Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Forward (+)

28408134 .. 28415118

Gene Structure 6985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3063 bp

ATGGGTGTACCGTCGTTTTACCGATGGTTGGCCGAGAAGTATCCTCTTTTAGTGGCGGATGTTATCGAGGAAGAGCCTGTTGAAATCGAAGGCATCAAGATTCCTGTGGATACTAGTAAACCTAACCCTAACAACCTCGAATACGATAATCTTTATCTCGACATGAACGGGATTATCCATCCTTGCTTTCACCCCGAAGATAGGCCATCTCCAACTACCTTTGAGGAGGTGTTTCAGTGTATGTTTGATTACATTGATAGGCTTTTCGTGATGGTACGGCCAAGGAAGTTACTCTATATGGCTATTGATGGTGTTGCTCCAAGAGCTAAAATGAATCAACAGAGGTCTAGACGGTTTAGATCTGCTAAAGATGCATCGGATGCAGCTGCTGAAGAAGAAAGGCTACGAGAGGAGTTTGAGAGGGAGGGTAGAAGACTCCCTCCTAAAGTGGACTCTCAAGTGTTTGATTCTAATGTTATTACACCTGGAACGGAATTCATGGGTGTTCTGTCTATTGCGCTGCAATATTATGTACACCTTAGACTTAATCATGATGTTGGTTGGAAAAATATCAAGGTCATCCTTTCAGACGCAAATGTTCCAGGTGAAGGAGAGCATAAAATCATGTCATACATTCGTCTTCAAAGAAATCTTCCTGGTTTTGACCCAAACACACGGCATTGCTTGTATGGACTGGATGCTGACCTGATTATGTTGGGCTTGGCGACCCATGAAGTTCATTTTTCAATTCTTCGAGAGGTGGTCTACACTCCTGGACAGCAGGAGAGGTGCTTCTTGTGTGGTCAAATGGGCCATTTTGCTTCAAATTGTGAAGGAAAACCAAAGAAGAGGGCAGGAGAATCTGATGAGAAAGGCGATGGAAATGATTTTGTCAAAAAGCCATATCAGTTTCTACATATCTGGGTTCTTAGAGAATACCTGGAGCTTGAGATGAGGATTCCCAACCCACCATTTGAGATTGATCTAGAGCGCATTGTTGATGATTTTATCTTCATATGTTTCTTTGTGGGCAATGACTTCTTACCACATATGCCCACATTAGAGATTCGAGAGGGTGCTATCAACTTGCTTATGGCTGTTTACAAGAAGGAATTTCGGTCTTTTGACGGCTACTTAACTGATGGGTGCAAGCCAAATTTAAAGAGGGTGGAACAGTTTATTCAGGCTGTTGGATCGTTTGAAGATAAGATATTTCAGAAAAGAGCCATGCAACATCAGAGGCAAGCGGAAAGAGTAAAGCGAGATAAAGCAGGTAAAGCGACAAAAAGAATGGATGATGAAGCTCCGACAGTTCAACCCGATCTTGTTCCGGTTGCACGATTTAGTGGTTCTCGACTTGCTTCGGCTCCTACACCTTCACCATTTCAGTCCAATGATGGAAGGTCTGCTCCACATCAAAAAGTTCGACGTTTATCTCCAGGATCCAGTGTTGGTGCTGCTATTGTTGATGTTGAGAACAGTCTCGAGTCTGATGAACGCGAGAACAAAGAAGAGCTAAAGACAAAGCTCAAGGAGTTAATCCGTGAGAAATCAGATGCGTTCAACTCAGATACTACTGAAGAGGATAAGGTGAAGCTAGGGCAACCTGGATGGAGAGAACGTTATTATGAAGAGAAGTTCTCAGTAGTAACCCCTGAAGAAATGGAAAGAGTCCGGAAGGATGTTGTTTTGAAGTACACAGAAGGCCTTTGTTGGGTCATGCATTACTACATGGAAGGTGTTTGCTCCTGGCAGTGGTTCTATCCTTACCACTATGCACCATTCGCTTCTGATCTGAAGGATTTGGGAGAGATGGATATTAAGTTCGAATTAGGAACTCCTTTTAAGCCTTTCAATCAACTTCTTGGGGTGTTCCCAGCTGCAAGTTCGCATGCACTTCCAGAGCGCTACAGGACCTTGATGACAGATCCCAACTCTCCTATCATTGATTTTTACCCAACTGATTTTGAAGTCGACATGAATGGGAAGCGTTTTTCCTGGCAGGGTATTGCTAAGCTGCCTTTCATTGATGAAAGGCGCCTACTAGAAGCTGTTTCTGAAGTGGAATTTACATTGACGGATGAAGAGAAGCGTAGAAACAGCAGGATGTGTGATATGCTTTTCATAGCAACGTCTCATCGTCTAGCTGAACTCGTCTTTTCACTTGACAATCACTGTCGGCAGTTAAGTGCCAGGGAGAGAGTAGACTTTAAGGTTAAGATCAAACCTAAGCTCAGTGATGGTATGAATGGCTACTTGACTCCGTGTTCAGGGGAAACTCACCCGCCAGTATTCAGGTCCCCAATGGAGGGTATGGAGGACATCTTGACCAACCAAGTCATATGTTGTATTTACAGACTTCCAGATGCACATGAACACATAACCAGGCCTCCTCCCGGTGTCATCTTCCCTAAGAAGACTGTGGACATAGGGGACTTGAAACCCCCACCTGCTCTGTGGCATGAAGACAATGGAAGGAGACCGATGCATAATAATCACGGGATGCATAATAATCATGGGATGCATAATAATCAGGGGAGGCAAAACCCACCTGGAAGTGTATCTGGAAGGCATCTGGGAAACGCAGCACATCGTCTTGTTTCCAACAGCTTACAGATGGGAACAGACCGATATCAGACACCAACAGATGTCCCGGCTCCTGGTTATGGCTACAATCCTCCGCAGTATGTTCCACCAATTCCTTACCAACATGGTGGCTATATGGCTCCACCTGGTGCACAAGGCTATGCTCAGCCAGCTCCTTACCAAAACCGAGGTGGGTACCAACCTCGTGGACCTAGTGGGAGATTCCCATCAGAGCCTTACCAGAGTCAATCACGGGAAGGTCAACATGCCTCTAGAGGAGGGGGGTATTCTGGTAATCATCAGAATCAACATCAACAACAACAATGGCATGGTCAAGGTGGGTCCGAGCAAAATAACCCACGAGGGTATAATGGTCAGCATCATCATCAACAAGGTGGTGACCATGACCGCAGAGGAAGAGGAAGAGGAAGTCATCATCATCATGATCAAGGCGGGAATCCTAGACATCGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

1020

Amino Acids

116.82

Weight (kDa)

6.53

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 253	5.7e-101	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	327 - 812	5.3e-166	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2458
Acc36I	ACCTGC	2 cut(s)	1262, 2458
Acc65I	GGTACC	1 cut(s)	2781
AccB1I	GGYRCC	2 cut(s)	2037, 2781
AccI	GTMKAC	3 cut(s)	765, 1974, 2205
AccII	CGCG	1 cut(s)	1500
AccIII	TCCGGA	1 cut(s)	1674
AciI	CCGC	6 cut(s)	56, 1247, 2285, 2681, 2995, 3039
AclI	AACGTT	1 cut(s)	1621
AclWI	GGATC	4 cut(s)	1201, 1437, 1450, 1922
AcoI	YGGCCR	2 cut(s)	30, 278
AcsI	RAATTY	4 cut(s)	494, 1112, 1156, 2066
AcuI	CTGAAG	5 cut(s)	411, 1599, 1677, 1817, 2079
AcyI	GRCGYC	1 cut(s)	2038
AdeI	CACNNNGTG	1 cut(s)	2735
AfaI	GTAC	5 cut(s)	9, 276, 534, 1697, 2783
AfeI	AGCGCT	1 cut(s)	1907
AhlI	ACTAGT	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	1808, 1840
Alw21I	GWGCWC	1 cut(s)	2740
Alw26I	GTCTC	3 cut(s)	1487, 2139, 2473
Alw44I	GTGCAC	1 cut(s)	2736
AlwI	GGATC	4 cut(s)	1201, 1437, 1450, 1922
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	1484
Aor13HI	TCCGGA	1 cut(s)	1674
