Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002185

Physical Location & Seq

Genomic Coordinates Forward (+)

6469376 .. 6473179

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGGGGGTTCCGGCTTTCTATAGATGGTTAGCGGAGAAGTATCCGCTTGTGGTTGTAGATGTGGTGGAGGAGGAACCGATTGTGATTGATGATGTTTCGATTCCGGTTGACACCACGAAACCGAACCCGAATGGTCTTGAGTTTGACAATCTTTACTTGGACATGAATGGGATTATTCATCCTTGTTTCCACCCCGAGGATAGGCCGAGTCCGACTACTTTTGATGAGGTGTTTCAGTGCATGTTTGAGTATATAGATAGGATTTTTGGGATGGTGCGGCCGAGAAAGGTACTGTACATGGCCATTGATGGTGTTGCCCCTAGGGCGAAGATGAATCAGCAGAGGTCGAGGAGGTTTAGGGCTGCGAAAGATGCGGCGGACGCGGCGGCTGAAGAAGAGAAGCTTCGTGAGGAGTTTGAAGCGGAGGGGAGGAAGCTTCCGCCAAAATTGCAGTCGCAAACTTTTGATTCCAATGTCATTACTCCTGGAACTCCTTTTATGGCTGTTTTATCAGTTGCATTGCAGTACTATATTCATCTTAGGTTAAATAATGATCCTGGATGGAAAAATGTTAAGGTTATCCTTTCTGATGCAAATGCTCCGGGTGAAGGGGAACACAAGATTATGTCATATATTCGTCTTCAACGAAACCTTCCTGGTTATGATCCAAATACGCGTCATTGCCTGTATGGTTTGGATGCTGATTTAATTATGCTGGCTTTGGCTACACATGAAGTTCATTTTTCAATTCTGCGAGAGGTTGTTTTCACTGCCCAGCAAGACAAATGCTTCCTTTGTGGTCAGATGGGTCATTTAGCGGCAGATTGTGAAGGAAAGGCAAAACGAAAGGATGGAGATCAGCTTGATGATGATCAGAAAGGTACTGGTGCTGAGGTTGTGGCCAAGAAGCCGTACCAGTTTCTCAACATTTGGACTCTTAGAGAATATTTAGACTATGAGATGCGGAATATTCCCAATTCCCCATTTGAGATTGATCTTGAGCGCATTGTGGATGATTTCATATTCATTTGTTTTTTCGTTGGAAACGATTTCCTGCCACATATGCCTACTCTGGAGATTCGTGAGGGTGCAATCAACTTGCTTATGGCTGTATACAAAAAGGAATTTCATGCACTGGGTGGATATTTGACTGATTCAAGCAAGCTGAATTTGAGTCGGGTGGAGCATTTCATTCAGGCAGTTGGTTGTTATGAAGACAAAATATTCCAGAAACGAGCTCAATTGCATCAGCGGCAGGCACAAAGAATAAAGCGTGCCAAGGTGCAAGTTCCCCAAGTTCAGCCAGATTCTTTAGTTGCAGTTAATCGATTTCAAGGTTCTCGTCTTGCTTCAGGTCCTTCTCCTGCACCCTATCAACAGTATTGTAGATCATCTGGTAGAGGAAATCCTGAAAAAGTTGCACGCTTTTCTTCAGAGGCATCAAGTATTGGTGCTGCTATTGTTGAAGCTGAGAACAGCAGTACTCTAGATGTTGAAGTACATGAAAATAAAGAAGATTTAAAAGCAAAGCTCAAAGAGATTCTTCGTGAGAAATCCGATGCTTTTAACTCTAGAAATCCCCAAGAAGAAGACAAGGTTAAATTGGGAGAACCTGGATGGAGGGATAGGTATTATGAAGAAAAGTTTTGTGCAAAAACTCAAGAAGAACGTGAAGCAGTTTGTAAAGATGTTATCTTGCGATACACAGAAGGCTTGTGTTGGGTGATGAACTATTATTATGAAGGGGTTTGTTCATGGGAGTGGTTTTACCCCTATCATTATGCACCCTTTGCTTCTGATCTCAAGGACCTAGGTCAGCTAAAGATAAGCTTCAATTTGGGCACTCCCTTTAAACCCTTCAATCAGCTGTTGGGGGTTTTCCCAGCTGCAAGCGCCCATGCCCTTCCTGAACAATACAGAAAGTTAATGACTGATCCAAACTCGCCTATTATTGACTTTTACCCTACTAACTTTGAAGTGGATATGAATGGGAAACGGTATGCATGGCAGGGTATTGCAAAATTGCCCTTCATTGACCAAGGTCGTCTTCTTTCTGAGGTTGAGAAAATTGAACACACATTGACAGAGGAGGAAACCCGGAGAAACTCCATGATGTTTGAGATGCTCTTTGTTTCATCTTCTCATCCTCTCTCTGTATGCATATACCTTCTTGACGATTGTTGTAGACAGTTGACGGACAAAGATCGAGTTGAGGTTAAGGAACAAATTGATCCCAAATACAGTGAAGGGATGAATGGTTATCTATCTTCATGTGCTGGAGAGTCTTGTCCTCCTGTTTTTCGGTCTCCTGTTAAATGCATGGAGGATATCATGGACAACCAAGTCATCTGCGCAATATATAGGCTACCAGAAGTACATAAGCATATAACTCGACCGCCTGCAGGTGTTATTTTCCCCAAGAAGACTGTGACGGTGGGGGATCTGAAGCCTGCACCTGTTTTATGGCATGAAGATTCTGGGCGGAACCCCCTTGGAACCACTTCGCAAAGACAGCTTGGGGATGCCGCACATCGACTGGTTGTTAATAGCTTACAGGTGAAGGTAGACAACATTAGCTATGGCAATCAAATGCAGGCCCTTCGACCACTATCTCATGCGGGGCCTCAATATTACCCACCACACCCTTCGTACAATGATCAGGGACTACTTGGAATGCCACTACCTAGAACATTTCAGCATCCTCAAGGTCAGCACAACCGAAATTCAAGTTTCACTAGTGATCGGCATTCATCATCAGCTGTGTATAACGCTCAGAATAGGTCTCCTTCTCAACATCATGCCAGGGGTTCTGGGCACGCTTACTATCAATCAGGAAGGCATCAGAATGGTGGGCTCATTTACCCTCAGATACCTATTACACAAGCTCCTTCAGGTTTGAGACCTGGTCCTTCTCAAGGTGTTTATAACAAGTATCAGAGTAACCAGCCATCTGGAGCACCTCGTTATCAAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N zf-CCHC

Protein Analysis

992

Amino Acids

112.84

Weight (kDa)

6.34

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 253	3.9e-102	XRN 5'-3' exonuclease N-terminus
XRN_M	PF17846	331 - 814	9.9e-167	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75660 AT5G42540 AT5G42540
fragaria_vesca	FvH4_2g38700 FvH4_2g38700 FvH4_5g21470
malus_domestica	MD00G1128500.v1.1 MD08G1014700.v1.1 MD15G1014000.v1.1
prunus_persica	Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1 Prupe.1G367600_v2.0.a1
pyrus_communis	pycom08g01310 pycom15g01210
rosa_chinensis	RchiOBHm_Chr5g0009961 RchiOBHm_Chr6g0302611
rosa_laevigata	RLG00000011157 RLG00000031714
rosa_multiflora	Rmu_sc0027322.1_g000001 Rmu_sc0027323.1_g000001 Rmu_sc0039467.1_g000001 Rmu_sc0039989.1_g000001 Rmu_sc0041627.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066230 Rroxscaffold_7G00165520
rosa_rugosa	Rorug04G0447300 Rorug06G0315300 Rorug06G0315400
rosa_samantha	Rh5AG078800 Rh5BG073500 Rh5CG086100 Rh5DG074200 Rh5DG336700 Rh6AG428700 Rh6BG473800 Rh6CG441000 Rh6DG427700
rosa_wichuraiana	Rw6G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2925
AarI	CACCTGC	1 cut(s)	2393
AasI	GACNNNNNNGTC	1 cut(s)	2342
Acc16I	TGCGCA	1 cut(s)	2353
Acc36I	ACCTGC	1 cut(s)	2393
AccI	GTMKAC	3 cut(s)	1113, 2185, 2565
AccII	CGCG	2 cut(s)	383, 676
AclWI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2448
AcoI	YGGCCR	3 cut(s)	278, 300, 900
AcsI	RAATTY	3 cut(s)	1124, 1168, 2722
AcuI	CTGAAG	5 cut(s)	411, 1335, 1416, 2465, 2874
