RchiOBHm_Chr7g0183821

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001496
Physical Location & Seq
Reverse (-)
4564467 .. 4565780
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16402

Sequence Viewer

Length: 1314 bp
ATGGTGTCGACAAATCGGCATATAATTGACAAATCGTTAGTGGCTCCATTTAAATCCAGGCAAGAGCATCGCAAGAACATTGAATTGGAAGAAGCGCGTAAGGCTGGGCTTGTCCCTGCTGAAGTCGATAAGAATGGAAAGGAGATCAATCCTCATATACCCAAATATGTGGCTGATACACCTTGGTATATCAAAACCGAGGAGGGACCTAGTCTAGAGCATCAAAGAAAGCCCGAATCAAATGTGAATGGCAAGAAGAAATCACAGTATGACAGAGGTGCGAAGCTATTCCAGGCCCTTACATATAGGAAGGGTGCATGTACGAACTGTGGATCCATGAAACATGATGCCAAGTCATGTACCGAAAGAACGAGGAAAGTTGGAGCAAAATGGACTGGCAAGTACATTGCTCCCGATGAGATGATAGAGACTCTTGCACTTCTCAGCTATGATGAAAAGCGGGACCGGTGGAATGGATATAATCCATCAAGCTATGCCCATGTTATTAAGAGATATGAATTACATCAGGAAGCTCGAAACAAATACTTGAAGGAAGAACGAATCCAGAAATTAGAAGATGAGACTGATGATATCAGGGTAGATGAAGCCAAGGCTGATGAGAGCAAGCAAACAGACTTCGCAAAGGTCGAGAAGCGTGTGCGCACAACGGGTGGTGGAAGCACTGGAACTGTCAGAAACTTGCGTATTCGTGAGGACACAGCAAAATATCTTCGGAATCTTGATGTCAACTCTGCGCATTATGATCCGAAAAGCCGGTCCATGCGTGAAAACCCTAATCCAGATGCAGATCCGAACGAGCAGTTTTACGTGGGAGATAATGTATGGAGAAACACTGGTCAAGCTCTGGAGTTCGGGCAGATGAACATTCATGCTTTGGAAGCATTTGAGAGGGGACAAGATGTTCACATGCAAGCAGCTCCATCCCAAGCTGAGTTTCTTTATAAAAATTATAAGGCGATTAAGGAGAGATTGACTTCACAGACGAATTGCACCATTCTAGAAAAGTATGGCAATGCAGCTAGTGGAGAAGAACTTCCTAAGGAGCTTCTACTGGGACAGAGCGAAAGAGATGTTGAATACGATCGATCTGGGAGGATCATCAAGGGCAAGGAAGAAGCGGTTCCGAGGAGCAAATATGCAGAAGATGTCAGTATCAACAATCATACTTGTGTGTGGGGTTCGTGGTGGAAAGGTCACCAATGGGGCTACAAGTGTTGTAAGCAGTTTATGCGAAACAGTTATTGCACAGGTGCTGCTGGAGTTGAGGCTGCAATACATCTCTTGGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Slu7

Protein Analysis

437

Amino Acids

50.1

Weight (kDa)

