Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Reverse (-)

7217905 .. 7225905

Gene Structure 8001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGGGAGTTCCAGCTTTCTACAGATGGCTAGCGGAGAAGTATCCACTCGTCGTCGTCGATGTGGTGGAAGAAGAACCGGTTGTAATCGACGACGTTTCGATTCCGGTCGACACCAGTAAGCCAAACCCTAACGGCGAGTATGACAATCTGTACCTCGACATGAATGGGATTATTCACCCCTGTTTTCATCCTGAGGATAGGCCTTCACCAACTACCTTTGACGAGGTATTTCAGTGCATGTTTGACTACATAGATAGGCTTTTTGTGATGGTGCGGCCTCGGAAGCTACTGTACATGGCAATTGATGGTGTTGCCCCTAGGGCGAAAATGAATCAACAGAGATCCCGGAGGTTTAGAGCTGCTAAAGATGCAGCAGATGCGGCAGCTGAAGAAGAAAGGCTGCGTGAGGAGTTTGAAATGGAGGGAAGAAAGCTTCCACCTAAACTGCATTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCATTTATGGCTGTTTTGTCAATTGCATTGCAGTACTATATTCATCTTAGATTAAATAACGATCCTGGATGGAAAAATGTTAAGGTGATTCTTTCCGATGCAAATGTTCCGGGTGAAGGGGAGCACAAGGTTATGTCATACATTCGTCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACACGTCATTGCCTGTATGGTTTGGATGCCGATTTAATTATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCTATTCTTCGAGAGGTTGTTTTCATTGCGGGACAGCAGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCTGCAAGTTGTGAAGGAAAGGCAAAACGGAAGGCTGGAGAGCTTGATGAGAAAGGTGATGCTGAGGCTGTGGCCAAGAAGCCGTACCAGTTTCTCAATATTTGGACCCTTCGAGAATATTTGGAATATGAGATGCGGATTCCAGGTGCCCCATTTGAGATTGATATTGAGCGCATTGTGGATGACTTTATATTCCTTTGTTTCTTTGTCGGAAATGATTTCTTACCTCATATGCCTACACTGGAGATTCGGGAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGGAATGGGGGGATATCTGACTAATGCAAGCAAGCCAAATTTGAGGCGGGTGGAGCATTTCATTCAGGCAGTTGGAAGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAACTGCATCTGAAGCAGGCAGAAAGAATAAAGCGTCAAAAGGCACAAGCTCGAAGAGGAGATGACGCAGAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTTAATCGGTTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCAACAATCTGGATCTGGGAGAGGAAATCCTCAAAAGGTTGCACGCTTGTCTTCAGAGGCATCAACTGTCGGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTCATGAAAACAAAGAAGATTTGAAAATAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAATCCTGAAGAAGACAAGGTTAAATTGGGTGAACCTGGATGGAGAGATAGGTATTATGAAGAGAAGTTCAATGCAAAAACTCCCGAAGAACGTGAAGAAATTCGAAGAGATGTTGTTTTGCGTTACACTGAAGGTCTGTGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCATGGCAGTGGTTTTACCCTTATCATTATGCACCCTTTGCTTCTGATCTCAAGGACCTCGGTCAACTAGATATAAGTTTTGAATTGGGCAGTCCCTTTAAACCGTTCAATCAGCTATTAGGGGTTTTCCCTGCTGCAAGTGCCCATGCCCTTCCTGAGGCATACAGGAAGTTGATGACTGATCCAAACTCACCTCTTATTGATTTTTACCCTACTGACTTTGAAGTGGATATGAATGGGAAACGATTTGCATGGCAGGCGGAGGAAGCACGTAGAAACAGTGTGATGTTTGAGATGCTCTTTGTTACATCTTCTCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGCTGTAAGCAATTGACAGACAAAGAGCGTGTTGAGGTTAAGGAACAAATTGATCCCAAATACAGGGATACATGCAGTGAAGGGATGAACGGCTATCTATCTCCATGTGCTGGAGAGCCTTGTCCTCCCGTTTTCCGGTCTCCTGTTGAAAGCATGGAGGATATAATGGACAACCAAGTCATATGCGCAATATACAGACTACCAGATGTACATGAGCATATAACTCGACCACCAGCAGGGGTCATTTTCCCTAAGAAGATTGTGTCATCGGGGGATATGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGGAAGCCATGGCATGACAATTCGGGGAGGAGGCCATATGAAAGTTCTAGGCAGCACCCTCCTGGAGCCATTTCTGGAAGACAGCTTGGCGATGCCGCTCATCGACTTGTTGTTAATAGTTTACATGTTAAGGCAAACAGCAATGGGTATGGCAATCAGATGCCTGCCCATCAACCATATGCCGAACCTCCATATTACCCACCACGGGCTTCCTACGCAAGTAATGGAAGCTATGATCAGGGACACCACAGTATGGCACCACCTAGAACTTTCCAGCATCCTCAAGTGCAACACCAAAATTCCTACCACCCTCCGAATAGACCTCATTCTCAACATTATGAAAGAAATTCTGGTCACTCATACTATCAGTCGGGCCGTCATCAGAATGGTGGAATTGCTTACCCCCAGAGACCAATTACACCAGCTCCACCAGGGGTCAATCCAGGTCCTTATCCAGTTGGTTATAACAACTATCAGAGTTACCAACAAGCTGGGCCGCCTGGTTATCAAGGCATTGATGCCTGGGTTCCACCGGCCCAGAATATGGGCAGAGGATATGGTCGTCCTCAGCAATCTGGAAACCCATACTCTGGGTTGGACAGAAGAGGAAATAGGAGACCACCTCCATCCCAGCATGGCCGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

1017

Amino Acids

115.63

Weight (kDa)

6.62

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 252	7.3e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	326 - 667	6.2e-127	Xrn1 helical domain
XRN_M	PF17846	667 - 790	1.7e-15	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2871
AasI	GACNNNNNNGTC	1 cut(s)	2267
Acc16I	TGCGCA	1 cut(s)	2278
AccB1I	GGYRCC	2 cut(s)	962, 2662
AccB7I	CCANNNNNTGG	4 cut(s)	2201, 2659, 2950, 2996
AccBSI	CCGCTC	1 cut(s)	2504
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	6 cut(s)	336, 545, 656, 1399, 1916, 2138
AcoI	YGGCCR	3 cut(s)	720, 888, 3043
AcsI	RAATTY	5 cut(s)	1109, 1153, 1665, 2704, 2752
AcuI	CTGAAG	6 cut(s)	408, 1256, 1341, 1416, 1593, 1716
AfaI	GTAC	5 cut(s)	152, 293, 524, 902, 2301
AflIII	ACRYGT	2 cut(s)	671, 2530
AgeI	ACCGGT	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	674
Alw21I	GWGCWC	2 cut(s)	615, 1225
Alw26I	GTCTC	3 cut(s)	2235, 2809, 3016
AlwI	GGATC	6 cut(s)	336, 545, 656, 1399, 1916, 2138
AoxI	GGCC	9 cut(s)	200, 275, 720, 888, 2438, 2779, 2900, 2940, 3043
ApeKI	GCWGC	8 cut(s)	359, 371, 383, 400, 818, 1454, 1874, 2458
ApoI	RAATTY	5 cut(s)	1109, 1153, 1665, 2704, 2752
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	2 cut(s)	1488, 1665
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	990, 2279
AspS9I	GGNCC	7 cut(s)	921, 1361, 1795, 2779, 2852, 2900, 2941
