Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

12939273 .. 12941660

Gene Structure 2388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGGGAGTTCCGGCTTTCTATAGATGGTTAGCGGAGAAGTATCAGCTTGTTGTTGTAGATGTGGTGGAGGAGGAACCCATTGTGATTGATGATGTTTCGATTCCGGTTGATACCTCCAAACCCAATCCTAATGGTCTCGAGTTTGATAATTTATACCTAGACATGAATGCCATTATCCACCCTTGTTTTCACCCTGAGGATAGGCCGAGTCCGACCACATTTGATGAGGTGTTTCAGTGCATGTTTGAGTATATTGATAGGCTTTTTGGGATGGTGAGGCCGAGGAAGGTGTTATACATGGCCATTGATGGAGTTGCCCCCAGGGCAAAGATGAACCAGCAGAGGTCACGGCGGTTTAGAGCTGCGAAAGACGTAGCTGATGCTGCGGTGGAGGAGGAGAGGCTTCGTGAGGAGTTTGAAGCAGAAGGGAGGAAGCTCCCGCCTAAATTAGAGTCACAGACTTTTGATTCCAATGTCATTACGCCTAGGACTCCTTTTATGGCTATTTTGTCGGTTGCATTGCAGTACTATATTCATCTTAGGTTGAACAATGATCCTGGGTGGAGAAATGTTAAGGTTATTCTTTTTGATGCAAATTCTCCGGGTGAAGGGGAACATAAGATTATGTCATATATTCGTCTTCAAAGAAACCTTCCTGGTTATGATCCTAATACGCGTCATTGTTTGTATGGTTTGGATGCCGATTTGATTATGCTGGCTTTGGCTACACATGAAGTTCATTTTTCAATTCTTCGGGAGGTGGTTTACACTGCACAGCAAGACAAATGCTTACTTTATGGTCAGATGGGGCATTTAGCCGCAGATTGCCAAGGAAAGGCAAAGCGTAAGGATGTGGATATGCTTGATGTTGATCAGAAAGGTACTGGTGCTGAGGTTGTGGCCAAGAAGCCGTACCAGTTTCTCAACATTTGGACTCTTAGAGAATATTTAGACTGTGAGATGCGGAATATTCCAAATTCCCCATTCGAGATTGATCTTGAGCGCATTATCGATGACTTCATATTTATTTGTTTTTTCGTTGGAAACGACTTCCTGCCGCATATGCCTACTCTGGAGATTCGTGAGGGTGCAATCAACTTGCTTATGGCTGTATACAAAAAGGAATTTCATGCACTGGGTGGATATTTGACTGATTCAAGTAAGCTGAATTTGAGTCGGGTGGAGCATTTCATTCAGGCAGTTGGTTGTTTTGAAGATAAAATATTCCAGAAACGAGCTCAGTTGCATCTGCGGCAGGCACAAAGAATCAAACGTGCCAAGGAGCAAGTTCCCCAAGTGCAGCCAGATTCTTTAGTTGCAGTTAATCGATTTCAAGGTTCTCGTCTTGCTTCAGGTCCTTCTTCTGCGCCATATCAACAGTATACTAGATTATCTGGTAGGGGAAATCTTGAAAAAGTTGCACGCTTGTCTTCAGAGGCATCAAGTATCGGTGCTGCTATTGTTGAAGCTGAGAACAGCAGTACTCCTGATGTCGAAGAACACAAAAATAAAGAAGATTTGAAAGCAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAGCCCCCAAGAGGAAGACAAGGTCAAGTTGGGAGCACCTGGTTGGAAGGATAGGTACTATGAAGAAAAGTTTTCCGCCAAAACTCAAGAAGAACGTGAAGCAGTTTGGAAAGATGTTATCTTGAGATACACAGAAGGTTTGTGTTGGGTGATGAATTATTACTATGAAGGGGTTTGTTCATGGGAGTGGTTTTATCCTTATCATTATGCACCCTTTGCTTCTGATCTTAAGGACATAGGTCAGCTAAATATAAGCTTCCACTTGGGCACTCCCTTTAAACCCTTCAGTCAACTGTTGGGGGTTTTCCCAGCTGCAAGCGCTCATGCCCTTCCTGAGAACTACAAAAAGTTAATGATTGATCCAAACTCGCCTATTATTGACTTCTACCCTACTGACTTTGAAGTGGATATGAATGGGAAACGGTATGCATGGCAGGGTATTGCAAAGTTGCCATTCATTGACCAAGATCGTCTTCTTTCTGAGGTTGCAAAAATTGAACACACATTGACAGAGGAGGAAACCCGGAGAAACTCCATGATGTTTGAGATGCTCTTTGTTTCATCTTCTCATCCTCTCTCTGTATGCATATACTTTCTTGATGATTGTAGTAGACAGTTGACAGACAAAGACCGAGTTGAGGCTAAGCAACAAATTGATCCTAAATACAGTGAAGGGATGAATGGTTATCTATCTTCATGTGCTGGACAGTCATGTCCACCTATTTTTCGGTCTCCTGTTAAATACATGGAGGATATTATGGACAACCAAGTCATCTGCGACTGTGACAGTGGGGGATCTGAAGCCTGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