Aor51HI	AGCGCT	1 cut(s)	1907
AoxI	GGCC	6 cut(s)	30, 203, 278, 811, 1705, 2387
ApaLI	GTGCAC	1 cut(s)	2736
ApeKI	GCWGC	7 cut(s)	383, 386, 520, 1457, 1880, 2017, 2585
ApoI	RAATTY	4 cut(s)	494, 1112, 1156, 2066
Asp718I	GGTACC	1 cut(s)	2781
AspLEI	GCGC	4 cut(s)	520, 993, 1908, 2040
AspS9I	GGNCC	5 cut(s)	811, 1914, 2298, 2795, 2928
AsuC2I	CCSGG	2 cut(s)	2397, 2654
AsuHPI	GGTGA	6 cut(s)	182, 617, 1371, 1603, 2273, 2996
AsuII	TTCGAA	1 cut(s)	1827
AvaI	CYCGRG	1 cut(s)	1484
AvaII	GGWCC	4 cut(s)	1914, 2298, 2795, 2928
BaeGI	GKGCMC	1 cut(s)	2740
BamHI	GGATCC	1 cut(s)	1442
BanI	GGYRCC	2 cut(s)	2037, 2781
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BauI	CACGAG	2 cut(s)	2790, 2946
BbsI	GAAGAC	4 cut(s)	439, 632, 2423, 2472
Bbv12I	GWGCWC	1 cut(s)	2740
BbvI	GCAGC	7 cut(s)	373, 395, 507, 1444, 1867, 2004, 2597
BceAI	ACGGC	3 cut(s)	293, 692, 1144
BciVI	GTATCC	2 cut(s)	51, 103
BclI	TGATCA	1 cut(s)	3031
BcnI	CCSGG	2 cut(s)	2397, 2654
BcoDI	GTCTC	3 cut(s)	1487, 2139, 2473
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	9 cut(s)	114, 348, 986, 1598, 2045, 2144, 2799, 2859, 3048
BfmI	CTRYAG	1 cut(s)	1909
BfoI	RGCGCY	2 cut(s)	1909, 2041
BfuAI	ACCTGC	2 cut(s)	1262, 2458
BfuI	GTATCC	2 cut(s)	51, 103
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	7 cut(s)	384, 387, 521, 1458, 1881, 2018, 2586
BlpI	GCTNAGC	2 cut(s)	2013, 2751
BlsI	GCNGC	7 cut(s)	385, 388, 522, 1459, 1882, 2019, 2587
Bme18I	GGWCC	4 cut(s)	1914, 2298, 2795, 2928
BmeT110I	CYCGRG	1 cut(s)	1484
BmgT120I	GGNCC	5 cut(s)	811, 1914, 2298, 2795, 2928
BmiI	GGNNCC	8 cut(s)	1368, 1444, 2039, 2300, 2658, 2727, 2783, 2929
BpiI	GAAGAC	4 cut(s)	439, 632, 2423, 2472
BplI	GAGNNNNNCTC	2 cut(s)	1625, 1657
BpmI	CTGGAG	2 cut(s)	962, 1422
Bpu10I	CCTNAGC	1 cut(s)	2229
Bpu1102I	GCTNAGC	2 cut(s)	2013, 2751
Bpu14I	TTCGAA	1 cut(s)	1827
BpuEI	CTTGAG	3 cut(s)	441, 968, 1514
BpuMI	CCSGG	2 cut(s)	2397, 2654
Bsa29I	ATCGAT	1 cut(s)	3055
BsaBI	GATNNNNATC	1 cut(s)	2812
BsaHI	GRCGYC	1 cut(s)	2038
BsaI	GGTCTC	1 cut(s)	2473
BsaJI	CCNNGG	3 cut(s)	281, 2193, 2773
BsaWI	WCCGGW	2 cut(s)	1330, 1674
BsaXI	ACNNNNNCTCC	4 cut(s)	1606, 1636, 2374, 2404
Bse1I	ACTGG	3 cut(s)	699, 1446, 2288
Bse3DI	GCAATG	2 cut(s)	679, 1039
Bse8I	GATNNNNATC	1 cut(s)	2812
