MD16G1219100.v1.1

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
21762940 .. 21767926
4987 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1219100.v1.1.491

Sequence Viewer

Length: 1740 bp
ATGGCTACTGCATCAGCGGCTTTCAAATCAAGGGAGGATCATCGGAAGCAGATGGAATTGGAGGAAGCGCATAAAGCTGGGCTAGCGCCAGCTGAAGTTGATGAGGATGGGAAAGAGATTAATCCTCATATTCCTCAATATATGTCATATGCACCTTGGTATCTTAAGGCTAATCAACGAAGTTTGAAACATCAAAGGAAATGGAAATCAGATCCAAATTATACAAAATCCTGGTACGACAGAGGTGCAAAGACTTTTCAGGCTGATAAGTACCAGAAGGGAGCATGTGAAAAGTATGTGGATCATGCATTGCTTTGGGAGTTTAATGATCGCGGTATTCCACTGGGAAGTGCTTTTCATATAGGGAATGACAAGATTGCTGATGGTGTTATGAGCTCACAAGATTCATATATCCGCTCTTATCCAAAACTGGGGGTTTCATCCTTTTCTTTTTACAGCTGTGGGGCGATCACGCATACCACAAAGTTGTGCATGGAGAGGCCTAGAAAAAAAGGAGCAAGATGGACAAACATGCACATTGCACCTGATGAAAAAATAGAGAGTTTTGAGCTGGATTATGATGGAAAACGGGATAGATGGAATGGTTTTGATGCAGCAACTTATGCTCATATCATTGAGAGATACGAGGCAAGGGATGAGGCTAGAAGGAAATACCTGAAGGAACAGCAGATAAAAAAGTTGGAGGAGAAAAATAATAAGCAGAATGGGGAAGGGGAGATTAGTGAAGATGATGACGATGATGATGCTCTGAAGGTAGATGAGGCCAAGGTTGACGAAAGCAAACAGATGGATTTTGCAAGGGTTGAGAAGCGTGTTCGCACGACTGGTGGTGGAAGCACTGGAACTGTCAGAAATTTGCGCATTCGGGAGGACACAGCTAAATATCTTTTGAATCTTGATGTCAATTCTGCTTATTATGATCCCAAAACTCGGTCCATGCGTGAAGATCCTCTTCCTGATGCTGACCCGAATGATAAGTTTTATGGAGGAGATAACAAATATAGAGTGAGTGGGCAAGCTCTAGAGTTCAAGCAGCTCAATATTCATGCATGGGAGGCATTGGAAAAAGGGCAAGACATTCACATGCAAGCTGCTCCATCTCAAGCAGAATTACTGTATAAGAACTTTAAGGTCATTAAGGAGAAGTATGGCAATGCTGCAACTGAAGAACAACTTCCGAAGGAGCTTCTTTTGGGACAGTCTGAGAACCAAGTTGAATATAATCGTGCTGGCAGAGTTGTAAGGGGCATGGAGACATCCCTTCCAAAGAGTAAATATGAAGAGGATGTTTATATCAATAACCACACAAGTGTTTGGGGATCATGGTGGAAGGATCACCAATGGGGATACAAGTGTTGTAAGCAAACAATTCGGAACAGTTATTGCACTGGTGTAGCTGGAGTTGAGGCTGCCGTGGCAACTGCAGACCTAATGAATGCGAACATTGCCCGCAAAGTAGCCTCTGAAGAGAAGCCTGCTCCAACAGAAGAAAAGAGGGTTGCTACCTGGGGAACTGATATACCCGACGACTTGGTCCTTGACCAGAAAAAACTTGATGATGCTCTTAAGAAGGAGGATGAGAGAAAGACGGAAGAAAAGGATGAAAGAAAGCGCAAATACAATGTTAAATGGGACGATAAGGTTACTCCCGAGGAGATGGAGGCGTATCGAATGAAAAAGATTCATCATGACGATCCCATGAAAGATTTCCTGCACTAA