AsuC2I	CCSGG	2 cut(s)	346, 600
AsuHPI	GGTGA	9 cut(s)	167, 198, 586, 614, 884, 1359, 1607, 1723, 1923
AsuII	TTCGAA	1 cut(s)	1669
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	4 cut(s)	921, 1361, 1795, 2852
AvrII	CCTAGG	1 cut(s)	317
AxyI	CCTNAGG	2 cut(s)	192, 1896
BaeGI	GKGCMC	2 cut(s)	967, 1885
BalI	TGGCCA	2 cut(s)	722, 890
BanI	GGYRCC	2 cut(s)	962, 2662
BanII	GRGCYC	2 cut(s)	1225, 1299
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	4 cut(s)	629, 1422, 1584, 2491
Bbv12I	GWGCWC	2 cut(s)	615, 1225
BbvCI	CCTCAGC	2 cut(s)	879, 2973
BbvI	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2470
BccI	CCATC	7 cut(s)	18, 262, 299, 552, 1599, 2583, 3040
BceAI	ACGGC	5 cut(s)	148, 883, 1360, 2197, 2766
BcgI	CGANNNNNNTGC	2 cut(s)	2297, 2331
BciVI	GTATCC	2 cut(s)	51, 2152
BclI	TGATCA	1 cut(s)	2641
BcnI	CCSGG	2 cut(s)	346, 600
BcoDI	GTCTC	3 cut(s)	2235, 2809, 3016
BfaI	CTAG	5 cut(s)	29, 318, 1808, 2454, 2670
BfmI	CTRYAG	1 cut(s)	19
BfuI	GTATCC	2 cut(s)	51, 2152
BglI	GCCNNNNNGGC	1 cut(s)	320
BlnI	CCTAGG	1 cut(s)	317
BmcAI	AGTACT	1 cut(s)	524
Bme18I	GGWCC	4 cut(s)	921, 1361, 1795, 2852
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	7 cut(s)	921, 1361, 1795, 2779, 2852, 2900, 2941
BmiI	GGNNCC	5 cut(s)	923, 964, 2473, 2664, 2934
BmtI	GCTAGC	1 cut(s)	32
BoxI	GACNNNNGTC	1 cut(s)	1800
BpiI	GAAGAC	4 cut(s)	629, 1422, 1584, 2491
BplI	GAGNNNNNCTC	2 cut(s)	3013, 3045
BpmI	CTGGAG	4 cut(s)	873, 1079, 2223, 2490
Bpu10I	CCTNAGC	2 cut(s)	879, 2973
Bpu14I	TTCGAA	1 cut(s)	1669
BpuEI	CTTGAG	3 cut(s)	1508, 1775, 2673
BpuMI	CCSGG	2 cut(s)	346, 600
BsaAI	YACGTR	1 cut(s)	2012
BsaI	GGTCTC	3 cut(s)	2235, 2809, 3016
BsaJI	CCNNGG	8 cut(s)	278, 317, 717, 1798, 2414, 2609, 2837, 2928
BsaWI	WCCGGW	3 cut(s)	76, 103, 2226
BsaXI	ACNNNNNCTCC	2 cut(s)	2815, 2845
Bse118I	RCCGGY	2 cut(s)	76, 2938
Bse1I	ACTGG	4 cut(s)	114, 904, 1062, 2861
Bse21I	CCTNAGG	2 cut(s)	192, 1896
Bse3DI	GCAATG	4 cut(s)	515, 676, 765, 2554
BseDI	CCNNGG	8 cut(s)	278, 317, 717, 1798, 2414, 2609, 2837, 2928
BseGI	GGATG	9 cut(s)	187, 563, 700, 1003, 1610, 2056, 2181, 2683, 3032
BseMI	GCAATG	4 cut(s)	515, 676, 765, 2554
BseMII	CTCAG	5 cut(s)	183, 870, 1461, 1887, 2987
BseNI	ACTGG	4 cut(s)	114, 904, 1062, 2861
BseRI	GAGGAG	3 cut(s)	422, 1296, 2449
BseSI	GKGCMC	2 cut(s)	967, 1885
BseXI	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2470
BseYI	CCCAGC	2 cut(s)	2897, 3036
BsgI	GTGCAG	1 cut(s)	2361
