FvH4_4g03640

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
3245996 .. 3250705
4710 bp
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UTR
Exon/CDS
Intron
FvH4_4g03640.t1

Sequence Viewer

Length: 1563 bp
ATGGCTACGGCGTCAGTGGCTTTCAAGTCGAGGGAGGACCATAGGAAGCAAATTGAATCGGAGGAAGCGCGTAAAGCTGGGCTAGCACCAGCTGAAGTTGATGAAGATGGGAAGGAGATCAATCCTCATATTCCGCAGTTTATGTCATCTGCTCCTTGGTATCTCAATGCTGAGAAGCCGAGCTTGAAACATCAAAGGAAGTGGAAACCAGATCCTTTTACAAAATCTTGGTATGACAGAGGTGCAAAGATATTTTTGGCTGATAAGTACGGACAGGGGCTTGTGAAAAGGAATTACGAGATTGCTTATGATGTTATGAGCTCTTACGTTGTGTATCCACCCATGTCCTTCACTGTGGATACAACTTGGACGGGTCAGTTTGCTTGTTGTTCTTCGTCACCCTGTGGGGCCATGACACATAATGTAAAGTCCTGCATGGAGTGGCCTAGAAAGAAAGGAGCAAAATGGATTAGCATGCACATTGCGCCTGATGAAAAGATACAGATTTTTAAGCTAGATTATGATGGCAAAAGGGATAGATGGAATGGGTTTGATGCATCAACTTATGCTCCTGTCATTGAGAGATACGAAGCAAGGGATGAGGCAAGAAGGAAATTCCTAAAAGAGCAGCAGCTGAAAAGGTTAGAGGAGAAAAATAGTAAGCAAAGTGGAGAGGGGGAGGTCATTGATGATGATGAATATGAAGATGTTCTGAAGGTCGATGAGGCCAAGGTTGATGAAAGCAAACAAATGGATTTTGCAAAGGTTGAGAAGCGTGTTCGCACAACCAGTGGTGGAAGCACAGGAACTGTCAGAAATTTGCGTATTCGGGAGGACACAGCCAAGTATCTTTTGAACCTTGATGTCAACTCTGCTTATTATGATCCCAAAACTCGGTCCATGCGTGAAGATCCTCTTCCTGATGCTGACCCGAATGAGAAGTTTTATGCAGGAGATAACAGATACAGAGCGAGTGGGCAAGCTTTAGAGTTCAAGCAGCTCAATATTCATGCATGGGAAGCATTTGAAAAAGGACAAGACGTTCACTTGCAAGCTGCTCCATCTCAAGCAGAATTGCTTTTTAAGAACTATAAGGAGACATCCTTGCCAAAAAGCAAGTATGAGGAGGATGTTTACATCAATAACCACACAAGTGTCTGGGGGTCATGGTGGAAGGATTACCAATGGGGCTACAAGTGTTGCAAGCAAACAATTCGTAACAGTTATTGCACTGGTGTTGCTGGAATTGAGGCAGCTGAGTCAGCTGCCAATCTAATGAAGGCAAATATTGACCGCAAAGCAGCCTCTGAAGAGACCATAGCTCCAACTGAAGAGAAAAGGCTTGCTACTTGGGGAGCTGATATACCTGAAGACTTGGTGCTTGACCAGAAAAAACTCGGTGATGCTCTTAAGAAGGAGGATGAGAGAAGGAAGGAAGAGAAGGAAGGAAGAGAGTGCAAATATAATGTCACATGGAATGATGAGGTTACTCCGGAGGAGATGGAGGCATATCGGATGAAAAAGGTACATCATGATGACCCGATGAAAGATTTTGTGCACTAG

Protein Analysis

521

Amino Acids

60.11

Weight (kDa)