Protein Analysis

580

Amino Acids

66.93

Weight (kDa)

6.21

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 191 - 448 8.4e-84 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1553
Acc16I TGCGCA 1 cut(s) 881
AccBSI CCGCTC 1 cut(s) 417
AccII CGCG 1 cut(s) 333
AciI CCGC 4 cut(s) 17, 333, 415, 1471
AclWI GGATC 8 cut(s) 45, 206, 309, 935, 962, 1348, 1362, 1709
AcsI RAATTY 1 cut(s) 874
AcuI CTGAAG 5 cut(s) 114, 698, 791, 1206, 1506
AfaI GTAC 2 cut(s) 236, 272
AfiI CCNNNNNNNGG 2 cut(s) 431, 951
AflII CTTAAG 2 cut(s) 164, 1586
AgsI TTSAA 5 cut(s) 25, 187, 913, 1051, 1238
AjnI CCWGG 2 cut(s) 230, 1526
AleI CACNNNNGTG 1 cut(s) 1329
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 1268
AlwI GGATC 8 cut(s) 45, 206, 309, 935, 962, 1348, 1362, 1709
Ama87I CYCGRG 1 cut(s) 1670
AoxI GGCC 2 cut(s) 500, 783
ApeKI GCWGC 5 cut(s) 614, 1054, 1112, 1178, 1430
ApoI RAATTY 1 cut(s) 874
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 2 cut(s) 1194, 1727
AspLEI GCGC 4 cut(s) 70, 88, 882, 1635
AspS9I GGNCC 2 cut(s) 954, 1555
AsuHPI GGTGA 1 cut(s) 1349
AsuNHI GCTAGC 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 1670
AvaII GGWCC 2 cut(s) 954, 1555
BaeI ACNNNNGTAYC 4 cut(s) 143, 176, 1360, 1393
BanII GRGCYC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 5 cut(s) 626, 1066, 1099, 1165, 1417
BccI CCATC 9 cut(s) 46, 101, 377, 516, 575, 591, 802, 1126, 1672
BceAI ACGGC 1 cut(s) 1418
BcgI CGANNNNNNTGC 6 cut(s) 227, 261, 746, 780, 1373, 1407
BciT130I CCWGG 2 cut(s) 232, 1528
BciVI GTATCC 1 cut(s) 1361
BcoDI GTCTC 1 cut(s) 1268
BfaI CTAG 4 cut(s) 83, 504, 663, 1043
BfmI CTRYAG 1 cut(s) 1443
BfoI RGCGCY 1 cut(s) 89
BfrI CTTAAG 2 cut(s) 164, 1586
BfuI GTATCC 1 cut(s) 1361
BisI GCNGC 6 cut(s) 18, 615, 1055, 1113, 1179, 1431
BlsI GCNGC 6 cut(s) 19, 616, 1056, 1114, 1180, 1432
Bme1390I CCNGG 2 cut(s) 232, 1528
Bme18I GGWCC 2 cut(s) 954, 1555
BmeT110I CYCGRG 1 cut(s) 1670
BmgT120I GGNCC 2 cut(s) 954, 1555
BmrFI CCNGG 2 cut(s) 232, 1528
BmrI ACTGGG 2 cut(s) 353, 440
BmsI GCATC 5 cut(s) 20, 601, 754, 970, 1570
BmtI GCTAGC 1 cut(s) 86
BmuI ACTGGG 2 cut(s) 353, 440
BpmI CTGGAG 1 cut(s) 1440
BpuEI CTTGAG 1 cut(s) 1107
BsaJI CCNNGG 5 cut(s) 155, 786, 1434, 1527, 1671
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 951
Bse1I ACTGG 5 cut(s) 348, 435, 850, 865, 1414
Bse3DI GCAATG 4 cut(s) 308, 537, 1180, 1464
BseBI CCWGG 2 cut(s) 232, 1528
BseDI CCNNGG 5 cut(s) 155, 786, 1434, 1527, 1671
BseGI GGATG 7 cut(s) 112, 440, 661, 1277, 1312, 1603, 1627
BseLI CCNNNNNNNGG 2 cut(s) 431, 951
BseMI GCAATG 4 cut(s) 308, 537, 1180, 1464