796

Amino Acids

91.13

Weight (kDa)

5.39

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 253	3.8e-97	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	331 - 784	4.8e-157	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2286, 2342
AccI	GTMKAC	3 cut(s)	1113, 1382, 2185
AccII	CGCG	1 cut(s)	676
AciI	CCGC	9 cut(s)	32, 352, 386, 440, 819, 964, 1058, 1252, 1650
AclWI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2377
AcoI	YGGCCR	2 cut(s)	300, 900
AcsI	RAATTY	4 cut(s)	595, 976, 1124, 1168
AcuI	CTGAAG	3 cut(s)	1335, 1416, 1843
AdeI	CACNNNGTG	1 cut(s)	1139
AfaI	GTAC	5 cut(s)	527, 883, 914, 1483, 1631
AfeI	AGCGCT	1 cut(s)	1894
AfiI	CCNNNNNNNGG	4 cut(s)	608, 835, 1585, 2212
AflII	CTTAAG	1 cut(s)	1802
AflIII	ACRYGT	1 cut(s)	674
AjnI	CCWGG	4 cut(s)	320, 556, 655, 1612
AjuI	GAANNNNNNNTTGG	2 cut(s)	2031, 2063
Alw21I	GWGCWC	2 cut(s)	1240, 1612
Alw26I	GTCTC	2 cut(s)	140, 2310
AlwI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2377
Ama87I	CYCGRG	1 cut(s)	137
Aor51HI	AGCGCT	1 cut(s)	1894
AoxI	GGCC	4 cut(s)	203, 278, 300, 900
ApeKI	GCWGC	5 cut(s)	362, 383, 1300, 1454, 1886
ApoI	RAATTY	4 cut(s)	595, 976, 1124, 1168
AspA2I	CCTAGG	1 cut(s)	485
AspLEI	GCGC	3 cut(s)	1005, 1369, 1895
AspS9I	GGNCC	1 cut(s)	1355
AsuC2I	CCSGG	2 cut(s)	603, 2098
AsuHPI	GGTGA	4 cut(s)	182, 286, 617, 1735
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	1355
AvrII	CCTAGG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	1844
BalI	TGGCCA	2 cut(s)	302, 902
BanII	GRGCYC	1 cut(s)	1240
BarI	GAAGNNNNNNTAC	4 cut(s)	278, 310, 1613, 1645
BbsI	GAAGAC	4 cut(s)	632, 1422, 1596, 2039
Bbv12I	GWGCWC	2 cut(s)	1240, 1612
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	5 cut(s)	349, 370, 1312, 1441, 1873
BccI	CCATC	4 cut(s)	18, 265, 302, 799
BceAI	ACGGC	2 cut(s)	365, 895
BciT130I	CCWGG	4 cut(s)	322, 558, 657, 1614
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	2 cut(s)	603, 2098
BcoDI	GTCTC	2 cut(s)	140, 2310
BfaI	CTAG	3 cut(s)	158, 486, 1386
BfmI	CTRYAG	1 cut(s)	19
BfoI	RGCGCY	1 cut(s)	1896
BfrI	CTTAAG	1 cut(s)	1802
