Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Forward (+)

60853139 .. 60860984

Gene Structure 7846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG427700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGTTTGACTACATAGATAGGCTTTTTGTGATGGTGCGGCCTCGGAAGCTACTGTACATGGCAATTGATGGTGTTGCCCCTAGGGCGAAAATGAATCAACAGAGATCCCGGCGGTTTAGAGCTGCTAAAGATGCAGCAGATGCGGCAGCTGAAGAAGAAAGGCTGCGTGAGGAGTTTGAAATGGAGGGAAGAAAGCTTCCACCTAAACTGCATTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCATTTATGGCTGTTTTGTCAATTGCATTGCAGTACTATATTCATCTTAGATTAAATAACGATCCTGGATGGAAAAATGTTAAGGTCATTCTTTCCGATGCAAATGTTCCGGGTGAAGGGGAGCACAAGGTTATGTCATACATTCGTCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACACGTCATTGCCTGTATGGTTTGGATGCCGATTTAATTATGCTTGCCTTGGCCACCCATGAAGTTCATTTCTCCATTCTTCGAGAGGTTGTTTTCGTCGCTGGACAGCAGGACAAGTGCTTCCTGTGTGGTCAGGTGGGTCATTTAGCTGCCAGTTGTGAAGGAAAGGCAAAACGGAAGGCTGGAGAGCTTGATGAGAAAGGTGATGCCGAGGCTGTGGCCAAGAAGCCGTACCAGGGTGCAATCAACTTGCTTTTGGCTGTATATAAAAAGGAATTTAGGGGAATGGGGGGATATCTGACTAATGCAAGCAAGCCAAATTTGAGGCGGGTGGAGCATTTCATTCAGGCAGTTGGAAGTTATGAAGATAAAATATTCCAGAAAAGAGCTCAACTGCATCTGAAGCAAGCAGAAAGAATAAAGCGTCAAAAGGCACAAGCTCGAAGAGGAGATGACGCAGAGCCCCAAGTGCAACCAGATTCTTTAGTTGCAGTTAATCGGTTTCATGGTTCTCGTCTTGCTTCAGGTCCTTCACCTGTGCCGTTTCAACAATCTGGATCTGGTAGAGGAAATCCTCAAAAGGTTGCACGCTTGTCTTCAGAGGCATCAACTGTCGGTGCTGCTATTGTTGAAGCTGAGAACATTCTTGAAGATGTTCATGAAAACAAAGAAGATTTGAAAATAAAGCTCAAGGAGGTTCTTCGTGAGAAATCTGATGCTTTTAACTCTAAAAATCCTGAAGAAGACAAGGTTAAATTGGGTGAACCTGGATGGAGAGAGAGGTATTATGAAGAGAAGTTTAATGCAAAAACTCCCGAAGAACGTGAAGCAATTCGAAGAGATGTTGTTTTGCGTTACACTGAAGGTCTGTGTTGGGTGATGCACTATTATTATGAAGGGGTTTGTTCATGGCAGTGGTTTTACCCTTACCATTATGCGCCCTTTGCTTCTGATCTCAAGGACCTCGGTCAACTAGATATAAGTTTTGAATTGGGCAGTCCCTTTAAACCGTTCAATCAGCTGTTAGGGGTTTTTCCTGCTGCAAGTGCCCATGCCCTTCCTGAGGCATACAGGAAGCTGATGACTGATCCAAACTCACCTCTTATTGATTTTTACCCTACTGACTTTGAAGTGGATATGAATGGGAAACGATTTGCATGGCAGGGTATTGCAAAACTCCCTTTCATTGATGAAGTCCGTCTTCTTTCTGAGGTTGAAAAACTTGAACATACATTAACGGAGGAGGAATCACACAGAAACAGTGTGATGTTTGAGATGCTCTTTGTTACATCTTCTCATCCTCTCTCTGTGTGCATATATTCTCTTGACAATCGCTGTAAACAATTGACAGACAAAGAGCGTGTTGAGTTTAAGGAACAAATTGATCCCAAATACAGTGAAGGGATGAACGGCTATCTATCTCCATGTGCTGGAGAGCCTTGTCCTCCCGTTTTCCGATCTCCTGTTGAAAGCATGGAGGATATAATGGACAACCAAGTCATATGCGCAATATACAGACTACCAGATGTACATGAGCATATAACTCGACCACCAGCAGGGGTCATTTTCCCTAAGAAGATTGTGTCATCGGGGGATATGAAGCCTGCACCTGTTTTGTGGCATGAGGATTCAGGGAGGAAGCCATGGCATGACAATTCGGGGAGGAGGCCATATGAAAGTTCTAGGCAGCACCCTCCTGGAGCCATTTCCGGAAGACAGCTTGGCGATGCCGCTCATCGACTTGTTGTTAATAGTTTACATGCTAAGGCAAACAGCAATGGGTATGGCAATCAGATGCCTGCCCATCAACCATATGCCGAACCTCCATATTACCCACCACGCGCTTCCTACGCAAGTAATGGAAGCTATGATCAGGGACACCACAGTATGGCACCACCTAGAACATTCCAGCATCCTCAAGAAGTGCAACACCAAAATTCCTACCACCCTCCGAATAGACCTCATTCTCAACATTATGAAAGAAATTCTGGTCACTCGTACTATCAGTCGGCCCGTCATCAGAATGGTGGAATTGCTTACCCCCAGAGACCAATTACACCAGCTCCACCAGGGGTCAATCCAGGTCCCTATCCAGTTGGTTATAACAACTATCAGAGTTTAGGGCCGCCTGGTTATCAAGGCATTGATGCCTGGGTTCCACCGCCCCAGAATATGGGCAGAGGATATGGTCGTCCTCAGCAATCTGGAAACCCATACTCTGGATTGGACAGAAGAGGAAATAGGAGACCACCTCCATCCCAGCATGGCCGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

902

Amino Acids

102.09

Weight (kDa)

8.55

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 173	1.2e-76	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	223 - 677	7.1e-140	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2535
AasI	GACNNNNNNGTC	1 cut(s)	1928
Acc16I	TGCGCA	1 cut(s)	1939
AccB1I	GGYRCC	1 cut(s)	2323
AccB7I	CCANNNNNTGG	4 cut(s)	1862, 2320, 2605, 2651
AccBSI	CCGCTC	1 cut(s)	2165
AccII	CGCG	1 cut(s)	2274
AccIII	TCCGGA	1 cut(s)	2141
AciI	CCGC	8 cut(s)	37, 112, 143, 760, 2163, 2558, 2594, 2701
AclWI	GGATC	6 cut(s)	99, 308, 419, 997, 1514, 1811
AcoI	YGGCCR	3 cut(s)	483, 651, 2698
AcsI	RAATTY	4 cut(s)	707, 751, 2368, 2416
AcuI	CTGAAG	6 cut(s)	171, 854, 939, 1014, 1191, 1314
AfaI	GTAC	5 cut(s)	56, 287, 665, 1962, 2432
AfiI	CCNNNNNNNGG	8 cut(s)	368, 668, 1495, 1862, 1988, 2320, 2605, 2651
AflIII	ACRYGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	437
Alw21I	GWGCWC	2 cut(s)	378, 823
Alw26I	GTCTC	2 cut(s)	2473, 2671
AlwI	GGATC	6 cut(s)	99, 308, 419, 997, 1514, 1811
Aor13HI	TCCGGA	1 cut(s)	2141
AoxI	GGCC	7 cut(s)	38, 483, 651, 2099, 2442, 2555, 2698
ApeKI	GCWGC	8 cut(s)	122, 134, 146, 163, 581, 1052, 1472, 2119
ApoI	RAATTY	4 cut(s)	707, 751, 2368, 2416
Asp700I	GAANNNNTTC	2 cut(s)	1086, 1263
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	3 cut(s)	1372, 1940, 2276
AspS9I	GGNCC	5 cut(s)	959, 1393, 2443, 2516, 2555
AsuC2I	CCSGG	2 cut(s)	109, 363