BseMII CTCAG 1 cut(s) 1215
BseNI ACTGG 5 cut(s) 348, 435, 850, 865, 1414
BseRI GAGGAG 3 cut(s) 719, 1023, 1688
BseXI GCAGC 5 cut(s) 626, 1066, 1099, 1165, 1417
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 1718
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 2 cut(s) 502, 785
BsiHKAI GWGCWC 1 cut(s) 398
BsiHKCI CYCGRG 1 cut(s) 1670
BslFI GGGAC 2 cut(s) 1230, 1667
BslI CCNNNNNNNGG 2 cut(s) 431, 951
BsmAI GTCTC 1 cut(s) 1268
BsmFI GGGAC 2 cut(s) 1230, 1667
BsmI GAATGC 2 cut(s) 882, 1462
BsnI GGCC 2 cut(s) 502, 785
BsoBI CYCGRG 1 cut(s) 1670
Bsp1286I GDGCHC 1 cut(s) 398
BspACI CCGC 4 cut(s) 17, 333, 415, 1471
BspANI GGCC 2 cut(s) 502, 785
BspCNI CTCAG 1 cut(s) 1216
BspFNI CGCG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 1708
BspMAI CTGCAG 1 cut(s) 1447
BspOI GCTAGC 1 cut(s) 86
BspPI GGATC 8 cut(s) 45, 206, 309, 935, 962, 1348, 1362, 1709
BspTI CTTAAG 2 cut(s) 164, 1586
BsrBI CCGCTC 1 cut(s) 417
BsrDI GCAATG 4 cut(s) 308, 537, 1180, 1464
BsrI ACTGG 5 cut(s) 348, 435, 850, 865, 1414
BssECI CCNNGG 5 cut(s) 155, 786, 1434, 1527, 1671
BssT1I CCWWGG 2 cut(s) 155, 786
Bst2UI CCWGG 2 cut(s) 232, 1528
Bst4CI ACNGT 4 cut(s) 868, 1137, 1221, 1400
Bst6I CTCTTC 3 cut(s) 978, 1296, 1482
BstAFI CTTAAG 2 cut(s) 164, 1586
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 7 cut(s) 84, 90, 1038, 1110, 1252, 1471, 1497
BstDEI CTNAG 1 cut(s) 1224
BstDSI CCRYGG 1 cut(s) 1434
BstF5I GGATG 7 cut(s) 112, 440, 661, 1277, 1312, 1603, 1627
BstFNI CGCG 1 cut(s) 333
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 4 cut(s) 70, 88, 882, 1635
BstMAI GTCTC 1 cut(s) 1268
BstMWI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 623, 1076, 1436, 1466
BstNI CCWGG 2 cut(s) 232, 1528
BstNSI RCATGY 3 cut(s) 288, 535, 1108
BstSCI CCNGG 2 cut(s) 230, 1526
BstSFI CTRYAG 1 cut(s) 1443
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 5 cut(s) 626, 1066, 1099, 1165, 1417
BstX2I RGATCY 2 cut(s) 211, 967
BstYI RGATCY 2 cut(s) 211, 967
BsuI GTATCC 1 cut(s) 1361
BsuRI GGCC 2 cut(s) 502, 785
BtgI CCRYGG 1 cut(s) 1434
BtsCI GGATG 7 cut(s) 112, 440, 661, 1277, 1312, 1603, 1627
BtsIMutI CAGTG 3 cut(s) 341, 858, 1407
Cac8I GCNNGC 7 cut(s) 84, 90, 1038, 1110, 1252, 1471, 1497
CciI TCATGA 1 cut(s) 1708
CfoI GCGC 4 cut(s) 70, 88, 882, 1635
Cfr13I GGNCC 2 cut(s) 954, 1555
Csp6I GTAC 2 cut(s) 235, 271
CviQI GTAC 2 cut(s) 235, 271
DdeI CTNAG 1 cut(s) 1224
DrdI GACNNNNNNGTC 1 cut(s) 1553
DseDI GACNNNNNNGTC 1 cut(s) 1553
Eam1104I CTCTTC 3 cut(s) 978, 1296, 1482
EarI CTCTTC 3 cut(s) 978, 1296, 1482
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 155, 786
