FvH4_2g21480

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001496
Physical Location & Seq
Reverse (-)
17844941 .. 17849220
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21480.t1

Sequence Viewer

Length: 1623 bp
ATGGCGACGGCGTCAGTGGCATTCAAATCAAGGGAAGATCATCGTAAGCAAATTGAATTGGAAGAAGCCCGAAAGGCTGGGCTCGCACCAGCTGAGCTCGATGAGGATGGAAAGGAGATCAATCCTCATATTCCTCAGTATATGTCCTCTGCACCTTGGTATCTCAATGCTGAAAGACCTAGCTTGAAACATCAAAGGAAATGGAAAACAGATCCAGATTACACAAAATCGTGGTACGACAGAGGTGCAAAGATTGGCCAGGCTGATAAATATAGGAAGGGTGCATGCCAGAATTGTGGAGCTATGTCACATGATGTCAAGTCTTGTATGGAAAGACCCAGGAAAGTGGGAGCAAAGTATACAAACAAACACATTGCTCCTGATGAGAAGGTAGAGACTTTTGAGCTCGACTATGATGGAAAACGGGACCGCTGGAATGGATATGATGCATCATCTTATGCTCTAGTCATCGAGAGATACGAATCAAGAGATGAAGCACGAAGGAAATTCTTAAAAGAACAACAACTTAAAAAATTGGAGGAGAAAAATAATAACCAAAATGGTGAAGAAGCAGTTAGTGAAGAGGACGAAGAGGAGGCTGAGGACGAGGATGATCTGAGGGTGGATGAAGCCAAGGTTGATGAGAGCAAACAAATGGACTTTGCAAAGGTGGAGAAGCGTGTTCGTACAACAGGTGGTGGGAGCACAGGAACTGTCAGGAATTTGCGTATTCGTGAGGATACTGCAAAATATCTTTTAAACCTTGACGTCAACTCTGCACATTATGATCCCAAAACCCGTTCCATGCGTGAGGATCCTCTTCCAGATGCTGATCCAAATGAGAAATTTTACGCGGGTGATAACAGATATAGAAATAGTGGTCAAGCTATGGAGTTCAAGCAGTTGAACATTCATGCCTGGGAAGCATTTGACAAGGGACAAGACATTCACATGCAAGCAGCCCCATCCCAGGCTGAATTACTGTATAAGAACTATAAGGTAATTAAGGAGAATTTGAAGTCGCACACAAAGGAGACCATTTTAGAGAAGTATGGCAACGCAGCTAGTGAAGAAGCGATTCCTAGGGAGCTTTTACTGGGACAAAGTGAAAGAGAAGTCGAATATGATCGTGCTGGAAGGATTATCAAAGGACAGGAAACCACACTTCCCAGAAGCAAGTATGAAGAAGATGTTTATATCAACAACCACACCTGTGTATGGGGTTCATGGTGGAAGGATCATCAATGGGGATACAGATGTTGTCAGCAGTTTACTCGAAACAGCTATTGCACAGGTGCTGCTGGAATAGAGGCTGCCGAGGCTGCAACTGATCTGATGAAGGCTAACATTGCTCGTAAAGAGGCTGTTGGAGAAATGCCTCCTCCTGCGGAGGAGAAAAGACCTGCCACTTGGGGAACTGACATCCCAGAAGATCTGGTTTTAGATGAGAAATTACTTGCTGAAGCTCTTAAAAAAGAGGATGCAAGAAGGAAAGAAGAGAGAGATGAGAGAAAACGCAAATACAATGTCAGATGGAATGATGACGTTACTGCTGAGGATATGGAGGCATACAGGATGAAGAAAGTTCACCATGATGATCCAATGAAGGAGTTTCTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

541

Amino Acids

62.64

Weight (kDa)

