AT4G37120

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17486516 .. 17489354
2839 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37120.1

Sequence Viewer

Length: 1611 bp
ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCACAGGAAGAAATTAGAATTAGAGGAAGCTCGTAAAGCTGGTCTCGCTCCTGCTGAGGTAGACGAAGATGGCAAAGAAATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCATGGTATCTCAAGTCTGAACAGCCGAGTTTGAAGCATCAAAAAAATTGGAAAATTGAACCCGAACCCAAAAAGATATGGTATGATAGAGGTAAAAAGATCTATCAAGCTGAACAATACCGCAAGGGAGCGTGTATAAACTGTGGTGCAATGACTCACAGTTCTAAAGCATGTATGGATAGACCTCGTAAGATTGGAGCTAAATACACAAACATGAACATTGCTGCTGATGAGAAAATCGAGAGTTTTGAACTTGACTATGATGGGAAGAGGGACAGATGGAACGGTTATGATACTTCAACCTACCGTCATGTGGTAGATCGTTATGATGCTAAAGAGGAGGCACGAAAGAAGTATCTCAAGGAGCAGCAACTTAAGAAACTAGAGGAGAAGAACAATAATGAAAACGGTGATGATGCAACCAGTGATGGGGAGGAAGACCTTGACGACTTGAGGGTCGATGAAGCTAAGGTTGATGAGAGTAGGCAAATGGATTTTGCAAAGGTTGAGAAACGTGTTCGAACAACTGGTGGTGGTAGCACAGGAACTGTTAGGAATCTGCGTATCAGAGAAGACACTGCTAAATACCTGTTGAATCTTGATGTAAACTCAGCTCATTATGACCCTAAAACTCGGTCCATGCGTGAAGATCCACTTCCAGATGCAGATCCAAATGAAAAATTCTATTTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTCTGGAGTTCAAACAGATAAACATCCATTCATGTGAAGCATTTGACAAGGGACATGACATGCATATGCAAGCGGCTCCATCCCAAGCTGAATTGCTCTATAAGAACTTTAAAGTTGCAAAGGAAAAACTGAAAACTCAGACAAAGGACACCATTATGGAAAAGTATGGGAATGCAGCTACAGAAGGTGAAATTCCGATGGAGCTTTTGCTTGGCCAAAGTGAAAGACAAATTGAGTATGACAGGGCAGGGAGGATTATGAAGGGACAGGAGGTGATAATTCCAAAGAGCAAATATGAAGAAGATGTTCATGCTAACAATCACACAAGTGTTTGGGGATCATGGTGGAAAGATCACCAATGGGGATATAAATGTTGCCAGCAGACAATTCGCAACAGCTATTGCACAGGTTCTGCTGGAATTGAAGCTGCAGAGGCGTCCATTGATCTGATGAAGGCTAATATTGCTCGCAAAGAAGCTTCTAAAGAGAGTCCGAAGAAGGTTGAAGAGAAGAAAATGGCGACATGGGGAACTGATATTCCTGAAGATTTGGAATTGAACGAGGAGGCACTTGCAAATGCTCTTAAAAAGGAGGATCTAAGTAGGAGGGAAGAAAAAGATGAGAGGAAACGCAAATACAATGTCAATTACACCAACGATGTGACCTCCGAGGAGATGGAAGCTTACAGAATGAAGAGAGTTCACCACGAGGACCCAATGAGAAATTTCCCCGGCTGA

Protein Analysis

536

Amino Acids

62.06

Weight (kDa)