AdeI	CACNNNGTG	1 cut(s)	1139
AfaI	GTAC	9 cut(s)	291, 296, 527, 883, 914, 1483, 1500, 2376, 2651
AfiI	CCNNNNNNNGG	5 cut(s)	196, 201, 608, 2402, 2915
AflIII	ACRYGT	1 cut(s)	674
AhlI	ACTAGT	1 cut(s)	2735
AjnI	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
AjuI	GAANNNNNNNTTGG	2 cut(s)	2031, 2063
Alw21I	GWGCWC	2 cut(s)	1240, 2959
Alw26I	GTCTC	3 cut(s)	2310, 2787, 2893
AlwI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2448
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	6 cut(s)	203, 278, 300, 900, 2595, 2621
ApeKI	GCWGC	3 cut(s)	362, 1454, 1886
ApoI	RAATTY	3 cut(s)	1124, 1168, 2722
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
Asp700I	GAANNNNTTC	1 cut(s)	2500
AspA2I	CCTAGG	2 cut(s)	320, 1810
AspLEI	GCGC	3 cut(s)	1005, 1895, 2354
AspS9I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
AsuC2I	CCSGG	2 cut(s)	603, 2098
AsuHPI	GGTGA	3 cut(s)	617, 1735, 2569
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	3 cut(s)	1355, 1807, 2906
AvrII	CCTAGG	2 cut(s)	320, 1810
BaeGI	GKGCMC	2 cut(s)	1844, 2817
BalI	TGGCCA	2 cut(s)	302, 902
BanII	GRGCYC	2 cut(s)	1240, 2856
BbsI	GAAGAC	5 cut(s)	632, 1221, 1596, 2039, 2429
Bbv12I	GWGCWC	2 cut(s)	1240, 2959
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	349, 1441, 1873
BccI	CCATC	8 cut(s)	18, 265, 302, 555, 799, 845, 1611, 2956
BceAI	ACGGC	1 cut(s)	895
BcgI	CGANNNNNNTGC	4 cut(s)	2372, 2406, 2582, 2616
BciT130I	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	2 cut(s)	871, 2656
BcnI	CCSGG	2 cut(s)	603, 2098
BcoDI	GTCTC	3 cut(s)	2310, 2787, 2893
BcuI	ACTAGT	1 cut(s)	2735
BfaI	CTAG	6 cut(s)	321, 1487, 1572, 1811, 2685, 2736
BfmI	CTRYAG	2 cut(s)	19, 2400
BfoI	RGCGCY	1 cut(s)	1896
BfuAI	ACCTGC	1 cut(s)	2393
BfuI	GTATCC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	323
BlnI	CCTAGG	2 cut(s)	320, 1810
BmcAI	AGTACT	2 cut(s)	527, 1483
Bme1390I	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
Bme18I	GGWCC	3 cut(s)	1355, 1807, 2906
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
BmiI	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
BmrFI	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
BmrI	ACTGGG	1 cut(s)	1145
BmuI	ACTGGG	1 cut(s)	1145
BoxI	GACNNNNGTC	2 cut(s)	1812, 2040
BpiI	GAAGAC	5 cut(s)	632, 1221, 1596, 2039, 2429
BpmI	CTGGAG	3 cut(s)	1094, 2298, 2973
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	6 cut(s)	158, 1019, 1644, 1787, 2688, 2898