5.92

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Slu7 PF11708 172 - 367 4e-63 Pre-mRNA splicing Prp18-interacting factor
Slu7 PF11708 366 - 389 3e-07 Pre-mRNA splicing Prp18-interacting factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 70
AccIII TCCGGA 1 cut(s) 1492
AciI CCGC 2 cut(s) 134, 1294
AclWI GGATC 3 cut(s) 206, 878, 905
AcsI RAATTY 2 cut(s) 614, 817
AcuI CTGAAG 5 cut(s) 114, 734, 1329, 1350, 1389
AcyI GRCGYC 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 404
AfaI GTAC 2 cut(s) 269, 1527
AfiI CCNNNNNNNGG 1 cut(s) 894
AflII CTTAAG 1 cut(s) 1409
AgsI TTSAA 6 cut(s) 25, 56, 187, 856, 994, 1028
AleI CACNNNNGTG 1 cut(s) 1152
AloI GAACNNNNNNTCC 2 cut(s) 1026, 1058
Alw21I GWGCWC 2 cut(s) 323, 1560
Alw26I GTCTC 2 cut(s) 1091, 1307
Alw44I GTGCAC 1 cut(s) 1556
AlwI GGATC 3 cut(s) 206, 878, 905
AlwNI CAGNNNCTG 3 cut(s) 634, 809, 1307
Aor13HI TCCGGA 1 cut(s) 1492
AoxI GGCC 3 cut(s) 408, 443, 726
ApaLI GTGCAC 1 cut(s) 1556
ApeKI GCWGC 7 cut(s) 628, 631, 997, 1055, 1253, 1265, 1301
ApoI RAATTY 2 cut(s) 614, 817
ArsI GACNNNNNNTTYG 2 cut(s) 1452, 1484
Asp700I GAANNNNTTC 1 cut(s) 708
AspLEI GCGC 2 cut(s) 70, 487
AspS9I GGNCC 3 cut(s) 37, 408, 897
AsuHPI GGTGA 2 cut(s) 390, 1412
AsuNHI GCTAGC 1 cut(s) 82
AvaII GGWCC 2 cut(s) 37, 897
BaeGI GKGCMC 1 cut(s) 1560
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 1377
Bbv12I GWGCWC 2 cut(s) 323, 1560
BbvI GCAGC 7 cut(s) 640, 643, 1009, 1042, 1252, 1265, 1313
BccI CCATC 5 cut(s) 101, 518, 534, 1069, 1495
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 1196, 1230
BciVI GTATCC 2 cut(s) 345, 352
BcoDI GTCTC 2 cut(s) 1091, 1307
BfaI CTAG 4 cut(s) 83, 447, 515, 1561
BfrI CTTAAG 1 cut(s) 1409
BfuI GTATCC 2 cut(s) 345, 352
BisI GCNGC 7 cut(s) 629, 632, 998, 1056, 1254, 1266, 1302
BlsI GCNGC 7 cut(s) 630, 633, 999, 1057, 1255, 1267, 1303
Bme18I GGWCC 2 cut(s) 37, 897
BmgT120I GGNCC 3 cut(s) 37, 408, 897
BmiI GGNNCC 1 cut(s) 409
BmsI GCATC 4 cut(s) 544, 566, 913, 1393
BmtI GCTAGC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 1377
BpuEI CTTGAG 1 cut(s) 1050
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 1307
BsaJI CCNNGG 2 cut(s) 155, 729
BsaWI WCCGGW 1 cut(s) 1492
BsaXI ACNNNNNCTCC 4 cut(s) 553, 583, 1306, 1336
Bsc4I CCNNNNNNNGG 1 cut(s) 894
Bse1I ACTGG 2 cut(s) 789, 1237
Bse3DI GCAATG 1 cut(s) 480
BseAI TCCGGA 1 cut(s) 1492
BseDI CCNNGG 2 cut(s) 155, 729
BseGI GGATG 5 cut(s) 604, 1100, 1135, 1426, 1521
BseLI CCNNNNNNNGG 1 cut(s) 894
