cut(s) 306, 665
BamHI GGATCC 3 cut(s) 123, 335, 416
BanII GRGCYC 2 cut(s) 262, 779
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 697
Bbv12I GWGCWC 2 cut(s) 665, 779
BbvI GCAGC 4 cut(s) 62, 186, 280, 786
BccI CCATC 3 cut(s) 26, 452, 798
BceAI ACGGC 2 cut(s) 72, 681
BciT130I CCWGG 3 cut(s) 94, 324, 631
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 3 cut(s) 315, 444, 807
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 4 cut(s) 51, 200, 294, 800
BlpI GCTNAGC 2 cut(s) 778, 812
BlsI GCNGC 4 cut(s) 52, 201, 295, 801
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 631
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 8 cut(s) 102, 125, 245, 337, 358, 418, 439, 487
BmrFI CCNGG 4 cut(s) 55, 94, 324, 631
BpiI GAAGAC 1 cut(s) 697
BpmI CTGGAG 2 cut(s) 93, 179
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 2 cut(s) 778, 812
BpuEI CTTGAG 2 cut(s) 282, 793
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 413, 664
Bse1I ACTGG 5 cut(s) 334, 367, 376, 505, 567
Bse21I CCTNAGG 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 3 cut(s) 94, 324, 631
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 3 cut(s) 37, 601, 790
BseLI CCNNNNNNNGG 3 cut(s) 329, 413, 664
BseMII CTCAG 4 cut(s) 142, 692, 752, 792
BseNI ACTGG 5 cut(s) 334, 367, 376, 505, 567
BseRI GAGGAG 2 cut(s) 632, 635
BseSI GKGCMC 2 cut(s) 306, 665
BseXI GCAGC 4 cut(s) 62, 186, 280, 786
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 665, 779
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 794
BslI CCNNNNNNNGG 3 cut(s) 329, 413, 664
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 262, 306, 665, 779
Bsp13I TCCGGA 1 cut(s) 793
Bsp1720I GCTNAGC 2 cut(s) 778, 812
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 4 cut(s) 141, 693, 751, 791
BspEI TCCGGA 1 cut(s) 793
BspLI GGNNCC 8 cut(s) 102, 125, 245, 337, 358, 418, 439, 487
BspPI GGATC 9 cut(s) 118, 131, 141, 330, 343, 391, 411, 424, 459
BsrI ACTGG 5 cut(s) 334, 367, 376, 505, 567
BssECI CCNNGG 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 631
Bst4CI ACNGT 2 cut(s) 207, 754
Bst6I CTCTTC 2 cut(s) 272, 650
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 5 cut(s) 128, 701, 738, 778, 812
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 3 cut(s) 37, 601, 790
BstHHI GCGC 1 cut(s) 715
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 808
BstNI CCWGG 3 cut(s) 94, 324, 631
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 4 cut(s) 53, 92, 322, 629
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 306, 665
BstV1I GCAGC 4 cut(s) 62, 186, 280, 786
BstV2I GAAGAC 1 cut(s) 697
BstX2I RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
BstYI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 37, 601, 790
BtsIMutI CAGTG 2 cut(s) 360, 759
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 357, 404, 438
Csp6I GTAC 2 cut(s) 327, 570
CviAII CATG 1 cut(s) 307
CviQI GTAC 2 cut(s) 327, 570
DdeI CTNAG 5 cut(s) 128, 701, 738, 778, 812
DraI TTTAAA 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 272, 650
EarI CTCTTC 2 cut(s) 272, 650
Ecl136II GAGCTC 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 779
Eco47I GGWCC 2 cut(s) 357, 438
Eco53kI GAGCTC 1 cut(s) 777
Eco81I CCTNAGG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 777
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 3 cut(s) 92, 322, 629
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 779
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 310
FaiI YATR 5 cut(s) 210, 308, 538, 818, 823
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 51, 200, 294, 800