5.58

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 136 - 409 8.2e-96 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 771
Acc36I ACCTGC 1 cut(s) 1411
AccI GTMKAC 1 cut(s) 359
AccII CGCG 1 cut(s) 854
AciI CCGC 3 cut(s) 430, 854, 1388
AclWI GGATC 7 cut(s) 206, 782, 809, 822, 827, 1245, 1592
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 4 cut(s) 506, 721, 845, 1012
AcuI CTGAAG 1 cut(s) 1482
AcyI GRCGYC 2 cut(s) 11, 768
AfaI GTAC 2 cut(s) 236, 688
AfiI CCNNNNNNNGG 2 cut(s) 970, 1218
AgsI TTSAA 6 cut(s) 25, 56, 187, 898, 907, 1018
AjnI CCWGG 4 cut(s) 258, 338, 917, 969
AleI CACNNNNGTG 1 cut(s) 1212
Alw21I GWGCWC 3 cut(s) 99, 408, 707
Alw26I GTCTC 2 cut(s) 389, 1028
AlwI GGATC 7 cut(s) 206, 782, 809, 822, 827, 1245, 1592
AlwNI CAGNNNCTG 3 cut(s) 713, 830, 1298
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 5 cut(s) 959, 1061, 1298, 1313, 1322
ApoI RAATTY 4 cut(s) 506, 721, 845, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 1512, 1544
Asp700I GAANNNNTTC 1 cut(s) 1077
AspA2I CCTAGG 1 cut(s) 1082
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 575, 869, 1580
AvaII GGWCC 1 cut(s) 427
AvrII CCTAGG 1 cut(s) 1082
BaeI ACNNNNGTAYC 4 cut(s) 143, 176, 1243, 1276
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 1 cut(s) 814
BanII GRGCYC 3 cut(s) 84, 99, 408
Bbv12I GWGCWC 3 cut(s) 99, 408, 707
BbvCI CCTCAGC 2 cut(s) 600, 1554
BbvI GCAGC 5 cut(s) 971, 1073, 1285, 1300, 1309
BccI CCATC 4 cut(s) 101, 410, 973, 1527
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 4 cut(s) 227, 261, 1256, 1290
BciT130I CCWGG 4 cut(s) 260, 340, 919, 971
BciVI GTATCC 2 cut(s) 733, 1244
BcoDI GTCTC 2 cut(s) 389, 1028
BfaI CTAG 4 cut(s) 180, 464, 1065, 1083
BfuAI ACCTGC 1 cut(s) 1411
BfuI GTATCC 2 cut(s) 733, 1244
BglI GCCNNNNNGGC 1 cut(s) 74
BglII AGATCT 1 cut(s) 1432
BisI GCNGC 5 cut(s) 960, 1062, 1299, 1314, 1323
BlnI CCTAGG 1 cut(s) 1082
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 5 cut(s) 961, 1063, 1300, 1315, 1324
Bme1390I CCNGG 4 cut(s) 260, 340, 919, 971
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 428, 816
BmrFI CCNGG 4 cut(s) 260, 340, 919, 971
BmrI ACTGGG 1 cut(s) 1106
BmsI GCATC 4 cut(s) 436, 458, 817, 1471
BmuI ACTGGG 1 cut(s) 1106
Bpu10I CCTNAGC 2 cut(s) 600, 1554
Bpu1102I GCTNAGC 1 cut(s) 93
BsaBI GATNNNNATC 2 cut(s) 481, 831
BsaHI GRCGYC 2 cut(s) 11, 768
BsaI GGTCTC 1 cut(s) 1028
BsaJI CCNNGG 7 cut(s) 155, 338, 633, 918, 969, 1082, 1317
Bsc4I CCNNNNNNNGG 2 cut(s) 970, 1218
Bse1I ACTGG 1 cut(s) 1101
Bse3DI GCAATG 2 cut(s) 372, 1347
Bse8I GATNNNNATC 2 cut(s) 481, 831
BseBI CCWGG 4 cut(s) 260, 340, 919, 971
BseDI CCNNGG 7 cut(s) 155, 338, 633, 918, 969, 1082, 1317
BseGI GGATG 7 cut(s) 112, 616, 631, 965, 1422, 1486, 1581
BseJI GATNNNNATC 2 cut(s) 481, 831
BseLI CCNNNNNNNGG 2 cut(s) 970, 1218
BseMI GCAATG 2 cut(s) 372, 1347
BseMII CTCAG 5 cut(s) 84, 149, 591, 608, 1545
BseNI ACTGG 1 cut(s) 1101
BseRI GAGGAG 4 cut(s) 554, 608, 1371, 1406
BseXI GCAGC 5 cut(s) 971, 1073, 1285, 1300, 1309
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 2 cut(s) 135, 762
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 1 cut(s) 258
BsiHKAI GWGCWC 3 cut(s) 99, 408, 707
BslFI GGGAC 3 cut(s) 440, 951, 1113
BslI CCNNNNNNNGG 2 cut(s) 970, 1218
BsmAI GTCTC 2 cut(s) 389, 1028
BsmFI GGGAC 3 cut(s) 440, 951, 1113
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 1028
Bsp1286I GDGCHC 4 cut(s) 84, 99, 408, 707