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	9 cut(s)	202, 277, 722, 890, 2440, 2781, 2902, 2942, 3045
BshNI	GGYRCC	2 cut(s)	962, 2662
BshTI	ACCGGT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	615, 1225
BsiSI	CCGG	6 cut(s)	77, 104, 346, 599, 2227, 2939
BslFI	GGGAC	3 cut(s)	786, 1818, 2661
BsmAI	GTCTC	3 cut(s)	2235, 2809, 3016
BsmFI	GGGAC	3 cut(s)	786, 1818, 2661
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	9 cut(s)	202, 277, 722, 890, 2440, 2781, 2902, 2942, 3045
Bso31I	GGTCTC	3 cut(s)	2235, 2809, 3016
Bsp119I	TTCGAA	1 cut(s)	1669
Bsp1286I	GDGCHC	5 cut(s)	615, 967, 1225, 1299, 1885
Bsp1407I	TGTACA	2 cut(s)	291, 2299
Bsp143I	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
Bsp19I	CCATGG	1 cut(s)	2414
BspANI	GGCC	9 cut(s)	202, 277, 722, 890, 2440, 2781, 2902, 2942, 3045
BspCNI	CTCAG	5 cut(s)	184, 871, 1462, 1888, 2986
BspHI	TCATGA	1 cut(s)	1492
BspLI	GGNNCC	5 cut(s)	923, 964, 2473, 2664, 2934
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	6 cut(s)	336, 545, 656, 1399, 1916, 2138
BspT104I	TTCGAA	1 cut(s)	1669
BspT107I	GGYRCC	2 cut(s)	962, 2662
BspTNI	GGTCTC	3 cut(s)	2235, 2809, 3016
BsrBI	CCGCTC	1 cut(s)	2504
BsrDI	GCAATG	4 cut(s)	515, 676, 765, 2554
BsrFI	RCCGGY	2 cut(s)	76, 2938
BsrGI	TGTACA	2 cut(s)	291, 2299
BsrI	ACTGG	4 cut(s)	114, 904, 1062, 2861
BssAI	RCCGGY	2 cut(s)	76, 2938
BssECI	CCNNGG	8 cut(s)	278, 317, 717, 1798, 2414, 2609, 2837, 2928
BssMI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
BssT1I	CCWWGG	3 cut(s)	317, 717, 2414
Bst4CI	ACNGT	5 cut(s)	291, 1447, 1845, 2021, 2657
Bst6I	CTCTTC	4 cut(s)	1273, 1620, 1666, 3004
BstAPI	GCANNNNNTGC	2 cut(s)	377, 1778
BstAUI	TGTACA	2 cut(s)	291, 2299
BstBAI	YACGTR	1 cut(s)	2012
BstBI	TTCGAA	1 cut(s)	1669
BstC8I	GCNNGC	9 cut(s)	30, 714, 1144, 1148, 1242, 1423, 1998, 2376, 2571
BstDEI	CTNAG	7 cut(s)	192, 536, 879, 1470, 1896, 2343, 2973
BstDSI	CCRYGG	2 cut(s)	2414, 2609
BstENI	CCTNNNNNAGG	1 cut(s)	1895
BstF5I	GGATG	9 cut(s)	187, 563, 700, 1003, 1610, 2056, 2181, 2683, 3032
BstHHI	GCGC	2 cut(s)	990, 2279
BstKTI	GATC	8 cut(s)	344, 553, 664, 1394, 1789, 1924, 2146, 2644
BstMAI	GTCTC	3 cut(s)	2235, 2809, 3016
BstMBI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
BstMCI	CGRYCG	1 cut(s)	108
BstNSI	RCATGY	3 cut(s)	241, 2166, 2534
BstPAI	GACNNNNGTC	1 cut(s)	1800
BstSFI	CTRYAG	1 cut(s)	19
BstSLI	GKGCMC	2 cut(s)	967, 1885
BstV1I	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2470