AsuHPI	GGTGA	6 cut(s)	377, 647, 957, 1205, 1321, 1521
AsuII	TTCGAA	1 cut(s)	1267
AvaII	GGWCC	3 cut(s)	959, 1393, 2516
AvrII	CCTAGG	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	1494
BaeGI	GKGCMC	1 cut(s)	1483
BalI	TGGCCA	2 cut(s)	485, 653
BanI	GGYRCC	1 cut(s)	2323
BanII	GRGCYC	2 cut(s)	823, 897
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BbsI	GAAGAC	5 cut(s)	392, 1020, 1182, 1625, 2152
Bbv12I	GWGCWC	2 cut(s)	378, 823
BbvCI	CCTCAGC	1 cut(s)	2628
BbvI	GCAGC	8 cut(s)	109, 146, 150, 158, 568, 1039, 1459, 2131
BccI	CCATC	6 cut(s)	25, 62, 315, 1197, 2244, 2695
BceAI	ACGGC	3 cut(s)	646, 958, 1858
BcgI	CGANNNNNNTGC	2 cut(s)	1958, 1992
BclI	TGATCA	1 cut(s)	2302
BcnI	CCSGG	2 cut(s)	109, 363
BcoDI	GTCTC	2 cut(s)	2473, 2671
BfaI	CTAG	4 cut(s)	81, 1406, 2115, 2331
BglI	GCCNNNNNGGC	1 cut(s)	83
BlnI	CCTAGG	1 cut(s)	80
BmcAI	AGTACT	1 cut(s)	287
Bme18I	GGWCC	3 cut(s)	959, 1393, 2516
BmgBI	CACGTC	1 cut(s)	437
BmgT120I	GGNCC	5 cut(s)	959, 1393, 2443, 2516, 2555
BmiI	GGNNCC	4 cut(s)	2134, 2325, 2518, 2589
BoxI	GACNNNNGTC	1 cut(s)	1398
BpiI	GAAGAC	5 cut(s)	392, 1020, 1182, 1625, 2152
BplI	GAGNNNNNCTC	2 cut(s)	2668, 2700
BpmI	CTGGAG	3 cut(s)	636, 1884, 2151
Bpu10I	CCTNAGC	2 cut(s)	2196, 2628
Bpu14I	TTCGAA	1 cut(s)	1267
BpuEI	CTTGAG	3 cut(s)	1106, 1373, 2334
BpuMI	CCSGG	2 cut(s)	109, 363
BsaI	GGTCTC	2 cut(s)	2473, 2671
BsaJI	CCNNGG	9 cut(s)	41, 80, 480, 642, 667, 1396, 2075, 2501, 2583
BsaWI	WCCGGW	1 cut(s)	2141
BsaXI	ACNNNNNCTCC	2 cut(s)	2479, 2509
Bsc4I	CCNNNNNNNGG	8 cut(s)	368, 668, 1495, 1862, 1988, 2320, 2605, 2651
Bse1I	ACTGG	2 cut(s)	585, 2525
Bse21I	CCTNAGG	1 cut(s)	1494
Bse3DI	GCAATG	3 cut(s)	278, 439, 2215
BseAI	TCCGGA	1 cut(s)	2141
BseDI	CCNNGG	9 cut(s)	41, 80, 480, 642, 667, 1396, 2075, 2501, 2583
BseGI	GGATG	7 cut(s)	326, 463, 1208, 1729, 1842, 2344, 2687
BseLI	CCNNNNNNNGG	8 cut(s)	368, 668, 1495, 1862, 1988, 2320, 2605, 2651
BseMI	GCAATG	3 cut(s)	278, 439, 2215
BseMII	CTCAG	4 cut(s)	1059, 1485, 1632, 2642
BseNI	ACTGG	2 cut(s)	585, 2525
BseRI	GAGGAG	4 cut(s)	185, 894, 1688, 2110
BseSI	GKGCMC	1 cut(s)	1483
BseXI	GCAGC	8 cut(s)	109, 146, 150, 158, 568, 1039, 1459, 2131
BseYI	CCCAGC	1 cut(s)	2691
BsgI	GTGCAG	1 cut(s)	2022
Bsh1236I	CGCG	1 cut(s)	2274