BpuMI	CCSGG	2 cut(s)	603, 2098
Bsa29I	ATCGAT	1 cut(s)	1327
BsaBI	GATNNNNATC	2 cut(s)	855, 870
BsaI	GGTCTC	3 cut(s)	2310, 2787, 2893
BsaJI	CCNNGG	7 cut(s)	195, 320, 1278, 1810, 2038, 2491, 2802
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	2869, 2899
Bsc4I	CCNNNNNNNGG	5 cut(s)	196, 201, 608, 2402, 2915
Bse1I	ACTGG	4 cut(s)	889, 916, 1140, 2541
Bse3DI	GCAATG	2 cut(s)	518, 679
Bse8I	GATNNNNATC	2 cut(s)	855, 870
BseBI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
BseCI	ATCGAT	1 cut(s)	1327
BseDI	CCNNGG	7 cut(s)	195, 320, 1278, 1810, 2038, 2491, 2802
BseJI	GATNNNNATC	2 cut(s)	855, 870
BseLI	CCNNNNNNNGG	5 cut(s)	196, 201, 608, 2402, 2915
BseMI	GCAATG	2 cut(s)	518, 679
BseMII	CTCAG	5 cut(s)	882, 1461, 2046, 2786, 2879
BseNI	ACTGG	4 cut(s)	889, 916, 1140, 2541
BseRI	GAGGAG	4 cut(s)	83, 364, 425, 2102
BseSI	GKGCMC	2 cut(s)	1844, 2817
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	349, 1441, 1873
BseYI	CCCAGC	2 cut(s)	774, 1882
BsgI	GTGCAG	2 cut(s)	1350, 2436
Bsh1236I	CGCG	2 cut(s)	383, 676
Bsh1285I	CGRYCG	2 cut(s)	281, 2396
BshFI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
BshVI	ATCGAT	1 cut(s)	1327
BsiEI	CGRYCG	2 cut(s)	281, 2396
BsiHKAI	GWGCWC	2 cut(s)	1240, 2959
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	4 cut(s)	11, 104, 602, 2098
BslFI	GGGAC	1 cut(s)	2676
BslI	CCNNNNNNNGG	5 cut(s)	196, 201, 608, 2402, 2915
BsmAI	GTCTC	3 cut(s)	2310, 2787, 2893
BsmFI	GGGAC	1 cut(s)	2676
BsmI	GAATGC	2 cut(s)	2679, 2746
BsnI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
Bso31I	GGTCTC	3 cut(s)	2310, 2787, 2893
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	5 cut(s)	1240, 1844, 2817, 2856, 2959
Bsp1407I	TGTACA	1 cut(s)	294
BspANI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
BspCNI	CTCAG	5 cut(s)	883, 1462, 2047, 2785, 2878
BspDI	ATCGAT	1 cut(s)	1327
BspFNI	CGCG	2 cut(s)	383, 676
BspLI	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
BspMAI	CTGCAG	1 cut(s)	2404
BspMI	ACCTGC	1 cut(s)	2393
BspPI	GGATC	5 cut(s)	548, 659, 1928, 2225, 2448
BspTNI	GGTCTC	3 cut(s)	2310, 2787, 2893
BsrDI	GCAATG	2 cut(s)	518, 679
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	4 cut(s)	889, 916, 1140, 2541
BssECI	CCNNGG	7 cut(s)	195, 320, 1278, 1810, 2038, 2491, 2802
BssNAI	GTATAC	1 cut(s)	1114
BssT1I	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
Bst1107I	GTATAC	1 cut(s)	1114