BstV2I	GAAGAC	4 cut(s)	629, 1422, 1584, 2491
BstX2I	RGATCY	2 cut(s)	341, 1391
BstXI	CCANNNNNNTGG	1 cut(s)	2897
BstYI	RGATCY	2 cut(s)	341, 1391
Bsu36I	CCTNAGG	2 cut(s)	192, 1896
BsuI	GTATCC	2 cut(s)	51, 2152
BsuRI	GGCC	9 cut(s)	202, 277, 722, 890, 2440, 2781, 2902, 2942, 3045
BtgI	CCRYGG	2 cut(s)	2414, 2609
BtgZI	GCGATG	1 cut(s)	2511
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	9 cut(s)	187, 563, 700, 1003, 1610, 2056, 2181, 2683, 3032
BtsI	GCAGTG	2 cut(s)	1754, 2173
BtsIMutI	CAGTG	6 cut(s)	239, 1055, 1692, 1754, 2026, 2173
Cac8I	GCNNGC	9 cut(s)	30, 714, 1144, 1148, 1242, 1423, 1998, 2376, 2571
CciI	TCATGA	1 cut(s)	1492
CfoI	GCGC	2 cut(s)	990, 2279
Cfr10I	RCCGGY	2 cut(s)	76, 2938
Cfr13I	GGNCC	7 cut(s)	921, 1361, 1795, 2779, 2852, 2900, 2941
CseI	GACGC	2 cut(s)	1247, 1298
Csp6I	GTAC	5 cut(s)	151, 292, 523, 901, 2300
CspAI	ACCGGT	1 cut(s)	76
CviQI	GTAC	5 cut(s)	151, 292, 523, 901, 2300
DdeI	CTNAG	7 cut(s)	192, 536, 879, 1470, 1896, 2343, 2973
DpnI	GATC	8 cut(s)	343, 552, 663, 1393, 1788, 1923, 2145, 2643
DpnII	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
DraI	TTTAAA	1 cut(s)	1840
DrdI	GACNNNNNNGTC	1 cut(s)	2267
DseDI	GACNNNNNNGTC	1 cut(s)	2267
EaeI	YGGCCR	3 cut(s)	720, 888, 3043
Eam1104I	CTCTTC	4 cut(s)	1273, 1620, 1666, 3004
EarI	CTCTTC	4 cut(s)	1273, 1620, 1666, 3004
EciI	GGCGGA	1 cut(s)	2015
Ecl136II	GAGCTC	1 cut(s)	1223
Eco130I	CCWWGG	3 cut(s)	317, 717, 2414
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	1225, 1299
Eco31I	GGTCTC	3 cut(s)	2235, 2809, 3016
Eco32I	GATATC	1 cut(s)	1130
Eco47I	GGWCC	4 cut(s)	921, 1361, 1795, 2852
Eco53kI	GAGCTC	1 cut(s)	1223
Eco57I	CTGAAG	6 cut(s)	408, 1256, 1341, 1416, 1593, 1716
Eco81I	CCTNAGG	2 cut(s)	192, 1896
EcoICRI	GAGCTC	1 cut(s)	1223
EcoNI	CCTNNNNNAGG	1 cut(s)	1895
EcoO109I	RGGNCCY	3 cut(s)	1361, 1795, 2852
EcoRV	GATATC	1 cut(s)	1130
EcoT14I	CCWWGG	3 cut(s)	317, 717, 2414
EcoT38I	GRGCYC	2 cut(s)	1225, 1299
ErhI	CCWWGG	3 cut(s)	317, 717, 2414
FaqI	GGGAC	3 cut(s)	786, 1818, 2661
FauI	CCCGC	2 cut(s)	763, 1155
FauNDI	CATATG	4 cut(s)	1047, 2273, 2443, 2584
FbaI	TGATCA	1 cut(s)	2641
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	9 cut(s)	174, 570, 707, 1010, 1617, 2043, 2188, 2670, 3019
FriOI	GRGCYC	2 cut(s)	1225, 1299
FspBI	CTAG	5 cut(s)	29, 318, 1808, 2454, 2670
FspI	TGCGCA	1 cut(s)	2278
GlaI	GCGC	2 cut(s)	989, 2278
GsaI	CCCAGC	2 cut(s)	2901, 3040
GsuI	CTGGAG	4 cut(s)	873, 1079, 2223, 2490
