Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034700.1

Orthogroup ID

OG0001496

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 537

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034700.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

cttcggaatcttgatgtcaactctgcgcattatgatccgaaaagccggtccatgcgtgaaaaccctaatccagatgcagatccgaacgagcagttttacgtgggagataatgtatggagaaacactggtcaagctctggagttcgggcagatgaacattcatgctttggaagcatttgagaggggacaagatgttcacatgcaagcagctccatcccaagctgagtttctttataaaaattataaggcgattaaggagagattgacttcacggacgaattgcaccattctagaaaagtatggcaatgcagctagtggagaagaacttcctaaggagcttctactgggacagagcgaaagagatgttgaatacgatcgatctgggaggatcatcaagggcaaggaagaagcggttccgaggagcaaatatgcagaagatgtcagtatcaacaatcatacttgtgtgtggggttcgtggtggaaaggtcaccaatggggctacaagtgttgtaagcagtttatgcgaaacagttattgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Slu7

Protein Analysis

179

Amino Acids

20.7

Weight (kDa)

6.59

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65660 AT3G45950 AT4G37120
fragaria_vesca	FvH4_2g21480 FvH4_4g03640 FvH4_5g13320
malus_domestica	MD05G1197300.v1.1 MD10G1184000.v1.1 MD16G1219100.v1.1
prunus_persica	Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.1G039500_v2.0.a1 Prupe.8G223800_v2.0.a1
pyrus_communis	pycom05g18440 pycom10g15930 pycom16g18260
rosa_chinensis	RchiOBHm_Chr4g0393021 RchiOBHm_Chr6g0288131 RchiOBHm_Chr7g0183821
rosa_laevigata	RLG00000005020 RLG00000009774
rosa_multiflora	Rmu_sc0003610.1_g000043 Rmu_sc0010766.1_g000006 Rmu_sc0034700.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270180 Rroxscaffold_5G00338120 Rroxscaffold_7G00180470
rosa_rugosa	Rorug04G0002700 Rorug04G0002800 Rorug06G0194300 Rorug06G0460700 Rorug06G0460800
rosa_samantha	Rh4AG045400 Rh4BG041400 Rh4CG049000 Rh4DG043300 Rh6AG304700 Rh6BG310700 Rh6CG318800 Rh6DG303700 Rh7AG061400 Rh7BG061500 Rh7CG063100 Rh7DG061500
rosa_wichuraiana	Rw4G003580 Rw6G026360 Rw7G005100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	234, 243
Acc16I	TGCGCA	1 cut(s)	27
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	3 cut(s)	29, 74, 395
AgsI	TTSAA	1 cut(s)	368
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	5 cut(s)	134, 209, 221, 311, 337
AluI	AGCT	5 cut(s)	134, 209, 221, 311, 337
AlwI	GGATC	3 cut(s)	29, 74, 395
ApeKI	GCWGC	2 cut(s)	206, 308
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	2 cut(s)	324, 411
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	48
AxyI	CCTNAGG	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	218, 320
BccI	CCATC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	290, 312
BisI	GCNGC	2 cut(s)	207, 309
BlsI	GCNGC	2 cut(s)	208, 310
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	130, 348
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	212
BseJI	GATNNNNATC	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	130, 348
BseRI	GAGGAG	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	218, 320
Bsh1285I	CGRYCG	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	376
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	2 cut(s)	198, 360
BsmFI	GGGAC	2 cut(s)	198, 360
Bsp143I	GATC	5 cut(s)	34, 79, 373, 377, 387
BspACI	CCGC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	3 cut(s)	29, 74, 395
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	130, 348
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	5 cut(s)	34, 79, 373, 377, 387
Bst4CI	ACNGT	1 cut(s)	530
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	222, 330
BstEII	GGTNACC	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	5 cut(s)	37, 82, 376, 380, 390
BstMBI	GATC	5 cut(s)	34, 79, 373, 377, 387
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 520
BstNSI	RCATGY	1 cut(s)	202
BstPI	GGTNACC	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	218, 320
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	376
Bsu36I	CCTNAGG	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	48
ClaI	ATCGAT	1 cut(s)	376
CviAII	CATG	3 cut(s)	52, 161, 199
CviJI	RGCY	7 cut(s)	45, 134, 209, 221, 311, 337, 498
CviKI_1	RGCY	7 cut(s)	45, 134, 209, 221, 311, 337, 498
DdeI	CTNAG	2 cut(s)	222, 330
DpnI	GATC	5 cut(s)	36, 81, 375, 379, 389
DpnII	GATC	5 cut(s)	34, 79, 373, 377, 387
Eco47I	GGWCC	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	485
FaeI	CATG	3 cut(s)	55, 164, 202
FaqI	GGGAC	2 cut(s)	198, 360
FatI	CATG	3 cut(s)	51, 160, 198
Fnu4HI	GCNGC	2 cut(s)	207, 309
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	207, 309
FspBI	CTAG	2 cut(s)	290, 312
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	207, 309
GsuI	CTGGAG	1 cut(s)	158
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	55, 164, 202
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	19, 196
Hpy188I	TCNGA	4 cut(s)	6, 39, 84, 417
Hpy188III	TCNNGA	4 cut(s)	11, 71, 137, 290
Hpy8I	GTNNAC	2 cut(s)	19, 196
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	77, 202, 282, 308, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 520
HpyF3I	CTNAG	2 cut(s)	222, 330
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	55, 164, 202
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	5 cut(s)	34, 79, 373, 377, 387
LmnI	GCTCC	3 cut(s)	214, 334, 420
LpnPI	CCDG	6 cut(s)	59, 84, 111, 122, 329, 366
Lsp1109I	GCAGC	2 cut(s)	218, 320
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	2 cut(s)	290, 312
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	5 cut(s)	36, 81, 375, 379, 389
MboI	GATC	5 cut(s)	34, 79, 373, 377, 387
MboII	GAAGA	3 cut(s)	332, 416, 446
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	2 cut(s)	238, 277
MnlI	CCTC	3 cut(s)	174, 378, 411
MroXI	GAANNNNTTC	2 cut(s)	324, 411
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	170, 520
NdeII	GATC	5 cut(s)	34, 79, 373, 377, 387
NlaIII	CATG	3 cut(s)	55, 164, 202
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	485
NsbI	TGCGCA	1 cut(s)	27
NspI	RCATGY	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	324, 411
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	208, 310
Ple19I	CGATCG	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	100
PsiI	TTATAA	2 cut(s)	234, 243
PspEI	GGTNACC	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	79
PvuI	CGATCG	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	207, 309
Sau3AI	GATC	5 cut(s)	34, 79, 373, 377, 387
Sau96I	GGNCC	1 cut(s)	48
SetI	ASST	7 cut(s)	102, 136, 211, 223, 313, 339, 487
SfaNI	GCATC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	238, 277
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	2 cut(s)	290, 312
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	376
TasI	AATT	2 cut(s)	238, 277
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	206, 308
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	149, 167
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	48
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	202
XmnI	GAANNNNTTC	2 cut(s)	324, 411
XspI	CTAG	2 cut(s)	290, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.