BseAI	TCCGGA	1 cut(s)	1674
BseCI	ATCGAT	1 cut(s)	3055
BseDI	CCNNGG	3 cut(s)	281, 2193, 2773
BseJI	GATNNNNATC	1 cut(s)	2812
BseMI	GCAATG	2 cut(s)	679, 1039
BseMII	CTCAG	4 cut(s)	1581, 1656, 2248, 2765
BseNI	ACTGG	3 cut(s)	699, 1446, 2288
BseRI	GAGGAG	4 cut(s)	239, 425, 2382, 2877
BseSI	GKGCMC	1 cut(s)	2740
BseXI	GCAGC	7 cut(s)	373, 395, 507, 1444, 1867, 2004, 2597
BseYI	CCCAGC	1 cut(s)	1876
Bsh1236I	CGCG	1 cut(s)	1500
BshFI	GGCC	6 cut(s)	32, 205, 280, 813, 1707, 2389
BshNI	GGYRCC	2 cut(s)	2037, 2781
BshVI	ATCGAT	1 cut(s)	3055
BsiHKAI	GWGCWC	1 cut(s)	2740
BsiHKCI	CYCGRG	1 cut(s)	1484
BsiSI	CCGG	4 cut(s)	1331, 1675, 2397, 2654
BslFI	GGGAC	3 cut(s)	2284, 2447, 2636
BsmAI	GTCTC	3 cut(s)	1487, 2139, 2473
BsmBI	CGTCTC	1 cut(s)	2139
BsmFI	GGGAC	3 cut(s)	2284, 2447, 2636
BsnI	GGCC	6 cut(s)	32, 205, 280, 813, 1707, 2389
Bso31I	GGTCTC	1 cut(s)	2473
BsoBI	CYCGRG	1 cut(s)	1484
Bsp119I	TTCGAA	1 cut(s)	1827
Bsp1286I	GDGCHC	1 cut(s)	2740
Bsp13I	TCCGGA	1 cut(s)	1674
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
Bsp1720I	GCTNAGC	2 cut(s)	2013, 2751
BspACI	CCGC	6 cut(s)	56, 1247, 2285, 2681, 2995, 3039
BspANI	GGCC	6 cut(s)	32, 205, 280, 813, 1707, 2389
BspCNI	CTCAG	4 cut(s)	1580, 1655, 2247, 2764
BspDI	ATCGAT	1 cut(s)	3055
BspEI	TCCGGA	1 cut(s)	1674
BspFNI	CGCG	1 cut(s)	1500
BspHI	TCATGA	2 cut(s)	550, 3028
BspLI	GGNNCC	8 cut(s)	1368, 1444, 2039, 2300, 2658, 2727, 2783, 2929
BspMI	ACCTGC	2 cut(s)	1262, 2458
BspPI	GGATC	4 cut(s)	1201, 1437, 1450, 1922
BspQI	GCTCTTC	2 cut(s)	66, 1506
BspT104I	TTCGAA	1 cut(s)	1827
BspT107I	GGYRCC	2 cut(s)	2037, 2781
BspTNI	GGTCTC	1 cut(s)	2473
BsrDI	GCAATG	2 cut(s)	679, 1039
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	699, 1446, 2288
BssECI	CCNNGG	3 cut(s)	281, 2193, 2773
BssMI	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
BssNI	GRCGYC	1 cut(s)	2038
BssSI	CACGAG	2 cut(s)	2790, 2946
BssT1I	CCWWGG	1 cut(s)	281
Bst2BI	CACGAG	2 cut(s)	2790, 2946
Bst4CI	ACNGT	7 cut(s)	12, 354, 1176, 1312, 1481, 2177, 2422
Bst6I	CTCTTC	8 cut(s)	66, 842, 1506, 1575, 1626, 2079, 2998, 3004
BstACI	GRCGYC	1 cut(s)	2038
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	1827
BstC8I	GCNNGC	4 cut(s)	1151, 1245, 1893, 2757
BstDEI	CTNAG	9 cut(s)	539, 929, 1567, 1642, 2013, 2229, 2234, 2412, 2751