Bst2UI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
Bst4CI	ACNGT	7 cut(s)	294, 1380, 1998, 2190, 2243, 2428, 2434
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	1790
BstAUI	TGTACA	1 cut(s)	294
BstDEI	CTNAG	7 cut(s)	539, 891, 938, 1470, 2055, 2772, 2865
BstENI	CCTNNNNNAGG	1 cut(s)	2913
BstFNI	CGCG	2 cut(s)	383, 676
BstH2I	RGCGCY	1 cut(s)	1896
BstHHI	GCGC	3 cut(s)	1005, 1895, 2354
BstMAI	GTCTC	3 cut(s)	2310, 2787, 2893
BstMCI	CGRYCG	2 cut(s)	281, 2396
BstNI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	2 cut(s)	1812, 2040
BstSCI	CCNGG	8 cut(s)	484, 556, 601, 655, 1612, 2096, 2801, 2902
BstSFI	CTRYAG	2 cut(s)	19, 2400
BstSLI	GKGCMC	2 cut(s)	1844, 2817
BstUI	CGCG	2 cut(s)	383, 676
BstV1I	GCAGC	3 cut(s)	349, 1441, 1873
BstV2I	GAAGAC	5 cut(s)	632, 1221, 1596, 2039, 2429
BstX2I	RGATCY	1 cut(s)	2440
BstXI	CCANNNNNNTGG	1 cut(s)	2951
BstYI	RGATCY	1 cut(s)	2440
BstZ17I	GTATAC	1 cut(s)	1114
BstZI	CGGCCG	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	1327
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
BsuTUI	ATCGAT	1 cut(s)	1327
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	4 cut(s)	242, 768, 1133, 2248
BveI	ACCTGC	1 cut(s)	2393
CfoI	GCGC	3 cut(s)	1005, 1895, 2354
Cfr13I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
ClaI	ATCGAT	1 cut(s)	1327
CseI	GACGC	2 cut(s)	389, 665
CsiI	ACCWGGT	1 cut(s)	2902
Csp6I	GTAC	9 cut(s)	290, 295, 526, 882, 913, 1482, 1499, 2375, 2650
CviQI	GTAC	9 cut(s)	290, 295, 526, 882, 913, 1482, 1499, 2375, 2650
DdeI	CTNAG	7 cut(s)	539, 891, 938, 1470, 2055, 2772, 2865
DraI	TTTAAA	2 cut(s)	1521, 1852
DraIII	CACNNNGTG	1 cut(s)	1139
DrdI	GACNNNNNNGTC	1 cut(s)	2342
DseDI	GACNNNNNNGTC	1 cut(s)	2342
EaeI	YGGCCR	3 cut(s)	278, 300, 900
EagI	CGGCCG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	3 cut(s)	392, 429, 2497
Ecl136II	GAGCTC	1 cut(s)	1238
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
Eco24I	GRGCYC	2 cut(s)	1240, 2856
Eco31I	GGTCTC	3 cut(s)	2310, 2787, 2893
Eco32I	GATATC	1 cut(s)	2329
Eco47I	GGWCC	3 cut(s)	1355, 1807, 2906
Eco52I	CGGCCG	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	1238
Eco57I	CTGAAG	5 cut(s)	411, 1335, 1416, 2465, 2874
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	1238
EcoNI	CCTNNNNNAGG	1 cut(s)	2913
EcoO109I	RGGNCCY	4 cut(s)	1355, 1807, 2596, 2621
EcoRII	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