8.65

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 148 - 401 8e-89 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 963, 972
Acc16I TGCGCA 2 cut(s) 662, 756
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 97
AciI CCGC 2 cut(s) 460, 1139
AclWI GGATC 5 cut(s) 327, 340, 758, 803, 1124
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 3 cut(s) 322, 361, 404
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 3 cut(s) 83, 550, 1097
AjnI CCWGG 2 cut(s) 56, 291
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 939, 971
AloI GAACNNNNNNTCC 4 cut(s) 317, 349, 906, 938
AluBI AGCT 9 cut(s) 286, 447, 492, 533, 863, 938, 950, 1040, 1066
AluI AGCT 9 cut(s) 286, 447, 492, 533, 863, 938, 950, 1040, 1066
Alw26I GTCTC 2 cut(s) 422, 575
AlwI GGATC 5 cut(s) 327, 340, 758, 803, 1124
AlwNI CAGNNNCTG 1 cut(s) 1274
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 4 cut(s) 935, 1037, 1274, 1289
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
AsiGI ACCGGT 1 cut(s) 465
Asp700I GAANNNNTTC 3 cut(s) 287, 1053, 1140
AspLEI GCGC 3 cut(s) 97, 663, 757
AspS9I GGNCC 4 cut(s) 206, 295, 463, 777
AsuHPI GGTGA 1 cut(s) 1208
AvaII GGWCC 3 cut(s) 206, 463, 777
AxyI CCTNAGG 1 cut(s) 1059
BamHI GGATCC 1 cut(s) 332
BbvI GCAGC 4 cut(s) 947, 1049, 1261, 1276
BccI CCATC 2 cut(s) 493, 949
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 58, 293
BcoDI GTCTC 2 cut(s) 422, 575
BfaI CTAG 4 cut(s) 210, 215, 1019, 1041
BisI GCNGC 4 cut(s) 936, 1038, 1275, 1290
BlsI GCNGC 4 cut(s) 937, 1039, 1276, 1291
Bme1390I CCNGG 2 cut(s) 58, 293
Bme18I GGWCC 3 cut(s) 206, 463, 777
BmgT120I GGNCC 4 cut(s) 206, 295, 463, 777
BmiI GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1308
BmrFI CCNGG 2 cut(s) 58, 293
BmrI ACTGGG 1 cut(s) 1082
BmsI GCATC 4 cut(s) 76, 229, 337, 793
BmuI ACTGGG 1 cut(s) 1082
BpmI CTGGAG 2 cut(s) 887, 1299
Bsa29I ATCGAT 1 cut(s) 1105
BsaAI YACGTR 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 807
BsaJI CCNNGG 4 cut(s) 182, 198, 609, 1145
BsaWI WCCGGW 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bse118I RCCGGY 2 cut(s) 465, 774
Bse1I ACTGG 4 cut(s) 400, 688, 859, 1077
Bse21I CCTNAGG 1 cut(s) 1059
Bse3DI GCAATG 2 cut(s) 405, 1039
Bse8I GATNNNNATC 1 cut(s) 807
BseBI CCWGG 2 cut(s) 58, 293
BseCI ATCGAT 1 cut(s) 1105
BseDI CCNNGG 4 cut(s) 182, 198, 609, 1145
BseGI GGATG 1 cut(s) 941
BseJI GATNNNNATC 1 cut(s) 807
BseMI GCAATG 2 cut(s) 405, 1039
BseMII CTCAG 2 cut(s) 457, 942
BseNI ACTGG 4 cut(s) 400, 688, 859, 1077
BseRI GAGGAG 2 cut(s) 215, 1162
BseXI GCAGC 4 cut(s) 947, 1049, 1261, 1276
BseYI CCCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 1105
BshFI GGCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 1105
BsiEI CGRYCG 1 cut(s) 1105
BsiSI CCGG 2 cut(s) 466, 775
BslFI GGGAC 5 cut(s) 98, 219, 476, 927, 1089
BsmAI GTCTC 2 cut(s) 422, 575
BsmFI GGGAC 5 cut(s) 98, 219, 476, 927, 1089
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
BspACI CCGC 2 cut(s) 460, 1139
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 456, 943
BspDI ATCGAT 1 cut(s) 1105
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1308
BspPI GGATC 5 cut(s) 327, 340, 758, 803, 1124
BsrDI GCAATG 2 cut(s) 405, 1039
BsrFI RCCGGY 2 cut(s) 465, 774
BsrI ACTGG 4 cut(s) 400, 688, 859, 1077
BssAI RCCGGY 2 cut(s) 465, 774
BssECI CCNNGG 4 cut(s) 182, 198, 609, 1145
BssMI GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
BssT1I CCWWGG 2 cut(s) 182, 609
Bst2UI CCWGG 2 cut(s) 58, 293
Bst4CI ACNGT 4 cut(s) 267, 329, 691, 1259