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	8 cut(s)	363, 384, 819, 1058, 1253, 1301, 1455, 1887
BlnI	CCTAGG	1 cut(s)	485
BlpI	GCTNAGC	1 cut(s)	2217
BlsI	GCNGC	8 cut(s)	364, 385, 820, 1059, 1254, 1302, 1456, 1888
BmcAI	AGTACT	2 cut(s)	527, 1483
Bme1390I	CCNGG	6 cut(s)	322, 558, 603, 657, 1614, 2098
Bme18I	GGWCC	1 cut(s)	1355
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	1355
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	6 cut(s)	322, 558, 603, 657, 1614, 2098
BmrI	ACTGGG	1 cut(s)	1145
BmsI	GCATC	8 cut(s)	370, 580, 688, 951, 1255, 1448, 1549, 2112
BmuI	ACTGGG	1 cut(s)	1145
BoxI	GACNNNNGTC	1 cut(s)	1812
BpiI	GAAGAC	4 cut(s)	632, 1422, 1596, 2039
BpmI	CTGGAG	1 cut(s)	1094
Bpu10I	CCTNAGC	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	2217
BpuEI	CTTGAG	4 cut(s)	1019, 1517, 1644, 1717
BpuMI	CCSGG	2 cut(s)	603, 2098
Bsa29I	ATCGAT	2 cut(s)	1011, 1327
BsaBI	GATNNNNATC	1 cut(s)	870
BsaI	GGTCTC	2 cut(s)	140, 2310
BsaJI	CCNNGG	7 cut(s)	281, 320, 321, 485, 557, 829, 1278
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	4 cut(s)	608, 835, 1585, 2212
Bse1I	ACTGG	3 cut(s)	889, 916, 1140
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	518
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	4 cut(s)	322, 558, 657, 1614
BseCI	ATCGAT	2 cut(s)	1011, 1327
BseDI	CCNNGG	7 cut(s)	281, 320, 321, 485, 557, 829, 1278
BseGI	GGATG	5 cut(s)	276, 703, 856, 2143, 2256
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	4 cut(s)	608, 835, 1585, 2212
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	6 cut(s)	186, 882, 1253, 1461, 1899, 2046
BseNI	ACTGG	3 cut(s)	889, 916, 1140
BseRI	GAGGAG	5 cut(s)	83, 407, 410, 425, 2102
BseSI	GKGCMC	1 cut(s)	1844
BseXI	GCAGC	5 cut(s)	349, 370, 1312, 1441, 1873
BseYI	CCCAGC	1 cut(s)	1882
BsgI	GTGCAG	3 cut(s)	756, 1319, 2365
Bsh1236I	CGCG	1 cut(s)	676
BshFI	GGCC	4 cut(s)	205, 280, 302, 902
BshVI	ATCGAT	2 cut(s)	1011, 1327
BsiHKAI	GWGCWC	2 cut(s)	1240, 1612
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	11, 104, 602, 2098
BslI	CCNNNNNNNGG	4 cut(s)	608, 835, 1585, 2212
BsmAI	GTCTC	2 cut(s)	140, 2310
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	4 cut(s)	205, 280, 302, 902
Bso31I	GGTCTC	2 cut(s)	140, 2310
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	1240, 1612, 1844
Bsp143I	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