EcoRV	GATATC	1 cut(s)	2329
EcoT14I	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
EcoT22I	ATGCAT	3 cut(s)	2005, 2162, 2321
EcoT38I	GRGCYC	2 cut(s)	1240, 2856
ErhI	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
FalI	AAGNNNNNCTT	8 cut(s)	387, 419, 1527, 1559, 1814, 1846, 2031, 2063
FaqI	GGGAC	1 cut(s)	2676
FauI	CCCGC	1 cut(s)	2611
FauNDI	CATATG	1 cut(s)	1062
FbaI	TGATCA	2 cut(s)	871, 2656
FblI	GTMKAC	3 cut(s)	1113, 2185, 2565
FriOI	GRGCYC	2 cut(s)	1240, 2856
FspBI	CTAG	6 cut(s)	321, 1487, 1572, 1811, 2685, 2736
FspI	TGCGCA	1 cut(s)	2353
GlaI	GCGC	3 cut(s)	1004, 1894, 2353
GsaI	CCCAGC	2 cut(s)	778, 1886
GsuI	CTGGAG	3 cut(s)	1094, 2298, 2973
HaeII	RGCGCY	1 cut(s)	1896
HaeIII	GGCC	6 cut(s)	205, 280, 302, 902, 2597, 2623
HapII	CCGG	4 cut(s)	11, 104, 602, 2098
HgaI	GACGC	2 cut(s)	389, 665
HhaI	GCGC	3 cut(s)	1005, 1895, 2354
Hin6I	GCGC	3 cut(s)	1003, 1893, 2352
HinP1I	GCGC	3 cut(s)	1003, 1893, 2352
HincII	GTYRAC	2 cut(s)	109, 2193
HindII	GTYRAC	2 cut(s)	109, 2193
HindIII	AAGCTT	3 cut(s)	401, 434, 1828
HpaII	CCGG	4 cut(s)	11, 104, 602, 2098
HphI	GGTGA	3 cut(s)	617, 1735, 2569
Hpy166II	GTNNAC	5 cut(s)	109, 1114, 2186, 2193, 2566
Hpy8I	GTNNAC	5 cut(s)	109, 1114, 2186, 2193, 2566
HpyCH4III	ACNGT	7 cut(s)	294, 1380, 1998, 2190, 2243, 2428, 2434
HpyCH4IV	ACGT	1 cut(s)	1669
HpyF3I	CTNAG	7 cut(s)	539, 891, 938, 1470, 2055, 2772, 2865
HpySE526I	ACGT	1 cut(s)	1669
HspAI	GCGC	3 cut(s)	1003, 1893, 2352
Ksp22I	TGATCA	2 cut(s)	871, 2656
LmnI	GCTCC	4 cut(s)	604, 1183, 2890, 2954
Lsp1109I	GCAGC	3 cut(s)	349, 1441, 1873
MabI	ACCWGGT	1 cut(s)	2902
MaeI	CTAG	6 cut(s)	321, 1487, 1572, 1811, 2685, 2736
MaeII	ACGT	1 cut(s)	1669
MaeIII	GTNAC	2 cut(s)	2428, 2939
MfeI	CAATTG	1 cut(s)	1241
MflI	RGATCY	1 cut(s)	2440
MhlI	GDGCHC	5 cut(s)	1240, 1844, 2817, 2856, 2959
MlsI	TGGCCA	2 cut(s)	302, 902
MluI	ACGCGT	1 cut(s)	674
MluNI	TGGCCA	2 cut(s)	302, 902
MlyI	GAGTC	4 cut(s)	217, 928, 1183, 2291
MmeI	TCCRAC	2 cut(s)	236, 1021
Mox20I	TGGCCA	2 cut(s)	302, 902
Mph1103I	ATGCAT	3 cut(s)	2005, 2162, 2321
MroXI	GAANNNNTTC	1 cut(s)	2500
MscI	TGGCCA	2 cut(s)	302, 902
MslI	CAYNNNNRTG	2 cut(s)	1759, 2844
Msp20I	TGGCCA	2 cut(s)	302, 902
MspA1I	CMGCKG	4 cut(s)	1252, 1867, 1886, 2759
MspI	CCGG	4 cut(s)	11, 104, 602, 2098
MspR9I	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
MunI	CAATTG	1 cut(s)	1241
Mva1269I	GAATGC	2 cut(s)	2679, 2746