HaeIII	GGCC	9 cut(s)	202, 277, 722, 890, 2440, 2781, 2902, 2942, 3045
HapII	CCGG	6 cut(s)	77, 104, 346, 599, 2227, 2939
HgaI	GACGC	2 cut(s)	1247, 1298
HhaI	GCGC	2 cut(s)	990, 2279
Hin6I	GCGC	2 cut(s)	988, 2277
HinP1I	GCGC	2 cut(s)	988, 2277
HincII	GTYRAC	2 cut(s)	109, 1805
HindII	GTYRAC	2 cut(s)	109, 1805
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	8 cut(s)	100, 331, 464, 577, 955, 1063, 1313, 2399
HpaII	CCGG	6 cut(s)	77, 104, 346, 599, 2227, 2939
HphI	GGTGA	9 cut(s)	167, 198, 586, 614, 884, 1359, 1607, 1723, 1923
Hpy166II	GTNNAC	4 cut(s)	109, 1598, 1805, 2528
Hpy8I	GTNNAC	4 cut(s)	109, 1598, 1805, 2528
Hpy99I	CGWCG	5 cut(s)	53, 56, 59, 92, 95
HpyCH4III	ACNGT	5 cut(s)	291, 1447, 1845, 2021, 2657
HpyCH4IV	ACGT	4 cut(s)	93, 673, 1657, 2011
HpyF3I	CTNAG	7 cut(s)	192, 536, 879, 1470, 1896, 2343, 2973
HpySE526I	ACGT	4 cut(s)	93, 673, 1657, 2011
HspAI	GCGC	2 cut(s)	988, 2277
Ksp22I	TGATCA	1 cut(s)	2641
Kzo9I	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
LmnI	GCTCC	4 cut(s)	610, 1168, 2471, 2836
Lsp1109I	GCAGC	8 cut(s)	346, 383, 387, 395, 805, 1441, 1861, 2470
MaeI	CTAG	5 cut(s)	29, 318, 1808, 2454, 2670
MaeII	ACGT	4 cut(s)	93, 673, 1657, 2011
MaeIII	GTNAC	4 cut(s)	1688, 2044, 2759, 2885
MalI	GATC	8 cut(s)	343, 552, 663, 1393, 1788, 1923, 2145, 2643
MbiI	CCGCTC	1 cut(s)	2504
MboI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
MfeI	CAATTG	3 cut(s)	300, 510, 2102
MflI	RGATCY	2 cut(s)	341, 1391
MhlI	GDGCHC	5 cut(s)	615, 967, 1225, 1299, 1885
MlsI	TGGCCA	2 cut(s)	722, 890
MluNI	TGGCCA	2 cut(s)	722, 890
MmeI	TCCRAC	3 cut(s)	1006, 1168, 2982
Mox20I	TGGCCA	2 cut(s)	722, 890
MroXI	GAANNNNTTC	2 cut(s)	1488, 1665
MscI	TGGCCA	2 cut(s)	722, 890
MslI	CAYNNNNRTG	2 cut(s)	1747, 2790
Msp20I	TGGCCA	2 cut(s)	722, 890
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	6 cut(s)	77, 104, 346, 599, 2227, 2939
MunI	CAATTG	3 cut(s)	300, 510, 2102
Mva1269I	GAATGC	1 cut(s)	448
NciI	CCSGG	2 cut(s)	346, 600
NcoI	CCATGG	1 cut(s)	2414
NdeI	CATATG	4 cut(s)	1047, 2273, 2443, 2584
NdeII	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
NheI	GCTAGC	1 cut(s)	28
NlaIV	GGNNCC	5 cut(s)	923, 964, 2473, 2664, 2934
NmuCI	GTSAC	1 cut(s)	2759
NsbI	TGCGCA	1 cut(s)	2278
NspI	RCATGY	3 cut(s)	241, 2166, 2534
NspV	TTCGAA	1 cut(s)	1669
PagI	TCATGA	1 cut(s)	1492
PceI	AGGCCT	1 cut(s)	202
PciI	ACATGT	1 cut(s)	2530
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	2 cut(s)	1488, 1665