Eco147I AGGCCT 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 954, 1555
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 5 cut(s) 114, 698, 791, 1206, 1506
Eco88I CYCGRG 1 cut(s) 1670
EcoICRI GAGCTC 1 cut(s) 396
EcoRII CCWGG 2 cut(s) 230, 1526
EcoT14I CCWWGG 2 cut(s) 155, 786
EcoT22I ATGCAT 2 cut(s) 310, 1072
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 2 cut(s) 155, 786
FalI AAGNNNNNCTT 4 cut(s) 957, 989, 1179, 1211
FaqI GGGAC 2 cut(s) 1230, 1667
FauI CCCGC 1 cut(s) 1478
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 6 cut(s) 18, 615, 1055, 1113, 1179, 1431
FokI GGATG 7 cut(s) 119, 427, 668, 1264, 1319, 1610, 1634
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 18, 615, 1055, 1113, 1179, 1431
FspBI CTAG 4 cut(s) 83, 504, 663, 1043
FspI TGCGCA 1 cut(s) 881
GlaI GCGC 4 cut(s) 69, 87, 881, 1634
GluI GCNGC 6 cut(s) 18, 615, 1055, 1113, 1179, 1431
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 1440
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 2 cut(s) 502, 785
HhaI GCGC 4 cut(s) 70, 88, 882, 1635
Hin6I GCGC 4 cut(s) 68, 86, 880, 1633
HinP1I GCGC 4 cut(s) 68, 86, 880, 1633
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 3 cut(s) 404, 913, 1702
HphI GGTGA 1 cut(s) 1349
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 8 cut(s) 45, 211, 771, 872, 1200, 1225, 1395, 1486
Hpy188III TCNNGA 6 cut(s) 887, 917, 977, 1043, 1670, 1709
Hpy8I GTNNAC 1 cut(s) 793
Hpy99I CGWCG 1 cut(s) 1550
HpyAV CCTTC 9 cut(s) 271, 660, 673, 725, 766, 1195, 1292, 1345, 1585
HpyCH4III ACNGT 4 cut(s) 868, 1137, 1221, 1400
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 623, 1076, 1436, 1466
HpyF3I CTNAG 1 cut(s) 1224
HspAI GCGC 4 cut(s) 68, 86, 880, 1633
LmnI GCTCC 5 cut(s) 281, 515, 1120, 1204, 1504
Lsp1109I GCAGC 5 cut(s) 626, 1066, 1099, 1165, 1417
LweI GCATC 5 cut(s) 20, 601, 754, 970, 1570
MaeI CTAG 4 cut(s) 83, 504, 663, 1043
MaeIII GTNAC 1 cut(s) 1663
MbiI CCGCTC 1 cut(s) 417
MboII GAAGA 8 cut(s) 758, 965, 977, 1199, 1313, 1499, 1520, 1625
MflI RGATCY 2 cut(s) 211, 967
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 6 cut(s) 56, 217, 874, 925, 1130, 1389
MmeI TCCRAC 2 cut(s) 681, 1526
Mph1103I ATGCAT 2 cut(s) 310, 1072
MroXI GAANNNNTTC 2 cut(s) 1194, 1727
MseI TTAA 7 cut(s) 120, 165, 324, 1149, 1158, 1587, 1647
MslI CAYNNNNRTG 2 cut(s) 1103, 1329
MspA1I CMGCKG 3 cut(s) 17, 92, 459
MspCI CTTAAG 2 cut(s) 164, 1586
MspR9I CCNGG 2 cut(s) 232, 1528
Mva1269I GAATGC 2 cut(s) 882, 1462
MvaI CCWGG 2 cut(s) 232, 1528