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 2 cut(s) 162, 1248
BseNI ACTGG 2 cut(s) 789, 1237
BseRI GAGGAG 3 cut(s) 662, 1139, 1511
BseSI GKGCMC 1 cut(s) 1560
BseXI GCAGC 7 cut(s) 640, 643, 1009, 1042, 1252, 1265, 1313
BseYI CCCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 410, 445, 728
BsiHKAI GWGCWC 2 cut(s) 323, 1560
BsiSI CCGG 1 cut(s) 1493
BslI CCNNNNNNNGG 1 cut(s) 894
BsmAI GTCTC 2 cut(s) 1091, 1307
BsnI GGCC 3 cut(s) 410, 445, 728
Bso31I GGTCTC 1 cut(s) 1307
Bsp1286I GDGCHC 2 cut(s) 323, 1560
Bsp13I TCCGGA 1 cut(s) 1492
Bsp143I GATC 4 cut(s) 117, 211, 883, 910
BspACI CCGC 2 cut(s) 134, 1294
BspANI GGCC 3 cut(s) 410, 445, 728
BspCNI CTCAG 2 cut(s) 163, 1249
BspEI TCCGGA 1 cut(s) 1492
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 1531
BspLI GGNNCC 1 cut(s) 409
BspOI GCTAGC 1 cut(s) 86
BspPI GGATC 3 cut(s) 206, 878, 905
BspTI CTTAAG 1 cut(s) 1409
BspTNI GGTCTC 1 cut(s) 1307
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 2 cut(s) 789, 1237
BssECI CCNNGG 2 cut(s) 155, 729
BssMI GATC 4 cut(s) 117, 211, 883, 910
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 155, 729
Bst4CI ACNGT 3 cut(s) 355, 811, 1223
Bst6I CTCTTC 5 cut(s) 921, 1305, 1326, 1431, 1444
BstACI GRCGYC 1 cut(s) 11
BstAFI CTTAAG 1 cut(s) 1409
BstC8I GCNNGC 6 cut(s) 84, 476, 981, 1053, 1205, 1344
BstDEI CTNAG 2 cut(s) 171, 1257
BstF5I GGATG 5 cut(s) 604, 1100, 1135, 1426, 1521
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 2 cut(s) 70, 487
BstKTI GATC 4 cut(s) 120, 214, 886, 913
BstMAI GTCTC 2 cut(s) 1091, 1307
BstMBI GATC 4 cut(s) 117, 211, 883, 910
BstMWI GCNNNNNNNGC 6 cut(s) 17, 74, 83, 484, 1019, 1262
BstNSI RCATGY 1 cut(s) 478
BstSLI GKGCMC 1 cut(s) 1560
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 7 cut(s) 640, 643, 1009, 1042, 1252, 1265, 1313
BstV2I GAAGAC 1 cut(s) 1377
BstX2I RGATCY 2 cut(s) 211, 910
BstYI RGATCY 2 cut(s) 211, 910
BsuI GTATCC 2 cut(s) 345, 352
BsuRI GGCC 3 cut(s) 410, 445, 728
BtsCI GGATG 5 cut(s) 604, 1100, 1135, 1426, 1521
BtsIMutI CAGTG 4 cut(s) 21, 351, 796, 1230
Cac8I GCNNGC 6 cut(s) 84, 476, 981, 1053, 1205, 1344
CaiI CAGNNNCTG 3 cut(s) 634, 809, 1307
CciI TCATGA 1 cut(s) 1531
CfoI GCGC 2 cut(s) 70, 487
Cfr13I GGNCC 3 cut(s) 37, 408, 897
Csp6I GTAC 2 cut(s) 268, 1526
CspCI CAANNNNNGTGG 2 cut(s) 182, 217
CviQI GTAC 2 cut(s) 268, 1526
DdeI CTNAG 2 cut(s) 171, 1257
DpnI GATC 4 cut(s) 119, 213, 885, 912
DpnII GATC 4 cut(s) 117, 211, 883, 910
DraIII CACNNNGTG 1 cut(s) 404