BstAPI GCANNNNNTGC 1 cut(s) 1249
BstBAI YACGTR 1 cut(s) 829
BstC8I GCNNGC 2 cut(s) 626, 933
BstDEI CTNAG 3 cut(s) 443, 951, 1059
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 1 cut(s) 941
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 3 cut(s) 97, 663, 757
BstKTI GATC 7 cut(s) 147, 335, 766, 811, 1105, 1109, 1119
BstMAI GTCTC 2 cut(s) 422, 575
BstMBI GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
BstMCI CGRYCG 1 cut(s) 1105
BstMWI GCNNNNNNNGC 3 cut(s) 101, 899, 1249
BstNI CCWGG 2 cut(s) 58, 293
BstNSI RCATGY 2 cut(s) 321, 931
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 2 cut(s) 56, 291
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 4 cut(s) 947, 1049, 1261, 1276
BstX2I RGATCY 2 cut(s) 332, 808
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 2 cut(s) 332, 808
Bsu15I ATCGAT 1 cut(s) 1105
Bsu36I CCTNAGG 1 cut(s) 1059
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 1105
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 941
BtsIMutI CAGTG 2 cut(s) 681, 852
Cac8I GCNNGC 2 cut(s) 626, 933
CaiI CAGNNNCTG 1 cut(s) 1274
CfoI GCGC 3 cut(s) 97, 663, 757
Cfr10I RCCGGY 2 cut(s) 465, 774
Cfr13I GGNCC 4 cut(s) 206, 295, 463, 777
ClaI ATCGAT 1 cut(s) 1105
Csp6I GTAC 3 cut(s) 321, 360, 403
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 8 cut(s) 318, 337, 344, 357, 500, 781, 890, 928
CviQI GTAC 3 cut(s) 321, 360, 403
DdeI CTNAG 3 cut(s) 443, 951, 1059
DpnI GATC 7 cut(s) 146, 334, 765, 810, 1104, 1108, 1118
DpnII GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
DraI TTTAAA 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 182, 609
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 206, 463, 777
Eco57I CTGAAG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 1059
Eco91I GGTNACC 1 cut(s) 1214
EcoO109I RGGNCCY 2 cut(s) 206, 295
EcoO65I GGTNACC 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 56, 291
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 2 cut(s) 182, 609
ErhI CCWWGG 2 cut(s) 182, 609
FaeI CATG 8 cut(s) 321, 340, 347, 360, 503, 784, 893, 931
FaqI GGGAC 5 cut(s) 98, 219, 476, 927, 1089
FatI CATG 8 cut(s) 317, 336, 343, 356, 499, 780, 889, 927
FauI CCCGC 1 cut(s) 453
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 4 cut(s) 936, 1038, 1275, 1290
FokI GGATG 1 cut(s) 928
Fsp4HI GCNGC 4 cut(s) 936, 1038, 1275, 1290
FspAI RTGCGCAY 1 cut(s) 662
FspBI CTAG 4 cut(s) 210, 215, 1019, 1041
FspI TGCGCA 2 cut(s) 662, 756
GlaI GCGC 3 cut(s) 96, 662, 756
GluI GCNGC 4 cut(s) 936, 1038, 1275, 1290
GsaI CCCAGC 1 cut(s) 108
GsuI CTGGAG 2 cut(s) 887, 1299
HaeIII GGCC 1 cut(s) 296
HapII CCGG 2 cut(s) 466, 775
HhaI GCGC 3 cut(s) 97, 663, 757
Hin1II CATG 8 cut(s) 321, 340, 347, 360, 503, 784, 893, 931
Hin6I GCGC 3 cut(s) 95, 661, 755
HinP1I GCGC 3 cut(s) 95, 661, 755
HincII GTYRAC 2 cut(s) 9, 748
HindII GTYRAC 2 cut(s) 9, 748
HinfI GANTC 4 cut(s) 236, 430, 561, 736
HpaII CCGG 2 cut(s) 466, 775
HphI GGTGA 1 cut(s) 1208
Hpy166II GTNNAC 3 cut(s) 9, 748, 925
Hpy188I TCNGA 5 cut(s) 695, 735, 768, 813, 1146
Hpy8I GTNNAC 3 cut(s) 9, 748, 925
HpyAV CCTTC 2 cut(s) 304, 544
HpyCH4III ACNGT 4 cut(s) 267, 329, 691, 1259
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 9 cut(s) 317, 437, 806, 931, 1011, 1037, 1160, 1266, 1292
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 899, 1249
HpyF3I CTNAG 3 cut(s) 443, 951, 1059
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 8 cut(s) 321, 340, 347, 360, 503, 784, 893, 931
HspAI GCGC 3 cut(s) 95, 661, 755