BstEII	GGTNACC	1 cut(s)	2984
BstFNI	CGCG	1 cut(s)	1500
BstH2I	RGCGCY	2 cut(s)	1909, 2041
BstHHI	GCGC	4 cut(s)	520, 993, 1908, 2040
BstKTI	GATC	9 cut(s)	362, 985, 1196, 1324, 1445, 1795, 1930, 2223, 3034
BstMAI	GTCTC	3 cut(s)	1487, 2139, 2473
BstMBI	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
BstMWI	GCNNNNNNNGC	6 cut(s)	323, 371, 380, 1277, 1784, 2756
BstNSI	RCATGY	2 cut(s)	1895, 2855
BstPI	GGTNACC	1 cut(s)	2984
BstSFI	CTRYAG	1 cut(s)	1909
BstSLI	GKGCMC	1 cut(s)	2740
BstUI	CGCG	1 cut(s)	1500
BstV1I	GCAGC	7 cut(s)	373, 395, 507, 1444, 1867, 2004, 2597
BstV2I	GAAGAC	4 cut(s)	439, 632, 2423, 2472
BstX2I	RGATCY	3 cut(s)	359, 1442, 1927
BstXI	CCANNNNNNTGG	2 cut(s)	2714, 2792
BstYI	RGATCY	3 cut(s)	359, 1442, 1927
Bsu15I	ATCGAT	1 cut(s)	3055
BsuI	GTATCC	2 cut(s)	51, 103
BsuRI	GGCC	6 cut(s)	32, 205, 280, 813, 1707, 2389
BsuTUI	ATCGAT	1 cut(s)	3055
BtgZI	GCGATG	1 cut(s)	891
BtsI	GCAGTG	1 cut(s)	1760
BtsIMutI	CAGTG	5 cut(s)	242, 1453, 1760, 2173, 2242
BveI	ACCTGC	2 cut(s)	1262, 2458
Cac8I	GCNNGC	4 cut(s)	1151, 1245, 1893, 2757
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	2 cut(s)	550, 3028
CfoI	GCGC	4 cut(s)	520, 993, 1908, 2040
Cfr13I	GGNCC	5 cut(s)	811, 1914, 2298, 2795, 2928
ClaI	ATCGAT	1 cut(s)	3055
CseI	GACGC	1 cut(s)	599
CsiI	ACCWGGT	1 cut(s)	2731
Csp6I	GTAC	5 cut(s)	8, 275, 533, 1696, 2782
CviQI	GTAC	5 cut(s)	8, 275, 533, 1696, 2782
DdeI	CTNAG	9 cut(s)	539, 929, 1567, 1642, 2013, 2229, 2234, 2412, 2751
DinI	GGCGCC	1 cut(s)	2039
DpnI	GATC	9 cut(s)	361, 984, 1195, 1323, 1444, 1794, 1929, 2222, 3033
DpnII	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
DraI	TTTAAA	1 cut(s)	1161
DraIII	CACNNNGTG	1 cut(s)	2735
EaeI	YGGCCR	2 cut(s)	30, 278
Eam1104I	CTCTTC	8 cut(s)	66, 842, 1506, 1575, 1626, 2079, 2998, 3004
EarI	CTCTTC	8 cut(s)	66, 842, 1506, 1575, 1626, 2079, 2998, 3004
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	281
Eco147I	AGGCCT	2 cut(s)	1707, 2389
Eco31I	GGTCTC	1 cut(s)	2473
Eco32I	GATATC	1 cut(s)	2633
Eco47I	GGWCC	4 cut(s)	1914, 2298, 2795, 2928
Eco47III	AGCGCT	1 cut(s)	1907
Eco57I	CTGAAG	5 cut(s)	411, 1599, 1677, 1817, 2079
Eco88I	CYCGRG	1 cut(s)	1484
Eco91I	GGTNACC	1 cut(s)	2984