6.15

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 136 - 405 1.9e-90 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 877
AccI GTMKAC 1 cut(s) 99
AciI CCGC 2 cut(s) 274, 947
AclWI GGATC 4 cut(s) 797, 815, 1219, 1476
AcoI YGGCCR 2 cut(s) 868, 1087
AcsI RAATTY 3 cut(s) 833, 1065, 1597
AcuI CTGAAG 1 cut(s) 1437
AcyI GRCGYC 1 cut(s) 1310
AfiI CCNNNNNNNGG 3 cut(s) 466, 582, 877
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 9 cut(s) 187, 212, 404, 453, 748, 886, 1298, 1379, 1432
AleI CACNNNNGTG 1 cut(s) 1200
AloI GAACNNNNNNTCC 2 cut(s) 1396, 1428
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 4 cut(s) 797, 815, 1219, 1476
AlwNI CAGNNNCTG 2 cut(s) 701, 1286
AoxI GGCC 2 cut(s) 868, 1087
ApeKI GCWGC 4 cut(s) 377, 520, 1049, 1301
ApoI RAATTY 3 cut(s) 833, 1065, 1597
ArsI GACNNNNNNTTYG 2 cut(s) 1500, 1532
Asp700I GAANNNNTTC 1 cut(s) 1179
AspS9I GGNCC 2 cut(s) 789, 1585
AsuC2I CCSGG 1 cut(s) 1605
AsuHPI GGTGA 5 cut(s) 575, 1073, 1159, 1220, 1568
AsuII TTCGAA 1 cut(s) 673
AvaII GGWCC 2 cut(s) 789, 1585
BalI TGGCCA 2 cut(s) 870, 1089
BauI CACGAG 1 cut(s) 1580
BbsI GAAGAC 2 cut(s) 597, 732
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 4 cut(s) 364, 532, 1061, 1288
BccI CCATC 7 cut(s) 101, 410, 426, 575, 961, 1066, 1543
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BcnI CCSGG 1 cut(s) 1605
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 2 cut(s) 30, 536
BfmI CTRYAG 2 cut(s) 1053, 1302
BfrI CTTAAG 1 cut(s) 527
BglII AGATCT 1 cut(s) 252
BisI GCNGC 5 cut(s) 378, 521, 948, 1050, 1302
BlsI GCNGC 5 cut(s) 379, 522, 949, 1051, 1303
Bme1390I CCNGG 1 cut(s) 1605
Bme18I GGWCC 2 cut(s) 789, 1585
BmgT120I GGNCC 2 cut(s) 789, 1585
BmiI GGNNCC 2 cut(s) 951, 1587
BmrFI CCNGG 1 cut(s) 1605
BmsI GCATC 4 cut(s) 199, 472, 559, 805
BpiI GAAGAC 2 cut(s) 597, 732
BpmI CTGGAG 1 cut(s) 899
Bpu10I CCTNAGC 2 cut(s) 93, 621
Bpu14I TTCGAA 1 cut(s) 673
BpuEI CTTGAG 3 cut(s) 149, 497, 625
BpuMI CCSGG 1 cut(s) 1605
BsaBI GATNNNNATC 2 cut(s) 819, 896
BsaHI GRCGYC 1 cut(s) 1310
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 155, 1542, 1603
Bsc4I CCNNNNNNNGG 3 cut(s) 466, 582, 877
Bse1I ACTGG 2 cut(s) 576, 685
Bse3DI GCAATG 2 cut(s) 309, 372
Bse8I GATNNNNATC 2 cut(s) 819, 896
BseDI CCNNGG 3 cut(s) 155, 1542, 1603
BseGI GGATG 2 cut(s) 897, 953
BseJI GATNNNNATC 2 cut(s) 819, 896
BseLI CCNNNNNNNGG 3 cut(s) 466, 582, 877
BseMI GCAATG 2 cut(s) 309, 372
BseMII CTCAG 4 cut(s) 84, 126, 777, 1025
BseNI ACTGG 2 cut(s) 576, 685
BseRI GAGGAG 4 cut(s) 506, 554, 1451, 1559
BseXI GCAGC 4 cut(s) 364, 532, 1061, 1288
BshFI GGCC 2 cut(s) 870, 1089
BsiSI CCGG 1 cut(s) 1605
BslFI GGGAC 3 cut(s) 440, 939, 1152
BslI CCNNNNNNNGG 3 cut(s) 466, 582, 877
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 3 cut(s) 440, 939, 1152
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 870, 1089
Bso31I GGTCTC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 673
Bsp143I GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 2 cut(s) 274, 947
BspANI GGCC 2 cut(s) 870, 1089
BspCNI CTCAG 4 cut(s) 85, 127, 776, 1024
BspLI GGNNCC 2 cut(s) 951, 1587
BspMAI CTGCAG 1 cut(s) 1306
BspPI GGATC 4 cut(s) 797, 815, 1219, 1476
BspT104I TTCGAA 1 cut(s) 673