FokI GGATG 3 cut(s) 44, 588, 777
FriOI GRGCYC 2 cut(s) 262, 779
Fsp4HI GCNGC 4 cut(s) 51, 200, 294, 800
FspBI CTAG 3 cut(s) 315, 444, 807
GlaI GCGC 1 cut(s) 714
GluI GCNGC 4 cut(s) 51, 200, 294, 800
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 93, 179
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 54, 794
HhaI GCGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HinfI GANTC 2 cut(s) 178, 494
HpaII CCGG 2 cut(s) 54, 794
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 3 cut(s) 360, 441, 663
Hpy188I TCNGA 1 cut(s) 702
Hpy188III TCNNGA 7 cut(s) 110, 182, 247, 263, 518, 772, 794
Hpy8I GTNNAC 3 cut(s) 360, 441, 663
HpyAV CCTTC 2 cut(s) 503, 700
HpyCH4III ACNGT 2 cut(s) 207, 754
HpyCH4IV ACGT 3 cut(s) 252, 674, 764
HpyCH4V TGCA 4 cut(s) 202, 285, 609, 663
HpyF10VI GCNNNNNNNGC 1 cut(s) 808
HpyF3I CTNAG 5 cut(s) 128, 701, 738, 778, 812
HpySE526I ACGT 3 cut(s) 252, 674, 764
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 1 cut(s) 713
Kpn2I TCCGGA 1 cut(s) 793
LmnI GCTCC 2 cut(s) 4, 796
Lsp1109I GCAGC 4 cut(s) 62, 186, 280, 786
MaeI CTAG 3 cut(s) 315, 444, 807
MaeII ACGT 3 cut(s) 252, 674, 764
MaeIII GTNAC 3 cut(s) 682, 721, 745
MboII GAAGA 4 cut(s) 289, 534, 637, 702
MflI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
MhlI GDGCHC 4 cut(s) 262, 306, 665, 779
MluCI AATT 4 cut(s) 349, 397, 430, 526
MroI TCCGGA 1 cut(s) 793
MroXI GAANNNNTTC 3 cut(s) 316, 513, 644
MseI TTAA 3 cut(s) 156, 471, 524
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 2 cut(s) 54, 794
MspR9I CCNGG 4 cut(s) 55, 94, 324, 631
MvaI CCWGG 3 cut(s) 94, 324, 631
MwoI GCNNNNNNNGC 1 cut(s) 808
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 8 cut(s) 102, 125, 245, 337, 358, 418, 439, 487
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 3 cut(s) 316, 513, 644
PfeI GAWTC 2 cut(s) 178, 494
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 4 cut(s) 52, 201, 295, 801
PshBI ATTAAT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 779
Psp1406I AACGTT 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 92, 322, 629
PspEI GGTNACC 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 629
PspN4I GGNNCC 8 cut(s) 102, 125, 245, 337, 358, 418, 439, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 2 cut(s) 328, 571
RsaNI GTAC 2 cut(s) 327, 570
SacI GAGCTC 1 cut(s) 779
SaqAI TTAA 3 cut(s) 156, 471, 524
SatI GCNGC 4 cut(s) 51, 200, 294, 800
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 4 cut(s) 55, 94, 324, 631
SduI GDGCHC 4 cut(s) 262, 306, 665, 779
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 525
SmlI CTYRAG 3 cut(s) 261, 297, 772
SmoI CTYRAG 3 cut(s) 261, 297, 772
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 4 cut(s) 349, 397, 430, 526
SsiI CCGC 1 cut(s) 743
SspMI CTAG 3 cut(s) 315, 444, 807
SstI GAGCTC 1 cut(s) 779
StyD4I CCNGG 4 cut(s) 53, 92, 322, 629
StyI CCWWGG 1 cut(s) 306
SwaI ATTTAAAT 1 cut(s) 525
TaaI ACNGT 2 cut(s) 207, 754
TaiI ACGT 3 cut(s) 255, 677, 767
TaqI TCGA 3 cut(s) 27, 262, 390
TasI AATT 4 cut(s) 349, 397, 430, 526
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 2 cut(s) 178, 494
Tru1I TTAA 3 cut(s) 156, 471, 524
Tru9I TTAA 3 cut(s) 156, 471, 524
TscAI CASTG 2 cut(s) 367, 759
TseI GCWGC 4 cut(s) 50, 199, 293, 799
TspDTI ATGAA 3 cut(s) 290, 522, 525
TspRI CASTG 2 cut(s) 367, 759
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 357, 438
VspI ATTAAT 1 cut(s) 471
XapI RAATTY 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 3 cut(s) 316, 513, 644
XspI CTAG 3 cut(s) 315, 444, 807
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.