Eam1104I CTCTTC 5 cut(s) 921, 1305, 1326, 1431, 1444
EarI CTCTTC 5 cut(s) 921, 1305, 1326, 1431, 1444
Ecl136II GAGCTC 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 155, 729
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 1307
Eco47I GGWCC 2 cut(s) 37, 897
Eco53kI GAGCTC 1 cut(s) 321
Eco57I CTGAAG 5 cut(s) 114, 734, 1329, 1350, 1389
EcoICRI GAGCTC 1 cut(s) 321
EcoT14I CCWWGG 2 cut(s) 155, 729
EcoT22I ATGCAT 2 cut(s) 559, 1015
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 2 cut(s) 155, 729
FalI AAGNNNNNCTT 4 cut(s) 167, 199, 900, 932
Fnu4HI GCNGC 7 cut(s) 629, 632, 998, 1056, 1254, 1266, 1302
FokI GGATG 5 cut(s) 611, 1087, 1142, 1433, 1528
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 7 cut(s) 629, 632, 998, 1056, 1254, 1266, 1302
FspBI CTAG 4 cut(s) 83, 447, 515, 1561
GlaI GCGC 2 cut(s) 69, 486
GluI GCNGC 7 cut(s) 629, 632, 998, 1056, 1254, 1266, 1302
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 3 cut(s) 410, 445, 728
HapII CCGG 1 cut(s) 1493
HhaI GCGC 2 cut(s) 70, 487
Hin1I GRCGYC 1 cut(s) 11
Hin6I GCGC 2 cut(s) 68, 485
HinP1I GCGC 2 cut(s) 68, 485
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 1 cut(s) 981
HinfI GANTC 2 cut(s) 56, 1259
HpaII CCGG 1 cut(s) 1493
HphI GGTGA 2 cut(s) 390, 1412
Hpy166II GTNNAC 4 cut(s) 868, 1045, 1135, 1558
Hpy188I TCNGA 5 cut(s) 61, 714, 815, 1309, 1515
Hpy188III TCNNGA 4 cut(s) 830, 920, 1493, 1532
Hpy8I GTNNAC 4 cut(s) 868, 1045, 1135, 1558
HpyCH4III ACNGT 3 cut(s) 355, 811, 1223
HpyCH4IV ACGT 2 cut(s) 327, 1041
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 74, 83, 484, 1019, 1262
HpyF3I CTNAG 2 cut(s) 171, 1257
HpySE526I ACGT 2 cut(s) 327, 1041
Hsp92I GRCGYC 1 cut(s) 11
HspAI GCGC 2 cut(s) 68, 485
Kpn2I TCCGGA 1 cut(s) 1492
Kzo9I GATC 4 cut(s) 117, 211, 883, 910
LmnI GCTCC 6 cut(s) 157, 458, 574, 1063, 1327, 1355
Lsp1109I GCAGC 7 cut(s) 640, 643, 1009, 1042, 1252, 1265, 1313
LweI GCATC 4 cut(s) 544, 566, 913, 1393
MaeI CTAG 4 cut(s) 83, 447, 515, 1561
MaeII ACGT 2 cut(s) 327, 1041
MaeIII GTNAC 4 cut(s) 396, 1217, 1468, 1486
MalI GATC 4 cut(s) 119, 213, 885, 912
MboI GATC 4 cut(s) 117, 211, 883, 910
MflI RGATCY 2 cut(s) 211, 910
MhlI GDGCHC 2 cut(s) 323, 1560
MluCI AATT 7 cut(s) 51, 292, 614, 817, 1073, 1212, 1245
MlyI GAGTC 1 cut(s) 1268
MmeI TCCRAC 1 cut(s) 1349
Mph1103I ATGCAT 2 cut(s) 559, 1015
MroI TCCGGA 1 cut(s) 1492
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 3 cut(s) 510, 1083, 1410
MslI CAYNNNNRTG 2 cut(s) 1152, 1533