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 309, 372
BsrI ACTGG 2 cut(s) 576, 685
BssECI CCNNGG 3 cut(s) 155, 1542, 1603
BssMI GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
BssNI GRCGYC 1 cut(s) 1310
BssSI CACGAG 1 cut(s) 1580
BssT1I CCWWGG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 1580
Bst4CI ACNGT 7 cut(s) 296, 314, 440, 461, 563, 703, 866
Bst6I CTCTTC 3 cut(s) 416, 1374, 1562
BstACI GRCGYC 1 cut(s) 1310
BstAFI CTTAAG 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 945, 1253, 1342
BstDEI CTNAG 6 cut(s) 93, 135, 621, 763, 1011, 1472
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 897, 953
BstKTI GATC 9 cut(s) 40, 255, 475, 805, 823, 1214, 1228, 1321, 1471
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
BstMWI GCNNNNNNNGC 5 cut(s) 17, 74, 83, 1307, 1337
BstNSI RCATGY 2 cut(s) 327, 937
BstSCI CCNGG 1 cut(s) 1603
BstSFI CTRYAG 2 cut(s) 1053, 1302
BstV1I GCAGC 4 cut(s) 364, 532, 1061, 1288
BstV2I GAAGAC 2 cut(s) 597, 732
BstX2I RGATCY 4 cut(s) 252, 802, 820, 1468
BstYI RGATCY 4 cut(s) 252, 802, 820, 1468
BsuRI GGCC 2 cut(s) 870, 1089
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 897, 953
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 3 cut(s) 583, 729, 871
Cac8I GCNNGC 3 cut(s) 945, 1253, 1342
CaiI CAGNNNCTG 2 cut(s) 701, 1286
Cfr13I GGNCC 2 cut(s) 789, 1585
CseI GACGC 1 cut(s) 1299
DdeI CTNAG 6 cut(s) 93, 135, 621, 763, 1011, 1472
DpnI GATC 9 cut(s) 39, 254, 474, 804, 822, 1213, 1227, 1320, 1470
DpnII GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
DraI TTTAAA 1 cut(s) 985
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 2 cut(s) 868, 1087
Eam1104I CTCTTC 3 cut(s) 416, 1374, 1562
EarI CTCTTC 3 cut(s) 416, 1374, 1562
Eco130I CCWWGG 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 789, 1585
Eco57I CTGAAG 1 cut(s) 1437
EcoO109I RGGNCCY 1 cut(s) 1585
EcoT14I CCWWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 939
ErhI CCWWGG 1 cut(s) 155
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 3 cut(s) 440, 939, 1152
FauNDI CATATG 1 cut(s) 939
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 5 cut(s) 378, 521, 948, 1050, 1302
FokI GGATG 2 cut(s) 884, 940
Fsp4HI GCNGC 5 cut(s) 378, 521, 948, 1050, 1302
FspBI CTAG 2 cut(s) 30, 536
GluI GCNGC 5 cut(s) 378, 521, 948, 1050, 1302
GsuI CTGGAG 1 cut(s) 899
HaeIII GGCC 2 cut(s) 870, 1089
HapII CCGG 1 cut(s) 1605
HgaI GACGC 1 cut(s) 1299
Hin1I GRCGYC 1 cut(s) 1310
HindIII AAGCTT 2 cut(s) 1350, 1554
HinfI GANTC 4 cut(s) 307, 709, 748, 1363
HpaII CCGG 1 cut(s) 1605
HphI GGTGA 5 cut(s) 575, 1073, 1159, 1220, 1568
Hpy166II GTNNAC 3 cut(s) 100, 760, 1576
Hpy188I TCNGA 7 cut(s) 172, 722, 1014, 1071, 1323, 1368, 1543
Hpy188III TCNNGA 5 cut(s) 394, 752, 812, 878, 1415
Hpy8I GTNNAC 3 cut(s) 100, 760, 1576
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 1052, 1129, 1321, 1366
HpyCH4III ACNGT 7 cut(s) 296, 314, 440, 461, 563, 703, 866
HpyCH4IV ACGT 1 cut(s) 667
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 74, 83, 1307, 1337
HpyF3I CTNAG 6 cut(s) 93, 135, 621, 763, 1011, 1472
HpySE526I ACGT 1 cut(s) 667
Hsp92I GRCGYC 1 cut(s) 1310
Kzo9I GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
LmnI GCTCC 7 cut(s) 91, 157, 281, 350, 517, 955, 1075