BshFI	GGCC	7 cut(s)	40, 485, 653, 2101, 2444, 2557, 2700
BshNI	GGYRCC	1 cut(s)	2323
BsiHKAI	GWGCWC	2 cut(s)	378, 823
BsiSI	CCGG	3 cut(s)	109, 362, 2142
BslFI	GGGAC	3 cut(s)	1416, 2322, 2502
BslI	CCNNNNNNNGG	8 cut(s)	368, 668, 1495, 1862, 1988, 2320, 2605, 2651
BsmAI	GTCTC	2 cut(s)	2473, 2671
BsmFI	GGGAC	3 cut(s)	1416, 2322, 2502
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	7 cut(s)	40, 485, 653, 2101, 2444, 2557, 2700
Bso31I	GGTCTC	2 cut(s)	2473, 2671
Bsp119I	TTCGAA	1 cut(s)	1267
Bsp1286I	GDGCHC	4 cut(s)	378, 823, 897, 1483
Bsp13I	TCCGGA	1 cut(s)	2141
Bsp1407I	TGTACA	2 cut(s)	54, 1960
Bsp143I	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
Bsp19I	CCATGG	1 cut(s)	2075
BspACI	CCGC	8 cut(s)	37, 112, 143, 760, 2163, 2558, 2594, 2701
BspANI	GGCC	7 cut(s)	40, 485, 653, 2101, 2444, 2557, 2700
BspCNI	CTCAG	4 cut(s)	1060, 1486, 1633, 2641
BspEI	TCCGGA	1 cut(s)	2141
BspFNI	CGCG	1 cut(s)	2274
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	4 cut(s)	2134, 2325, 2518, 2589
BspPI	GGATC	6 cut(s)	99, 308, 419, 997, 1514, 1811
BspT104I	TTCGAA	1 cut(s)	1267
BspT107I	GGYRCC	1 cut(s)	2323
BspTNI	GGTCTC	2 cut(s)	2473, 2671
BsrBI	CCGCTC	1 cut(s)	2165
BsrDI	GCAATG	3 cut(s)	278, 439, 2215
BsrGI	TGTACA	2 cut(s)	54, 1960
BsrI	ACTGG	2 cut(s)	585, 2525
BssECI	CCNNGG	9 cut(s)	41, 80, 480, 642, 667, 1396, 2075, 2501, 2583
BssMI	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
BssT1I	CCWWGG	3 cut(s)	80, 480, 2075
Bst4CI	ACNGT	6 cut(s)	54, 1045, 1443, 1694, 1829, 2318
Bst6I	CTCTTC	4 cut(s)	871, 1218, 1264, 2659
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstAUI	TGTACA	2 cut(s)	54, 1960
BstBI	TTCGAA	1 cut(s)	1267
BstC8I	GCNNGC	7 cut(s)	477, 742, 746, 840, 1021, 2037, 2232
BstDEI	CTNAG	7 cut(s)	299, 1068, 1494, 1641, 2004, 2196, 2628
BstDSI	CCRYGG	1 cut(s)	2075
BstENI	CCTNNNNNAGG	1 cut(s)	1493
BstF5I	GGATG	7 cut(s)	326, 463, 1208, 1729, 1842, 2344, 2687
BstFNI	CGCG	1 cut(s)	2274
BstHHI	GCGC	3 cut(s)	1372, 1940, 2276
BstKTI	GATC	9 cut(s)	107, 316, 427, 992, 1387, 1522, 1819, 1892, 2305
BstMAI	GTCTC	2 cut(s)	2473, 2671
BstMBI	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
BstNSI	RCATGY	1 cut(s)	2195
BstPAI	GACNNNNGTC	1 cut(s)	1398
BstSLI	GKGCMC	1 cut(s)	1483
BstUI	CGCG	1 cut(s)	2274