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 3 cut(s) 430, 854, 1388
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 5 cut(s) 85, 148, 592, 609, 1546
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 2 cut(s) 428, 816
BspMI ACCTGC 1 cut(s) 1411
BspPI GGATC 7 cut(s) 206, 782, 809, 822, 827, 1245, 1592
BspTNI GGTCTC 1 cut(s) 1028
BsrDI GCAATG 2 cut(s) 372, 1347
BsrI ACTGG 1 cut(s) 1101
BssECI CCNNGG 7 cut(s) 155, 338, 633, 918, 969, 1082, 1317
BssNAI GTATAC 1 cut(s) 360
BssNI GRCGYC 2 cut(s) 11, 768
BssT1I CCWWGG 3 cut(s) 155, 633, 1082
Bst1107I GTATAC 1 cut(s) 360
Bst2UI CCWGG 4 cut(s) 260, 340, 919, 971
Bst4CI ACNGT 2 cut(s) 715, 984
Bst6I CTCTTC 4 cut(s) 576, 585, 825, 1491
BstACI GRCGYC 2 cut(s) 11, 768
BstC8I GCNNGC 3 cut(s) 84, 286, 957
BstDEI CTNAG 5 cut(s) 93, 135, 600, 617, 1554
BstF5I GGATG 7 cut(s) 112, 616, 631, 965, 1422, 1486, 1581
BstFNI CGCG 1 cut(s) 854
BstMAI GTCTC 2 cut(s) 389, 1028
BstMWI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 923, 1319, 1322, 1349
BstNI CCWGG 4 cut(s) 260, 340, 919, 971
BstNSI RCATGY 2 cut(s) 288, 955
BstSCI CCNGG 4 cut(s) 258, 338, 917, 969
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 5 cut(s) 971, 1073, 1285, 1300, 1309
BstX2I RGATCY 3 cut(s) 211, 814, 1432
BstXI CCANNNNNNTGG 2 cut(s) 296, 346
BstYI RGATCY 3 cut(s) 211, 814, 1432
BstZ17I GTATAC 1 cut(s) 360
BsuI GTATCC 2 cut(s) 733, 1244
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 7 cut(s) 112, 616, 631, 965, 1422, 1486, 1581
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 1411
Cac8I GCNNGC 3 cut(s) 84, 286, 957
CaiI CAGNNNCTG 3 cut(s) 713, 830, 1298
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 2 cut(s) 235, 687
CviAII CATG 7 cut(s) 285, 311, 805, 914, 952, 1227, 1592
CviQI GTAC 2 cut(s) 235, 687
DdeI CTNAG 5 cut(s) 93, 135, 600, 617, 1554
DraI TTTAAA 1 cut(s) 759
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 4 cut(s) 576, 585, 825, 1491
EarI CTCTTC 4 cut(s) 576, 585, 825, 1491
Ecl136II GAGCTC 2 cut(s) 97, 406
Eco130I CCWWGG 3 cut(s) 155, 633, 1082
Eco24I GRGCYC 3 cut(s) 84, 99, 408
Eco31I GGTCTC 1 cut(s) 1028
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 2 cut(s) 97, 406
Eco57I CTGAAG 1 cut(s) 1482
EcoICRI GAGCTC 2 cut(s) 97, 406
EcoRII CCWGG 4 cut(s) 258, 338, 917, 969
EcoT14I CCWWGG 3 cut(s) 155, 633, 1082
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 3 cut(s) 84, 99, 408
ErhI CCWWGG 3 cut(s) 155, 633, 1082
FaeI CATG 7 cut(s) 288, 314, 808, 917, 955, 1230, 1595
FaqI GGGAC 3 cut(s) 440, 951, 1113
FatI CATG 7 cut(s) 284, 310, 804, 913, 951, 1226, 1591
FauI CCCGC 1 cut(s) 847
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 5 cut(s) 960, 1062, 1299, 1314, 1323
FokI GGATG 7 cut(s) 119, 623, 638, 952, 1409, 1493, 1588
FriOI GRGCYC 3 cut(s) 84, 99, 408
Fsp4HI GCNGC 5 cut(s) 960, 1062, 1299, 1314, 1323
FspBI CTAG 4 cut(s) 180, 464, 1065, 1083
GluI GCNGC 5 cut(s) 960, 1062, 1299, 1314, 1323
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 258
Hin1I GRCGYC 2 cut(s) 11, 768
Hin1II CATG 7 cut(s) 288, 314, 808, 917, 955, 1230, 1595
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 2 cut(s) 482, 1078
HphI GGTGA 3 cut(s) 575, 869, 1580
Hpy166II GTNNAC 4 cut(s) 360, 772, 1272, 1588
Hpy188I TCNGA 4 cut(s) 618, 1335, 1532, 1617
Hpy188III TCNNGA 7 cut(s) 215, 380, 472, 486, 718, 734, 824
Hpy8I GTNNAC 4 cut(s) 360, 772, 1272, 1588