Lsp1109I GCAGC 4 cut(s) 364, 532, 1061, 1288
LweI GCATC 4 cut(s) 199, 472, 559, 805
MaeI CTAG 2 cut(s) 30, 536
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 1534
MalI GATC 9 cut(s) 39, 254, 474, 804, 822, 1213, 1227, 1320, 1470
MboI GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
MflI RGATCY 4 cut(s) 252, 802, 820, 1468
MlsI TGGCCA 2 cut(s) 870, 1089
MluNI TGGCCA 2 cut(s) 870, 1089
MlyI GAGTC 2 cut(s) 301, 1372
Mox20I TGGCCA 2 cut(s) 870, 1089
Mph1103I ATGCAT 1 cut(s) 939
MroXI GAANNNNTTC 1 cut(s) 1179
MscI TGGCCA 2 cut(s) 870, 1089
MseI TTAA 4 cut(s) 24, 528, 984, 1458
MslI CAYNNNNRTG 5 cut(s) 365, 906, 938, 1028, 1200
Msp20I TGGCCA 2 cut(s) 870, 1089
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 1605
MspR9I CCNGG 1 cut(s) 1605
Mva1269I GAATGC 1 cut(s) 1051
MwoI GCNNNNNNNGC 5 cut(s) 17, 74, 83, 1307, 1337
NciI CCSGG 1 cut(s) 1605
NcoI CCATGG 1 cut(s) 155
NdeI CATATG 1 cut(s) 939
NdeII GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
NlaIV GGNNCC 2 cut(s) 951, 1587
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 1534
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 2 cut(s) 327, 937
NspV TTCGAA 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 1200
PcsI WCGNNNNNNNCGW 1 cut(s) 793
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 1179
PfeI GAWTC 2 cut(s) 709, 748
PflMI CCANNNNNTGG 1 cut(s) 877
PkrI GCNGC 5 cut(s) 379, 522, 949, 1051, 1303
PleI GAGTC 2 cut(s) 301, 1371
PpsI GAGTC 2 cut(s) 301, 1371
PpuMI RGGWCCY 1 cut(s) 1585
Psp5II RGGWCCY 1 cut(s) 1585
PspN4I GGNNCC 2 cut(s) 951, 1587
PspPI GGNCC 2 cut(s) 789, 1585
PspPPI RGGWCCY 1 cut(s) 1585
PstI CTGCAG 1 cut(s) 1306
PstNI CAGNNNCTG 2 cut(s) 701, 1286
PsuI RGATCY 4 cut(s) 252, 802, 820, 1468
RseI CAYNNNNRTG 5 cut(s) 365, 906, 938, 1028, 1200
SaqAI TTAA 4 cut(s) 24, 528, 984, 1458
SatI GCNGC 5 cut(s) 378, 521, 948, 1050, 1302
Sau3AI GATC 9 cut(s) 37, 252, 472, 802, 820, 1211, 1225, 1318, 1468
Sau96I GGNCC 2 cut(s) 789, 1585
SchI GAGTC 2 cut(s) 301, 1372
ScrFI CCNGG 1 cut(s) 1605
SfaNI GCATC 4 cut(s) 199, 472, 559, 805
SfcI CTRYAG 2 cut(s) 1053, 1302
SfuI TTCGAA 1 cut(s) 673
SinI GGWCC 2 cut(s) 789, 1585
SmiMI CAYNNNNRTG 5 cut(s) 365, 906, 938, 1028, 1200
SmlI CTYRAG 4 cut(s) 164, 512, 527, 604
SmoI CTYRAG 4 cut(s) 164, 512, 527, 604
SsiI CCGC 2 cut(s) 274, 947
SspI AATATT 1 cut(s) 1336
SspMI CTAG 2 cut(s) 30, 536
StyD4I CCNGG 1 cut(s) 1603
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 7 cut(s) 296, 314, 440, 461, 563, 703, 866
TaiI ACGT 1 cut(s) 670
TaqI TCGA 3 cut(s) 393, 612, 673
TaqII GACCGA 1 cut(s) 777
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 2 cut(s) 709, 748
Tru1I TTAA 4 cut(s) 24, 528, 984, 1458
Tru9I TTAA 4 cut(s) 24, 528, 984, 1458
TscAI CASTG 3 cut(s) 583, 736, 871
TseFI GTSAC 1 cut(s) 1534
TseI GCWGC 4 cut(s) 377, 520, 1049, 1301
Tsp45I GTSAC 1 cut(s) 1534
TspRI CASTG 3 cut(s) 583, 736, 871
Van91I CCANNNNNTGG 1 cut(s) 877
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 789, 1585
XapI RAATTY 3 cut(s) 833, 1065, 1597
XceI RCATGY 2 cut(s) 327, 937
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 1179
XspI CTAG 2 cut(s) 30, 536
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.