BstV1I	GCAGC	8 cut(s)	109, 146, 150, 158, 568, 1039, 1459, 2131
BstV2I	GAAGAC	5 cut(s)	392, 1020, 1182, 1625, 2152
BstX2I	RGATCY	2 cut(s)	104, 989
BstYI	RGATCY	2 cut(s)	104, 989
Bsu36I	CCTNAGG	1 cut(s)	1494
BsuRI	GGCC	7 cut(s)	40, 485, 653, 2101, 2444, 2557, 2700
BtgI	CCRYGG	1 cut(s)	2075
BtgZI	GCGATG	1 cut(s)	2172
BtrI	CACGTC	1 cut(s)	437
BtsCI	GGATG	7 cut(s)	326, 463, 1208, 1729, 1842, 2344, 2687
BtsI	GCAGTG	1 cut(s)	1352
BtsIMutI	CAGTG	4 cut(s)	1290, 1352, 1699, 1834
Cac8I	GCNNGC	7 cut(s)	477, 742, 746, 840, 1021, 2037, 2232
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	3 cut(s)	1372, 1940, 2276
Cfr13I	GGNCC	5 cut(s)	959, 1393, 2443, 2516, 2555
CseI	GACGC	2 cut(s)	845, 896
Csp6I	GTAC	5 cut(s)	55, 286, 664, 1961, 2431
CviQI	GTAC	5 cut(s)	55, 286, 664, 1961, 2431
DdeI	CTNAG	7 cut(s)	299, 1068, 1494, 1641, 2004, 2196, 2628
DpnI	GATC	9 cut(s)	106, 315, 426, 991, 1386, 1521, 1818, 1891, 2304
DpnII	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
DraI	TTTAAA	1 cut(s)	1438
DrdI	GACNNNNNNGTC	1 cut(s)	1928
DseDI	GACNNNNNNGTC	1 cut(s)	1928
EaeI	YGGCCR	3 cut(s)	483, 651, 2698
Eam1104I	CTCTTC	4 cut(s)	871, 1218, 1264, 2659
EarI	CTCTTC	4 cut(s)	871, 1218, 1264, 2659
Ecl136II	GAGCTC	1 cut(s)	821
Eco130I	CCWWGG	3 cut(s)	80, 480, 2075
Eco24I	GRGCYC	2 cut(s)	823, 897
Eco31I	GGTCTC	2 cut(s)	2473, 2671
Eco32I	GATATC	1 cut(s)	728
Eco47I	GGWCC	3 cut(s)	959, 1393, 2516
Eco53kI	GAGCTC	1 cut(s)	821
Eco57I	CTGAAG	6 cut(s)	171, 854, 939, 1014, 1191, 1314
Eco81I	CCTNAGG	1 cut(s)	1494
EcoICRI	GAGCTC	1 cut(s)	821
EcoNI	CCTNNNNNAGG	1 cut(s)	1493
EcoO109I	RGGNCCY	3 cut(s)	959, 1393, 2516
EcoRV	GATATC	1 cut(s)	728
EcoT14I	CCWWGG	3 cut(s)	80, 480, 2075
EcoT38I	GRGCYC	2 cut(s)	823, 897
ErhI	CCWWGG	3 cut(s)	80, 480, 2075
FalI	AAGNNNNNCTT	2 cut(s)	1617, 1649
FaqI	GGGAC	3 cut(s)	1416, 2322, 2502
FauI	CCCGC	1 cut(s)	753
FauNDI	CATATG	3 cut(s)	1934, 2104, 2245
FbaI	TGATCA	1 cut(s)	2302
FokI	GGATG	7 cut(s)	333, 470, 1215, 1716, 1849, 2331, 2674
FriOI	GRGCYC	2 cut(s)	823, 897
FspBI	CTAG	4 cut(s)	81, 1406, 2115, 2331
FspI	TGCGCA	1 cut(s)	1939
GlaI	GCGC	3 cut(s)	1371, 1939, 2275
GsaI	CCCAGC	1 cut(s)	2695
GsuI	CTGGAG	3 cut(s)	636, 1884, 2151
HaeIII	GGCC	7 cut(s)	40, 485, 653, 2101, 2444, 2557, 2700