Bsp1720I	GCTNAGC	1 cut(s)	2217
BspACI	CCGC	9 cut(s)	32, 352, 386, 440, 819, 964, 1058, 1252, 1650
BspANI	GGCC	4 cut(s)	205, 280, 302, 902
BspCNI	CTCAG	6 cut(s)	187, 883, 1252, 1462, 1900, 2047
BspDI	ATCGAT	2 cut(s)	1011, 1327
BspFNI	CGCG	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2377
BspTI	CTTAAG	1 cut(s)	1802
BspTNI	GGTCTC	2 cut(s)	140, 2310
BsrDI	GCAATG	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	889, 916, 1140
BssECI	CCNNGG	7 cut(s)	281, 320, 321, 485, 557, 829, 1278
BssMI	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
BssNAI	GTATAC	2 cut(s)	1114, 1383
BssT1I	CCWWGG	3 cut(s)	485, 829, 1278
Bst1107I	GTATAC	2 cut(s)	1114, 1383
Bst2UI	CCWGG	4 cut(s)	322, 558, 657, 1614
Bst4CI	ACNGT	9 cut(s)	956, 1380, 1869, 1998, 2190, 2243, 2283, 2357, 2363
BstAFI	CTTAAG	1 cut(s)	1802
BstAPI	GCANNNNNTGC	1 cut(s)	1790
BstC8I	GCNNGC	5 cut(s)	717, 1257, 1423, 1891, 2380
BstDEI	CTNAG	9 cut(s)	195, 539, 891, 938, 1239, 1470, 1908, 2055, 2217
BstF5I	GGATG	5 cut(s)	276, 703, 856, 2143, 2256
BstFNI	CGCG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	1896
BstHHI	GCGC	3 cut(s)	1005, 1369, 1895
BstKTI	GATC	9 cut(s)	556, 667, 874, 997, 1801, 1936, 2044, 2233, 2372
BstMAI	GTCTC	2 cut(s)	140, 2310
BstMBI	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
BstMWI	GCNNNNNNNGC	6 cut(s)	323, 383, 1063, 1252, 1790, 1892
BstNI	CCWGG	4 cut(s)	322, 558, 657, 1614
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	1 cut(s)	1812
BstSCI	CCNGG	6 cut(s)	320, 556, 601, 655, 1612, 2096
BstSFI	CTRYAG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	1844
BstUI	CGCG	1 cut(s)	676
BstV1I	GCAGC	5 cut(s)	349, 370, 1312, 1441, 1873
BstV2I	GAAGAC	4 cut(s)	632, 1422, 1596, 2039
BstX2I	RGATCY	1 cut(s)	2369
BstYI	RGATCY	1 cut(s)	2369
BstZ17I	GTATAC	2 cut(s)	1114, 1383
Bsu15I	ATCGAT	2 cut(s)	1011, 1327
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	205, 280, 302, 902
BsuTUI	ATCGAT	2 cut(s)	1011, 1327
BtsCI	GGATG	5 cut(s)	276, 703, 856, 2143, 2256
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	5 cut(s)	242, 768, 1133, 2248, 2368
Cac8I	GCNNGC	5 cut(s)	717, 1257, 1423, 1891, 2380
CfoI	GCGC	3 cut(s)	1005, 1369, 1895
Cfr13I	GGNCC	1 cut(s)	1355
ClaI	ATCGAT	2 cut(s)	1011, 1327
CseI	GACGC	1 cut(s)	665
CsiI	ACCWGGT	1 cut(s)	1612
Csp6I	GTAC	5 cut(s)	526, 882, 913, 1482, 1630