EcoO109I	RGGNCCY	2 cut(s)	1914, 2298
EcoO65I	GGTNACC	1 cut(s)	2984
EcoRI	GAATTC	1 cut(s)	494
EcoRV	GATATC	1 cut(s)	2633
EcoT14I	CCWWGG	1 cut(s)	281
EcoT22I	ATGCAT	5 cut(s)	376, 1725, 2490, 2508, 2526
EgeI	GGCGCC	1 cut(s)	2039
EheI	GGCGCC	1 cut(s)	2039
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	2139
FaqI	GGGAC	3 cut(s)	2284, 2447, 2636
FauI	CCCGC	2 cut(s)	2292, 3032
FauNDI	CATATG	3 cut(s)	1016, 1050, 2342
FbaI	TGATCA	1 cut(s)	3031
FblI	GTMKAC	3 cut(s)	765, 1974, 2205
Fnu4HI	GCNGC	7 cut(s)	384, 387, 521, 1458, 1881, 2018, 2586
Fsp4HI	GCNGC	7 cut(s)	384, 387, 521, 1458, 1881, 2018, 2586
FspBI	CTAG	9 cut(s)	114, 348, 986, 1598, 2045, 2144, 2799, 2859, 3048
GlaI	GCGC	4 cut(s)	519, 992, 1907, 2039
GluI	GCNGC	7 cut(s)	384, 387, 521, 1458, 1881, 2018, 2586
GsaI	CCCAGC	1 cut(s)	1880
GsuI	CTGGAG	2 cut(s)	962, 1422
HaeII	RGCGCY	2 cut(s)	1909, 2041
HaeIII	GGCC	6 cut(s)	32, 205, 280, 813, 1707, 2389
HapII	CCGG	4 cut(s)	1331, 1675, 2397, 2654
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	4 cut(s)	520, 993, 1908, 2040
Hin1I	GRCGYC	1 cut(s)	2038
Hin6I	GCGC	4 cut(s)	518, 991, 1906, 2038
HinP1I	GCGC	4 cut(s)	518, 991, 1906, 2038
HincII	GTYRAC	2 cut(s)	1975, 2849
HindII	GTYRAC	2 cut(s)	1975, 2849
HpaII	CCGG	4 cut(s)	1331, 1675, 2397, 2654
HphI	GGTGA	6 cut(s)	182, 617, 1371, 1603, 2273, 2996
Hpy99I	CGWCG	2 cut(s)	16, 1431
HpyCH4III	ACNGT	7 cut(s)	12, 354, 1176, 1312, 1481, 2177, 2422
HpyCH4IV	ACGT	3 cut(s)	1429, 1621, 2132
HpyF10VI	GCNNNNNNNGC	6 cut(s)	323, 371, 380, 1277, 1784, 2756
HpyF3I	CTNAG	9 cut(s)	539, 929, 1567, 1642, 2013, 2229, 2234, 2412, 2751
HpySE526I	ACGT	3 cut(s)	1429, 1621, 2132
Hsp92I	GRCGYC	1 cut(s)	2038
HspAI	GCGC	4 cut(s)	518, 991, 1906, 2038
KasI	GGCGCC	1 cut(s)	2037
Kpn2I	TCCGGA	1 cut(s)	1674
KpnI	GGTACC	1 cut(s)	2785
Ksp22I	TGATCA	1 cut(s)	3031
Kzo9I	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
LguI	GCTCTTC	2 cut(s)	66, 1506
LmnI	GCTCC	9 cut(s)	322, 943, 1309, 1372, 1414, 1751, 2662, 2731, 2764
Lsp1109I	GCAGC	7 cut(s)	373, 395, 507, 1444, 1867, 2004, 2597
MabI	ACCWGGT	1 cut(s)	2731
MaeI	CTAG	9 cut(s)	114, 348, 986, 1598, 2045, 2144, 2799, 2859, 3048
MaeII	ACGT	3 cut(s)	1429, 1621, 2132
MaeIII	GTNAC	3 cut(s)	288, 1648, 2984