HapII	CCGG	3 cut(s)	109, 362, 2142
HgaI	GACGC	2 cut(s)	845, 896
HhaI	GCGC	3 cut(s)	1372, 1940, 2276
Hin6I	GCGC	3 cut(s)	1370, 1938, 2274
HinP1I	GCGC	3 cut(s)	1370, 1938, 2274
HincII	GTYRAC	1 cut(s)	1403
HindII	GTYRAC	1 cut(s)	1403
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	5 cut(s)	94, 227, 911, 1679, 2060
HpaII	CCGG	3 cut(s)	109, 362, 2142
HphI	GGTGA	6 cut(s)	377, 647, 957, 1205, 1321, 1521
Hpy166II	GTNNAC	4 cut(s)	1196, 1403, 1772, 2189
Hpy8I	GTNNAC	4 cut(s)	1196, 1403, 1772, 2189
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	8 cut(s)	362, 587, 604, 972, 1289, 1322, 1499, 1826
HpyCH4III	ACNGT	6 cut(s)	54, 1045, 1443, 1694, 1829, 2318
HpyCH4IV	ACGT	2 cut(s)	436, 1255
HpyF3I	CTNAG	7 cut(s)	299, 1068, 1494, 1641, 2004, 2196, 2628
HpySE526I	ACGT	2 cut(s)	436, 1255
HspAI	GCGC	3 cut(s)	1370, 1938, 2274
Kpn2I	TCCGGA	1 cut(s)	2141
Ksp22I	TGATCA	1 cut(s)	2302
Kzo9I	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
LmnI	GCTCC	4 cut(s)	373, 766, 2132, 2500
Lsp1109I	GCAGC	8 cut(s)	109, 146, 150, 158, 568, 1039, 1459, 2131
MaeI	CTAG	4 cut(s)	81, 1406, 2115, 2331
MaeII	ACGT	2 cut(s)	436, 1255
MaeIII	GTNAC	3 cut(s)	1286, 1717, 2423
MalI	GATC	9 cut(s)	106, 315, 426, 991, 1386, 1521, 1818, 1891, 2304
MbiI	CCGCTC	1 cut(s)	2165
MboI	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
MfeI	CAATTG	3 cut(s)	63, 273, 1775
MflI	RGATCY	2 cut(s)	104, 989
MhlI	GDGCHC	4 cut(s)	378, 823, 897, 1483
MlsI	TGGCCA	2 cut(s)	485, 653
MluNI	TGGCCA	2 cut(s)	485, 653
MmeI	TCCRAC	1 cut(s)	766
Mox20I	TGGCCA	2 cut(s)	485, 653
MroI	TCCGGA	1 cut(s)	2141
MroXI	GAANNNNTTC	2 cut(s)	1086, 1263
MscI	TGGCCA	2 cut(s)	485, 653
MslI	CAYNNNNRTG	2 cut(s)	1345, 2454
Msp20I	TGGCCA	2 cut(s)	485, 653
MspA1I	CMGCKG	2 cut(s)	149, 1453
MspI	CCGG	3 cut(s)	109, 362, 2142
MunI	CAATTG	3 cut(s)	63, 273, 1775
Mva1269I	GAATGC	1 cut(s)	211
MvnI	CGCG	1 cut(s)	2274
NciI	CCSGG	2 cut(s)	109, 363
NcoI	CCATGG	1 cut(s)	2075
NdeI	CATATG	3 cut(s)	1934, 2104, 2245
NdeII	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
NlaIV	GGNNCC	4 cut(s)	2134, 2325, 2518, 2589
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	2423
NsbI	TGCGCA	1 cut(s)	1939
NspI	RCATGY	1 cut(s)	2195
NspV	TTCGAA	1 cut(s)	1267