CviQI	GTAC	5 cut(s)	526, 882, 913, 1482, 1630
DdeI	CTNAG	9 cut(s)	195, 539, 891, 938, 1239, 1470, 1908, 2055, 2217
DpnI	GATC	9 cut(s)	555, 666, 873, 996, 1800, 1935, 2043, 2232, 2371
DpnII	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
DraI	TTTAAA	1 cut(s)	1852
DraIII	CACNNNGTG	1 cut(s)	1139
DrdI	GACNNNNNNGTC	2 cut(s)	2286, 2342
DseDI	GACNNNNNNGTC	2 cut(s)	2286, 2342
EaeI	YGGCCR	2 cut(s)	300, 900
EciI	GGCGGA	1 cut(s)	1639
Ecl136II	GAGCTC	1 cut(s)	1238
Eco130I	CCWWGG	3 cut(s)	485, 829, 1278
Eco24I	GRGCYC	1 cut(s)	1240
Eco31I	GGTCTC	2 cut(s)	140, 2310
Eco47I	GGWCC	1 cut(s)	1355
Eco47III	AGCGCT	1 cut(s)	1894
Eco53kI	GAGCTC	1 cut(s)	1238
Eco57I	CTGAAG	3 cut(s)	1335, 1416, 1843
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	1238
EcoO109I	RGGNCCY	1 cut(s)	1355
EcoRII	CCWGG	4 cut(s)	320, 556, 655, 1612
EcoT14I	CCWWGG	3 cut(s)	485, 829, 1278
EcoT22I	ATGCAT	2 cut(s)	2005, 2162
EcoT38I	GRGCYC	1 cut(s)	1240
ErhI	CCWWGG	3 cut(s)	485, 829, 1278
FalI	AAGNNNNNCTT	2 cut(s)	2031, 2063
FauI	CCCGC	1 cut(s)	447
FauNDI	CATATG	1 cut(s)	1062
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	3 cut(s)	1113, 1382, 2185
Fnu4HI	GCNGC	8 cut(s)	363, 384, 819, 1058, 1253, 1301, 1455, 1887
FokI	GGATG	5 cut(s)	283, 710, 863, 2130, 2263
FriOI	GRGCYC	1 cut(s)	1240
Fsp4HI	GCNGC	8 cut(s)	363, 384, 819, 1058, 1253, 1301, 1455, 1887
FspBI	CTAG	3 cut(s)	158, 486, 1386
GlaI	GCGC	3 cut(s)	1004, 1368, 1894
GluI	GCNGC	8 cut(s)	363, 384, 819, 1058, 1253, 1301, 1455, 1887
GsaI	CCCAGC	1 cut(s)	1886
GsuI	CTGGAG	1 cut(s)	1094
HaeII	RGCGCY	1 cut(s)	1896
HaeIII	GGCC	4 cut(s)	205, 280, 302, 902
HapII	CCGG	4 cut(s)	11, 104, 602, 2098
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	3 cut(s)	1005, 1369, 1895
Hin6I	GCGC	3 cut(s)	1003, 1367, 1893
HinP1I	GCGC	3 cut(s)	1003, 1367, 1893
HincII	GTYRAC	2 cut(s)	1865, 2193
HindII	GTYRAC	2 cut(s)	1865, 2193
HindIII	AAGCTT	1 cut(s)	1828
HpaII	CCGG	4 cut(s)	11, 104, 602, 2098
HphI	GGTGA	4 cut(s)	182, 286, 617, 1735
Hpy166II	GTNNAC	7 cut(s)	766, 1114, 1383, 1865, 2186, 2193, 2291
Hpy188I	TCNGA	8 cut(s)	213, 804, 876, 1435, 1558, 1798, 2056, 2374
Hpy8I	GTNNAC	7 cut(s)	766, 1114, 1383, 1865, 2186, 2193, 2291
HpyCH4III	ACNGT	9 cut(s)	956, 1380, 1869, 1998, 2190, 2243, 2283, 2357, 2363
HpyCH4IV	ACGT	3 cut(s)	372, 1273, 1669