MalI	GATC	9 cut(s)	361, 984, 1195, 1323, 1444, 1794, 1929, 2222, 3033
MboI	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
MflI	RGATCY	3 cut(s)	359, 1442, 1927
MhlI	GDGCHC	1 cut(s)	2740
MluCI	AATT	8 cut(s)	494, 747, 826, 1112, 1156, 1829, 2066, 2697
Mly113I	GGCGCC	1 cut(s)	2038
MlyI	GAGTC	6 cut(s)	429, 446, 1496, 1680, 2254, 2839
MmeI	TCCRAC	5 cut(s)	236, 542, 1171, 1331, 2628
Mph1103I	ATGCAT	5 cut(s)	376, 1725, 2490, 2508, 2526
MroI	TCCGGA	1 cut(s)	1674
MseI	TTAA	9 cut(s)	546, 1136, 1160, 1538, 1821, 1845, 2186, 2211, 2217
MslI	CAYNNNNRTG	1 cut(s)	3027
MspA1I	CMGCKG	2 cut(s)	386, 1880
MspI	CCGG	4 cut(s)	1331, 1675, 2397, 2654
MvnI	CGCG	1 cut(s)	1500
MwoI	GCNNNNNNNGC	6 cut(s)	323, 371, 380, 1277, 1784, 2756
NarI	GGCGCC	1 cut(s)	2038
NciI	CCSGG	2 cut(s)	2397, 2654
NdeI	CATATG	3 cut(s)	1016, 1050, 2342
NdeII	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
NlaIV	GGNNCC	8 cut(s)	1368, 1444, 2039, 2300, 2658, 2727, 2783, 2929
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	2984
NsiI	ATGCAT	5 cut(s)	376, 1725, 2490, 2508, 2526
NspI	RCATGY	2 cut(s)	1895, 2855
NspV	TTCGAA	1 cut(s)	1827
PaeI	GCATGC	1 cut(s)	1895
PaeR7I	CTCGAG	1 cut(s)	1484
PagI	TCATGA	2 cut(s)	550, 3028
PaqCI	CACCTGC	1 cut(s)	2458
PceI	AGGCCT	2 cut(s)	1707, 2389
PciSI	GCTCTTC	2 cut(s)	66, 1506
PfeI	GAWTC	9 cut(s)	100, 334, 467, 860, 958, 1066, 2808, 2890, 3043
PfoI	TCCNGGA	2 cut(s)	772, 1438
PkrI	GCNGC	7 cut(s)	385, 388, 522, 1459, 1882, 2019, 2587
PleI	GAGTC	6 cut(s)	429, 446, 1495, 1679, 2254, 2838
PluTI	GGCGCC	1 cut(s)	2041
PpsI	GAGTC	6 cut(s)	429, 446, 1495, 1679, 2254, 2838
PpuMI	RGGWCCY	2 cut(s)	1914, 2298
Psp1406I	AACGTT	1 cut(s)	1621
Psp5II	RGGWCCY	2 cut(s)	1914, 2298
PspEI	GGTNACC	1 cut(s)	2984
PspFI	CCCAGC	1 cut(s)	1876
PspN4I	GGNNCC	8 cut(s)	1368, 1444, 2039, 2300, 2658, 2727, 2783, 2929
PspPI	GGNCC	5 cut(s)	811, 1914, 2298, 2795, 2928
PspPPI	RGGWCCY	2 cut(s)	1914, 2298
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	3 cut(s)	359, 1442, 1927
PvuII	CAGCTG	2 cut(s)	386, 1880
RsaI	GTAC	5 cut(s)	9, 276, 534, 1697, 2783
RsaNI	GTAC	5 cut(s)	8, 275, 533, 1696, 2782
RseI	CAYNNNNRTG	1 cut(s)	3027
SalI	GTCGAC	1 cut(s)	1973
SapI	GCTCTTC	2 cut(s)	66, 1506
SaqAI	TTAA	9 cut(s)	546, 1136, 1160, 1538, 1821, 1845, 2186, 2211, 2217