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 7 cut(s) 17, 74, 83, 623, 1076, 1436, 1466
NdeI CATATG 1 cut(s) 148
NheI GCTAGC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 881
NsiI ATGCAT 2 cut(s) 310, 1072
NspI RCATGY 3 cut(s) 288, 535, 1108
OliI CACNNNNGTG 1 cut(s) 1329
PagI TCATGA 1 cut(s) 1708
PceI AGGCCT 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 958
PctI GAATGC 2 cut(s) 882, 1462
PdmI GAANNNNTTC 2 cut(s) 1194, 1727
PfeI GAWTC 3 cut(s) 404, 913, 1702
PflFI GACNNNGTC 1 cut(s) 1553
PkrI GCNGC 6 cut(s) 19, 616, 1056, 1114, 1180, 1432
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 230, 1526
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 230, 1526
PspPI GGNCC 2 cut(s) 954, 1555
PstI CTGCAG 1 cut(s) 1447
PsuI RGATCY 2 cut(s) 211, 967
PsyI GACNNNGTC 1 cut(s) 1553
PvuII CAGCTG 2 cut(s) 92, 459
RsaI GTAC 2 cut(s) 236, 272
RsaNI GTAC 2 cut(s) 235, 271
RseI CAYNNNNRTG 2 cut(s) 1103, 1329
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 7 cut(s) 120, 165, 324, 1149, 1158, 1587, 1647
SatI GCNGC 6 cut(s) 18, 615, 1055, 1113, 1179, 1431
Sau96I GGNCC 2 cut(s) 954, 1555
ScrFI CCNGG 2 cut(s) 232, 1528
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 5 cut(s) 20, 601, 754, 970, 1570
SfcI CTRYAG 1 cut(s) 1443
SinI GGWCC 2 cut(s) 954, 1555
SmiMI CAYNNNNRTG 2 cut(s) 1103, 1329
SmlI CTYRAG 3 cut(s) 164, 1122, 1586
SmoI CTYRAG 3 cut(s) 164, 1122, 1586
Sse9I AATT 6 cut(s) 56, 217, 874, 925, 1130, 1389
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 4 cut(s) 17, 333, 415, 1471
SspI AATATT 1 cut(s) 1063
SspMI CTAG 4 cut(s) 83, 504, 663, 1043
SstI GAGCTC 1 cut(s) 398
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 230, 1526
StyI CCWWGG 2 cut(s) 155, 786
TaaI ACNGT 4 cut(s) 868, 1137, 1221, 1400
TaqI TCGA 1 cut(s) 1690
TaqII GACCGA 1 cut(s) 942
TasI AATT 6 cut(s) 56, 217, 874, 925, 1130, 1389
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 3 cut(s) 404, 913, 1702
Tru1I TTAA 7 cut(s) 120, 165, 324, 1149, 1158, 1587, 1647
Tru9I TTAA 7 cut(s) 120, 165, 324, 1149, 1158, 1587, 1647
TscAI CASTG 3 cut(s) 348, 865, 1414
TseI GCWGC 5 cut(s) 614, 1054, 1112, 1178, 1430
TspGWI ACGGA 1 cut(s) 1625
TspRI CASTG 3 cut(s) 348, 865, 1414
Tth111I GACNNNGTC 1 cut(s) 1553
Vha464I CTTAAG 2 cut(s) 164, 1586
VpaK11BI GGWCC 2 cut(s) 954, 1555
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 874
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 3 cut(s) 288, 535, 1108
XmnI GAANNNNTTC 2 cut(s) 1194, 1727
XspI CTAG 4 cut(s) 83, 504, 663, 1043
Zsp2I ATGCAT 2 cut(s) 310, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.