HpyF10VI	GCNNNNNNNGC	6 cut(s)	323, 383, 1063, 1252, 1790, 1892
HpyF3I	CTNAG	9 cut(s)	195, 539, 891, 938, 1239, 1470, 1908, 2055, 2217
HpySE526I	ACGT	3 cut(s)	372, 1273, 1669
HspAI	GCGC	3 cut(s)	1003, 1367, 1893
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
LmnI	GCTCC	4 cut(s)	441, 1183, 1282, 1607
Lsp1109I	GCAGC	5 cut(s)	349, 370, 1312, 1441, 1873
LweI	GCATC	8 cut(s)	370, 580, 688, 951, 1255, 1448, 1549, 2112
MabI	ACCWGGT	1 cut(s)	1612
MaeI	CTAG	3 cut(s)	158, 486, 1386
MaeII	ACGT	3 cut(s)	372, 1273, 1669
MaeIII	GTNAC	3 cut(s)	345, 453, 2357
MalI	GATC	9 cut(s)	555, 666, 873, 996, 1800, 1935, 2043, 2232, 2371
MboI	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
MflI	RGATCY	1 cut(s)	2369
MhlI	GDGCHC	3 cut(s)	1240, 1612, 1844
MlsI	TGGCCA	2 cut(s)	302, 902
MluI	ACGCGT	1 cut(s)	674
MluNI	TGGCCA	2 cut(s)	302, 902
MlyI	GAGTC	5 cut(s)	217, 461, 484, 928, 1183
MmeI	TCCRAC	3 cut(s)	236, 1021, 1598
Mox20I	TGGCCA	2 cut(s)	302, 902
Mph1103I	ATGCAT	2 cut(s)	2005, 2162
MscI	TGGCCA	2 cut(s)	302, 902
MseI	TTAA	7 cut(s)	573, 1323, 1566, 1803, 1851, 1925, 2313
MslI	CAYNNNNRTG	1 cut(s)	1759
Msp20I	TGGCCA	2 cut(s)	302, 902
MspA1I	CMGCKG	1 cut(s)	1886
MspCI	CTTAAG	1 cut(s)	1802
MspI	CCGG	4 cut(s)	11, 104, 602, 2098
MspR9I	CCNGG	6 cut(s)	322, 558, 603, 657, 1614, 2098
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	4 cut(s)	322, 558, 657, 1614
MvnI	CGCG	1 cut(s)	676
MwoI	GCNNNNNNNGC	6 cut(s)	323, 383, 1063, 1252, 1790, 1892
NciI	CCSGG	2 cut(s)	603, 2098
NdeI	CATATG	1 cut(s)	1062
NdeII	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	2 cut(s)	231, 306
NmuCI	GTSAC	3 cut(s)	345, 453, 2357
NsiI	ATGCAT	2 cut(s)	2005, 2162
NspI	RCATGY	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	137
PasI	CCCWGGG	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	1044
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	6 cut(s)	100, 467, 1078, 1154, 1266, 1307
PflFI	GACNNNGTC	1 cut(s)	1595
PkrI	GCNGC	8 cut(s)	364, 385, 820, 1059, 1254, 1302, 1456, 1888
PleI	GAGTC	5 cut(s)	216, 460, 484, 928, 1182
PpsI	GAGTC	5 cut(s)	216, 460, 484, 928, 1182
PpuMI	RGGWCCY	1 cut(s)	1355
PshAI	GACNNNNGTC	1 cut(s)	1812
Psp124BI	GAGCTC	1 cut(s)	1240
Psp5II	RGGWCCY	1 cut(s)	1355
Psp6I	CCWGG	4 cut(s)	320, 556, 655, 1612
PspFI	CCCAGC	1 cut(s)	1882
PspGI	CCWGG	4 cut(s)	320, 556, 655, 1612
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	1355