SatI	GCNGC	7 cut(s)	384, 387, 521, 1458, 1881, 2018, 2586
Sau3AI	GATC	9 cut(s)	359, 982, 1193, 1321, 1442, 1792, 1927, 2220, 3031
Sau96I	GGNCC	5 cut(s)	811, 1914, 2298, 2795, 2928
SchI	GAGTC	6 cut(s)	429, 446, 1496, 1680, 2254, 2839
SduI	GDGCHC	1 cut(s)	2740
SexAI	ACCWGGT	1 cut(s)	2731
SfcI	CTRYAG	1 cut(s)	1909
SfoI	GGCGCC	1 cut(s)	2039
Sfr274I	CTCGAG	1 cut(s)	1484
SfuI	TTCGAA	1 cut(s)	1827
SinI	GGWCC	4 cut(s)	1914, 2298, 2795, 2928
SlaI	CTCGAG	1 cut(s)	1484
SmiMI	CAYNNNNRTG	1 cut(s)	3027
SmlI	CTYRAG	4 cut(s)	456, 947, 1484, 1529
SmoI	CTYRAG	4 cut(s)	456, 947, 1484, 1529
SpeI	ACTAGT	1 cut(s)	113
SphI	GCATGC	1 cut(s)	1895
Sse9I	AATT	8 cut(s)	494, 747, 826, 1112, 1156, 1829, 2066, 2697
SseBI	AGGCCT	2 cut(s)	1707, 2389
SsiI	CCGC	6 cut(s)	56, 1247, 2285, 2681, 2995, 3039
SspDI	GGCGCC	1 cut(s)	2037
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	9 cut(s)	114, 348, 986, 1598, 2045, 2144, 2799, 2859, 3048
StuI	AGGCCT	2 cut(s)	1707, 2389
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	7 cut(s)	12, 354, 1176, 1312, 1481, 2177, 2422
TaiI	ACGT	3 cut(s)	1432, 1624, 2135
TaqII	GACCGA	3 cut(s)	1107, 2497, 2643
TasI	AATT	8 cut(s)	494, 747, 826, 1112, 1156, 1829, 2066, 2697
TatI	WGTACW	2 cut(s)	532, 1695
TfiI	GAWTC	9 cut(s)	100, 334, 467, 860, 958, 1066, 2808, 2890, 3043
Tru1I	TTAA	9 cut(s)	546, 1136, 1160, 1538, 1821, 1845, 2186, 2211, 2217
Tru9I	TTAA	9 cut(s)	546, 1136, 1160, 1538, 1821, 1845, 2186, 2211, 2217
TscAI	CASTG	5 cut(s)	242, 1453, 1760, 2180, 2242
TseFI	GTSAC	1 cut(s)	2984
TseI	GCWGC	7 cut(s)	383, 386, 520, 1457, 1880, 2017, 2585
Tsp45I	GTSAC	1 cut(s)	2984
TspGWI	ACGGA	4 cut(s)	506, 1532, 2093, 2253
TspRI	CASTG	5 cut(s)	242, 1453, 1760, 2180, 2242
VneI	GTGCAC	1 cut(s)	2736
VpaK11BI	GGWCC	4 cut(s)	1914, 2298, 2795, 2928
XapI	RAATTY	4 cut(s)	494, 1112, 1156, 2066
XbaI	TCTAGA	3 cut(s)	347, 985, 2858
XceI	RCATGY	2 cut(s)	1895, 2855
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2454, 2774
XhoI	CTCGAG	1 cut(s)	1484
XmiI	GTMKAC	3 cut(s)	765, 1974, 2205
XspI	CTAG	9 cut(s)	114, 348, 986, 1598, 2045, 2144, 2799, 2859, 3048
Zsp2I	ATGCAT	5 cut(s)	376, 1725, 2490, 2508, 2526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.