PagI	TCATGA	1 cut(s)	1090
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	2 cut(s)	1086, 1263
PfeI	GAWTC	5 cut(s)	94, 227, 911, 1679, 2060
PflMI	CCANNNNNTGG	4 cut(s)	1862, 2320, 2605, 2651
PfoI	TCCNGGA	3 cut(s)	244, 316, 2128
PpuMI	RGGWCCY	3 cut(s)	959, 1393, 2516
PshAI	GACNNNNGTC	1 cut(s)	1398
PsiI	TTATAA	1 cut(s)	2535
Psp124BI	GAGCTC	1 cut(s)	823
Psp5II	RGGWCCY	3 cut(s)	959, 1393, 2516
PspFI	CCCAGC	1 cut(s)	2691
PspN4I	GGNNCC	4 cut(s)	2134, 2325, 2518, 2589
PspPI	GGNCC	5 cut(s)	959, 1393, 2443, 2516, 2555
PspPPI	RGGWCCY	3 cut(s)	959, 1393, 2516
PsuI	RGATCY	2 cut(s)	104, 989
PvuII	CAGCTG	2 cut(s)	149, 1453
RsaI	GTAC	5 cut(s)	56, 287, 665, 1962, 2432
RsaNI	GTAC	5 cut(s)	55, 286, 664, 1961, 2431
RseI	CAYNNNNRTG	2 cut(s)	1345, 2454
SacI	GAGCTC	1 cut(s)	823
Sau3AI	GATC	9 cut(s)	104, 313, 424, 989, 1384, 1519, 1816, 1889, 2302
Sau96I	GGNCC	5 cut(s)	959, 1393, 2443, 2516, 2555
ScaI	AGTACT	1 cut(s)	287
SduI	GDGCHC	4 cut(s)	378, 823, 897, 1483
SfuI	TTCGAA	1 cut(s)	1267
SinI	GGWCC	3 cut(s)	959, 1393, 2516
SmiMI	CAYNNNNRTG	2 cut(s)	1345, 2454
SmlI	CTYRAG	3 cut(s)	1121, 1388, 2349
SmoI	CTYRAG	3 cut(s)	1121, 1388, 2349
SsiI	CCGC	8 cut(s)	37, 112, 143, 760, 2163, 2558, 2594, 2701
SspI	AATATT	1 cut(s)	807
SspMI	CTAG	4 cut(s)	81, 1406, 2115, 2331
SstI	GAGCTC	1 cut(s)	823
StyI	CCWWGG	3 cut(s)	80, 480, 2075
TaaI	ACNGT	6 cut(s)	54, 1045, 1443, 1694, 1829, 2318
TaiI	ACGT	2 cut(s)	439, 1258
TaqI	TCGA	5 cut(s)	514, 874, 1267, 1978, 2170
TaqII	GACCGA	1 cut(s)	1388
TatI	WGTACW	3 cut(s)	54, 285, 1960
TauI	GCSGC	5 cut(s)	40, 146, 2165, 2560, 2703
TfiI	GAWTC	5 cut(s)	94, 227, 911, 1679, 2060
TscAI	CASTG	4 cut(s)	1297, 1352, 1699, 1834
TseFI	GTSAC	1 cut(s)	2423
TseI	GCWGC	8 cut(s)	122, 134, 146, 163, 581, 1052, 1472, 2119
Tsp45I	GTSAC	1 cut(s)	2423
TspGWI	ACGGA	3 cut(s)	622, 1619, 1685
TspRI	CASTG	4 cut(s)	1297, 1352, 1699, 1834
Van91I	CCANNNNNTGG	4 cut(s)	1862, 2320, 2605, 2651
VpaK11BI	GGWCC	3 cut(s)	959, 1393, 2516
XagI	CCTNNNNNAGG	1 cut(s)	1493
XapI	RAATTY	4 cut(s)	707, 751, 2368, 2416
XceI	RCATGY	1 cut(s)	2195
XmaJI	CCTAGG	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	1086, 1263
XspI	CTAG	4 cut(s)	81, 1406, 2115, 2331
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.