PspPPI	RGGWCCY	1 cut(s)	1355
PsuI	RGATCY	1 cut(s)	2369
PsyI	GACNNNGTC	1 cut(s)	1595
PvuII	CAGCTG	1 cut(s)	1886
RsaI	GTAC	5 cut(s)	527, 883, 914, 1483, 1631
RsaNI	GTAC	5 cut(s)	526, 882, 913, 1482, 1630
RseI	CAYNNNNRTG	1 cut(s)	1759
SacI	GAGCTC	1 cut(s)	1240
SaqAI	TTAA	7 cut(s)	573, 1323, 1566, 1803, 1851, 1925, 2313
SatI	GCNGC	8 cut(s)	363, 384, 819, 1058, 1253, 1301, 1455, 1887
Sau3AI	GATC	9 cut(s)	553, 664, 871, 994, 1798, 1933, 2041, 2230, 2369
Sau96I	GGNCC	1 cut(s)	1355
ScaI	AGTACT	2 cut(s)	527, 1483
SchI	GAGTC	5 cut(s)	217, 461, 484, 928, 1183
ScrFI	CCNGG	6 cut(s)	322, 558, 603, 657, 1614, 2098
SduI	GDGCHC	3 cut(s)	1240, 1612, 1844
SexAI	ACCWGGT	1 cut(s)	1612
SfaNI	GCATC	8 cut(s)	370, 580, 688, 951, 1255, 1448, 1549, 2112
SfcI	CTRYAG	1 cut(s)	19
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	1355
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	1759
SmlI	CTYRAG	6 cut(s)	137, 998, 1532, 1659, 1696, 1802
SmoI	CTYRAG	6 cut(s)	137, 998, 1532, 1659, 1696, 1802
SsiI	CCGC	9 cut(s)	32, 352, 386, 440, 819, 964, 1058, 1252, 1650
SspI	AATATT	3 cut(s)	947, 970, 1224
SspMI	CTAG	3 cut(s)	158, 486, 1386
SstI	GAGCTC	1 cut(s)	1240
StyD4I	CCNGG	6 cut(s)	320, 556, 601, 655, 1612, 2096
StyI	CCWWGG	3 cut(s)	485, 829, 1278
TaaI	ACNGT	9 cut(s)	956, 1380, 1869, 1998, 2190, 2243, 2283, 2357, 2363
TaiI	ACGT	3 cut(s)	375, 1276, 1672
TaqI	TCGA	6 cut(s)	98, 138, 987, 1011, 1327, 1494
TaqII	GACCGA	2 cut(s)	2220, 2292
TatI	WGTACW	2 cut(s)	525, 1481
TauI	GCSGC	3 cut(s)	821, 1060, 1255
TfiI	GAWTC	6 cut(s)	100, 467, 1078, 1154, 1266, 1307
Tru1I	TTAA	7 cut(s)	573, 1323, 1566, 1803, 1851, 1925, 2313
Tru9I	TTAA	7 cut(s)	573, 1323, 1566, 1803, 1851, 1925, 2313
TscAI	CASTG	5 cut(s)	242, 775, 1140, 2248, 2368
TseFI	GTSAC	3 cut(s)	345, 453, 2357
TseI	GCWGC	5 cut(s)	362, 383, 1300, 1454, 1886
Tsp45I	GTSAC	3 cut(s)	345, 453, 2357
TspRI	CASTG	5 cut(s)	242, 775, 1140, 2248, 2368
Tth111I	GACNNNGTC	1 cut(s)	1595
Vha464I	CTTAAG	1 cut(s)	1802
VpaK11BI	GGWCC	1 cut(s)	1355
XapI	RAATTY	4 cut(s)	595, 976, 1124, 1168
XceI	RCATGY	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	137
XmaJI	CCTAGG	1 cut(s)	485
XmiI	GTMKAC	3 cut(s)	1113, 1382, 2185
XspI	CTAG	3 cut(s)	158, 486, 1386
ZrmI	AGTACT	2 cut(s)	527, 1483
Zsp2I	ATGCAT	2 cut(s)	2005, 2162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.