Kzo9I GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
LmnI GCTCC 7 cut(s) 49, 383, 415, 943, 1063, 1149, 1306
Lsp1109I GCAGC 4 cut(s) 947, 1049, 1261, 1276
LweI GCATC 4 cut(s) 76, 229, 337, 793
MaeI CTAG 4 cut(s) 210, 215, 1019, 1041
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 1 cut(s) 1214
MalI GATC 7 cut(s) 146, 334, 765, 810, 1104, 1108, 1118
MboI GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
MboII GAAGA 8 cut(s) 101, 268, 566, 587, 722, 1061, 1145, 1175
MflI RGATCY 2 cut(s) 332, 808
MluCI AATT 6 cut(s) 24, 83, 518, 569, 967, 1006
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 361
MroXI GAANNNNTTC 3 cut(s) 287, 1053, 1140
MseI TTAA 4 cut(s) 51, 507, 981, 1312
MslI CAYNNNNRTG 1 cut(s) 1188
MspI CCGG 2 cut(s) 466, 775
MspR9I CCNGG 2 cut(s) 58, 293
MvaI CCWGG 2 cut(s) 58, 293
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 101, 899, 1249
NdeII GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
NlaIII CATG 8 cut(s) 321, 340, 347, 360, 503, 784, 893, 931
NlaIV GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1308
NmuCI GTSAC 1 cut(s) 1214
NsbI TGCGCA 2 cut(s) 662, 756
NspI RCATGY 2 cut(s) 321, 931
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PdmI GAANNNNTTC 3 cut(s) 287, 1053, 1140
PfeI GAWTC 3 cut(s) 236, 561, 736
PflFI GACNNNGTC 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 4 cut(s) 937, 1039, 1276, 1291
Ple19I CGATCG 1 cut(s) 1105
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 829
PpuMI RGGWCCY 1 cut(s) 206
PsiI TTATAA 2 cut(s) 963, 972
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 56, 291
PspEI GGTNACC 1 cut(s) 1214
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 2 cut(s) 56, 291
PspN4I GGNNCC 6 cut(s) 45, 207, 334, 464, 1143, 1308
PspPI GGNCC 4 cut(s) 206, 295, 463, 777
PspPPI RGGWCCY 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 1274
PsuI RGATCY 2 cut(s) 332, 808
PsyI GACNNNGTC 1 cut(s) 210
PvuI CGATCG 1 cut(s) 1105
RsaI GTAC 3 cut(s) 322, 361, 404
RsaNI GTAC 3 cut(s) 321, 360, 403
RseI CAYNNNNRTG 1 cut(s) 1188
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 4 cut(s) 51, 507, 981, 1312
SatI GCNGC 4 cut(s) 936, 1038, 1275, 1290
Sau3AI GATC 7 cut(s) 144, 332, 763, 808, 1102, 1106, 1116
Sau96I GGNCC 4 cut(s) 206, 295, 463, 777
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 58, 293
SfaNI GCATC 4 cut(s) 76, 229, 337, 793
SinI GGWCC 3 cut(s) 206, 463, 777
SmiI ATTTAAAT 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 1188
Sse9I AATT 6 cut(s) 24, 83, 518, 569, 967, 1006
SsiI CCGC 2 cut(s) 460, 1139
SspMI CTAG 4 cut(s) 210, 215, 1019, 1041
StyD4I CCNGG 2 cut(s) 56, 291
StyI CCWWGG 2 cut(s) 182, 609
SwaI ATTTAAAT 1 cut(s) 52
TaaI ACNGT 4 cut(s) 267, 329, 691, 1259
TaiI ACGT 1 cut(s) 831
TaqI TCGA 5 cut(s) 8, 126, 535, 648, 1105
TasI AATT 6 cut(s) 24, 83, 518, 569, 967, 1006
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 3 cut(s) 236, 561, 736
Tru1I TTAA 4 cut(s) 51, 507, 981, 1312
Tru9I TTAA 4 cut(s) 51, 507, 981, 1312
TscAI CASTG 2 cut(s) 688, 859
TseFI GTSAC 1 cut(s) 1214
TseI GCWGC 4 cut(s) 935, 1037, 1274, 1289
Tsp45I GTSAC 1 cut(s) 1214
TspDTI ATGAA 6 cut(s) 353, 468, 531, 618, 878, 896
TspRI CASTG 2 cut(s) 688, 859
Tth111I GACNNNGTC 1 cut(s) 210
VpaK11BI GGWCC 3 cut(s) 206, 463, 777
XbaI TCTAGA 2 cut(s) 214, 1018
XceI RCATGY 2 cut(s) 321, 931
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 3 cut(s) 287, 1053, 1140
XspI CTAG 4 cut(s) 210, 215, 1019, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.