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 8 cut(s) 271, 382, 495, 1131, 1228, 1333, 1482, 1600
HpyCH4III ACNGT 2 cut(s) 715, 984
HpyCH4IV ACGT 2 cut(s) 768, 1545
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 923, 1319, 1322, 1349
HpyF3I CTNAG 5 cut(s) 93, 135, 600, 617, 1554
HpySE526I ACGT 2 cut(s) 768, 1545
Hsp92I GRCGYC 2 cut(s) 11, 768
Hsp92II CATG 7 cut(s) 288, 314, 808, 917, 955, 1230, 1595
LmnI GCTCC 5 cut(s) 299, 350, 382, 702, 1087
Lsp1109I GCAGC 5 cut(s) 971, 1073, 1285, 1300, 1309
LweI GCATC 4 cut(s) 436, 458, 817, 1471
MaeI CTAG 4 cut(s) 180, 464, 1065, 1083
MaeII ACGT 2 cut(s) 768, 1545
MaeIII GTNAC 2 cut(s) 306, 1546
MflI RGATCY 3 cut(s) 211, 814, 1432
MhlI GDGCHC 4 cut(s) 84, 99, 408, 707
MlsI TGGCCA 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 1348
Mox20I TGGCCA 1 cut(s) 258
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 1077
MscI TGGCCA 1 cut(s) 258
MseI TTAA 5 cut(s) 512, 528, 758, 1005, 1470
MslI CAYNNNNRTG 3 cut(s) 950, 1212, 1593
Msp20I TGGCCA 1 cut(s) 258
MspA1I CMGCKG 2 cut(s) 92, 432
MspR9I CCNGG 4 cut(s) 260, 340, 919, 971
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 4 cut(s) 260, 340, 919, 971
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 923, 1319, 1322, 1349
NlaIII CATG 7 cut(s) 288, 314, 808, 917, 955, 1230, 1595
NlaIV GGNNCC 2 cut(s) 428, 816
NmeAIII GCCGAG 1 cut(s) 1342
NmuCI GTSAC 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 2 cut(s) 288, 955
OliI CACNNNNGTG 1 cut(s) 1212
PaeI GCATGC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 2 cut(s) 482, 1078
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 5 cut(s) 961, 1063, 1300, 1315, 1324
Psp124BI GAGCTC 2 cut(s) 99, 408
Psp6I CCWGG 4 cut(s) 258, 338, 917, 969
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 4 cut(s) 258, 338, 917, 969
PspN4I GGNNCC 2 cut(s) 428, 816
PspPI GGNCC 1 cut(s) 427
PstNI CAGNNNCTG 3 cut(s) 713, 830, 1298
PsuI RGATCY 3 cut(s) 211, 814, 1432
PsyI GACNNNGTC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 236, 688
RsaNI GTAC 2 cut(s) 235, 687
RseI CAYNNNNRTG 3 cut(s) 950, 1212, 1593
SacI GAGCTC 2 cut(s) 99, 408
SaqAI TTAA 5 cut(s) 512, 528, 758, 1005, 1470
SatI GCNGC 5 cut(s) 960, 1062, 1299, 1314, 1323
Sau96I GGNCC 1 cut(s) 427
ScrFI CCNGG 4 cut(s) 260, 340, 919, 971
SduI GDGCHC 4 cut(s) 84, 99, 408, 707
SfaNI GCATC 4 cut(s) 436, 458, 817, 1471
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 3 cut(s) 950, 1212, 1593
SphI GCATGC 1 cut(s) 288
SsiI CCGC 3 cut(s) 430, 854, 1388
SspMI CTAG 4 cut(s) 180, 464, 1065, 1083
SstI GAGCTC 2 cut(s) 99, 408
StyD4I CCNGG 4 cut(s) 258, 338, 917, 969
StyI CCWWGG 3 cut(s) 155, 633, 1082
TaaI ACNGT 2 cut(s) 715, 984
TaiI ACGT 2 cut(s) 771, 1548
TaqI TCGA 5 cut(s) 99, 408, 471, 1119, 1276
TfiI GAWTC 2 cut(s) 482, 1078
Tru1I TTAA 5 cut(s) 512, 528, 758, 1005, 1470
Tru9I TTAA 5 cut(s) 512, 528, 758, 1005, 1470
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 5 cut(s) 959, 1061, 1298, 1313, 1322
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 8 cut(s) 507, 642, 902, 1197, 1215, 1352, 1592, 1619
TspRI CASTG 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 4 cut(s) 506, 721, 845, 1012
XceI RCATGY 2 cut(s) 288, 955
XmaJI CCTAGG 1 cut(s) 1082
XmiI GTMKAC 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 4 cut(s) 180, 464, 1065, 1083
ZraI GACGTC 1 cut(s) 769
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.