MspA1I CMGCKG 4 cut(s) 92, 634, 1256, 1265
MspCI CTTAAG 1 cut(s) 1409
MspI CCGG 1 cut(s) 1493
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 6 cut(s) 17, 74, 83, 484, 1019, 1262
NdeII GATC 4 cut(s) 117, 211, 883, 910
NheI GCTAGC 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 396, 1468
NsiI ATGCAT 2 cut(s) 559, 1015
NspI RCATGY 1 cut(s) 478
OliI CACNNNNGTG 1 cut(s) 1152
PaeI GCATGC 1 cut(s) 478
PagI TCATGA 1 cut(s) 1531
PcsI WCGNNNNNNNCGW 1 cut(s) 901
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 7 cut(s) 630, 633, 999, 1057, 1255, 1267, 1303
PleI GAGTC 1 cut(s) 1267
PpsI GAGTC 1 cut(s) 1267
Psp124BI GAGCTC 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 3 cut(s) 37, 408, 897
PstNI CAGNNNCTG 3 cut(s) 634, 809, 1307
PsuI RGATCY 2 cut(s) 211, 910
PvuII CAGCTG 4 cut(s) 92, 634, 1256, 1265
RsaI GTAC 2 cut(s) 269, 1527
RsaNI GTAC 2 cut(s) 268, 1526
RseI CAYNNNNRTG 2 cut(s) 1152, 1533
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 510, 1083, 1410
SatI GCNGC 7 cut(s) 629, 632, 998, 1056, 1254, 1266, 1302
Sau3AI GATC 4 cut(s) 117, 211, 883, 910
Sau96I GGNCC 3 cut(s) 37, 408, 897
SchI GAGTC 1 cut(s) 1268
SduI GDGCHC 2 cut(s) 323, 1560
SfaNI GCATC 4 cut(s) 544, 566, 913, 1393
SinI GGWCC 2 cut(s) 37, 897
SmiMI CAYNNNNRTG 2 cut(s) 1152, 1533
SmlI CTYRAG 2 cut(s) 1065, 1409
SmoI CTYRAG 2 cut(s) 1065, 1409
SphI GCATGC 1 cut(s) 478
Sse9I AATT 7 cut(s) 51, 292, 614, 817, 1073, 1212, 1245
SsiI CCGC 2 cut(s) 134, 1294
SspI AATATT 2 cut(s) 1006, 1288
SspMI CTAG 4 cut(s) 83, 447, 515, 1561
SstI GAGCTC 1 cut(s) 323
StyI CCWWGG 2 cut(s) 155, 729
TaaI ACNGT 3 cut(s) 355, 811, 1223
TaiI ACGT 2 cut(s) 330, 1044
TaqI TCGA 2 cut(s) 29, 720
TaqII GACCGA 1 cut(s) 885
TasI AATT 7 cut(s) 51, 292, 614, 817, 1073, 1212, 1245
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 510, 1083, 1410
Tru9I TTAA 3 cut(s) 510, 1083, 1410
TscAI CASTG 4 cut(s) 21, 358, 796, 1237
TseFI GTSAC 2 cut(s) 396, 1468
TseI GCWGC 7 cut(s) 628, 631, 997, 1055, 1253, 1265, 1301
Tsp45I GTSAC 2 cut(s) 396, 1468
TspDTI ATGAA 9 cut(s) 117, 507, 711, 717, 753, 998, 1292, 1532, 1559
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 4 cut(s) 21, 358, 796, 1237
Vha464I CTTAAG 1 cut(s) 1409
VneI GTGCAC 1 cut(s) 1556
VpaK11BI GGWCC 2 cut(s) 37, 897
XapI RAATTY 2 cut(s) 614, 817
XceI RCATGY 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 4 cut(s) 83, 447, 515, 1561
Zsp2I ATGCAT 2 cut(s) 559, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.