PfeI	GAWTC	8 cut(s)	100, 331, 464, 577, 955, 1063, 1313, 2399
PflMI	CCANNNNNTGG	4 cut(s)	2201, 2659, 2950, 2996
PfoI	TCCNGGA	4 cut(s)	344, 481, 553, 2467
PinAI	ACCGGT	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	2012
PpuMI	RGGWCCY	3 cut(s)	1361, 1795, 2852
PscI	ACATGT	1 cut(s)	2530
PshAI	GACNNNNGTC	1 cut(s)	1800
PsiI	TTATAA	1 cut(s)	2871
Psp124BI	GAGCTC	1 cut(s)	1225
Psp5II	RGGWCCY	3 cut(s)	1361, 1795, 2852
PspFI	CCCAGC	2 cut(s)	2897, 3036
PspN4I	GGNNCC	5 cut(s)	923, 964, 2473, 2664, 2934
PspPI	GGNCC	7 cut(s)	921, 1361, 1795, 2779, 2852, 2900, 2941
PspPPI	RGGWCCY	3 cut(s)	1361, 1795, 2852
PsuI	RGATCY	2 cut(s)	341, 1391
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	5 cut(s)	152, 293, 524, 902, 2301
RsaNI	GTAC	5 cut(s)	151, 292, 523, 901, 2300
RseI	CAYNNNNRTG	2 cut(s)	1747, 2790
SacI	GAGCTC	1 cut(s)	1225
SalI	GTCGAC	1 cut(s)	107
Sau3AI	GATC	8 cut(s)	341, 550, 661, 1391, 1786, 1921, 2143, 2641
Sau96I	GGNCC	7 cut(s)	921, 1361, 1795, 2779, 2852, 2900, 2941
ScaI	AGTACT	1 cut(s)	524
SduI	GDGCHC	5 cut(s)	615, 967, 1225, 1299, 1885
SfcI	CTRYAG	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	1669
SinI	GGWCC	4 cut(s)	921, 1361, 1795, 2852
SmiMI	CAYNNNNRTG	2 cut(s)	1747, 2790
SmlI	CTYRAG	3 cut(s)	1523, 1790, 2688
SmoI	CTYRAG	3 cut(s)	1523, 1790, 2688
SseBI	AGGCCT	1 cut(s)	202
SspI	AATATT	3 cut(s)	916, 935, 1209
SspMI	CTAG	5 cut(s)	29, 318, 1808, 2454, 2670
SstI	GAGCTC	1 cut(s)	1225
StuI	AGGCCT	1 cut(s)	202
StyI	CCWWGG	3 cut(s)	317, 717, 2414
TaaI	ACNGT	5 cut(s)	291, 1447, 1845, 2021, 2657
TaiI	ACGT	4 cut(s)	96, 676, 1660, 2014
TaqII	GACCGA	1 cut(s)	1790
TatI	WGTACW	3 cut(s)	291, 522, 2299
TauI	GCSGC	5 cut(s)	277, 383, 2504, 2905, 3048
TfiI	GAWTC	8 cut(s)	100, 331, 464, 577, 955, 1063, 1313, 2399
TscAI	CASTG	6 cut(s)	239, 1062, 1699, 1754, 2026, 2173
TseFI	GTSAC	1 cut(s)	2759
TseI	GCWGC	8 cut(s)	359, 371, 383, 400, 818, 1454, 1874, 2458
Tsp45I	GTSAC	1 cut(s)	2759
TspGWI	ACGGA	1 cut(s)	859
TspRI	CASTG	6 cut(s)	239, 1062, 1699, 1754, 2026, 2173
Van91I	CCANNNNNTGG	4 cut(s)	2201, 2659, 2950, 2996
VpaK11BI	GGWCC	4 cut(s)	921, 1361, 1795, 2852
XagI	CCTNNNNNAGG	1 cut(s)	1895
XapI	RAATTY	5 cut(s)	1109, 1153, 1665, 2704, 2752
XceI	RCATGY	3 cut(s)	241, 2166, 2534
XmaJI	CCTAGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	2 cut(s)	1488, 1665
XspI	CTAG	5 cut(s)	29, 318, 1808, 2454, 2670
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.