MvaI	CCWGG	6 cut(s)	486, 558, 657, 1614, 2803, 2904
MvnI	CGCG	2 cut(s)	383, 676
NciI	CCSGG	2 cut(s)	603, 2098
NdeI	CATATG	1 cut(s)	1062
NlaIV	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
NmeAIII	GCCGAG	2 cut(s)	231, 306
NmuCI	GTSAC	1 cut(s)	2428
NsbI	TGCGCA	1 cut(s)	2353
NsiI	ATGCAT	3 cut(s)	2005, 2162, 2321
NspI	RCATGY	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	2393
PcsI	WCGNNNNNNNCGW	2 cut(s)	643, 1044
PctI	GAATGC	2 cut(s)	2679, 2746
PdmI	GAANNNNTTC	1 cut(s)	2500
PfeI	GAWTC	8 cut(s)	100, 334, 467, 1078, 1154, 1307, 1540, 2474
PflFI	GACNNNGTC	1 cut(s)	2904
PfoI	TCCNGGA	2 cut(s)	484, 556
PleI	GAGTC	4 cut(s)	216, 928, 1182, 2290
PpsI	GAGTC	4 cut(s)	216, 928, 1182, 2290
PpuMI	RGGWCCY	2 cut(s)	1355, 1807
PshAI	GACNNNNGTC	2 cut(s)	1812, 2040
PsiI	TTATAA	1 cut(s)	2925
Psp124BI	GAGCTC	1 cut(s)	1240
Psp5II	RGGWCCY	2 cut(s)	1355, 1807
Psp6I	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
PspFI	CCCAGC	2 cut(s)	774, 1882
PspGI	CCWGG	6 cut(s)	484, 556, 655, 1612, 2801, 2902
PspN4I	GGNNCC	5 cut(s)	9, 75, 2486, 2497, 2622
PspPI	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
PspPPI	RGGWCCY	2 cut(s)	1355, 1807
PstI	CTGCAG	1 cut(s)	2404
PsuI	RGATCY	1 cut(s)	2440
PsyI	GACNNNGTC	1 cut(s)	2904
PvuII	CAGCTG	3 cut(s)	1867, 1886, 2759
RsaI	GTAC	9 cut(s)	291, 296, 527, 883, 914, 1483, 1500, 2376, 2651
RsaNI	GTAC	9 cut(s)	290, 295, 526, 882, 913, 1482, 1499, 2375, 2650
RseI	CAYNNNNRTG	2 cut(s)	1759, 2844
SacI	GAGCTC	1 cut(s)	1240
Sau96I	GGNCC	5 cut(s)	1355, 1807, 2596, 2621, 2906
SbfI	CCTGCAGG	1 cut(s)	2404
ScaI	AGTACT	2 cut(s)	527, 1483
SchI	GAGTC	4 cut(s)	217, 928, 1183, 2291
ScrFI	CCNGG	8 cut(s)	486, 558, 603, 657, 1614, 2098, 2803, 2904
SdaI	CCTGCAGG	1 cut(s)	2404
SduI	GDGCHC	5 cut(s)	1240, 1844, 2817, 2856, 2959
SexAI	ACCWGGT	1 cut(s)	2902
SfcI	CTRYAG	2 cut(s)	19, 2400
SinI	GGWCC	3 cut(s)	1355, 1807, 2906
SmiMI	CAYNNNNRTG	2 cut(s)	1759, 2844
SmlI	CTYRAG	6 cut(s)	137, 998, 1659, 1802, 2703, 2913
SmoI	CTYRAG	6 cut(s)	137, 998, 1659, 1802, 2703, 2913
SpeI	ACTAGT	1 cut(s)	2735
Sse8387I	CCTGCAGG	1 cut(s)	2404
SspI	AATATT	4 cut(s)	947, 970, 1224, 2630
SspMI	CTAG	6 cut(s)	321, 1487, 1572, 1811, 2685, 2736
SstI	GAGCTC	1 cut(s)	1240
StyD4I	CCNGG	8 cut(s)	484, 556, 601, 655, 1612, 2096, 2801, 2902
StyI	CCWWGG	5 cut(s)	320, 1278, 1810, 2038, 2491
TaaI	ACNGT	7 cut(s)	294, 1380, 1998, 2190, 2243, 2428, 2434
TaiI	ACGT	1 cut(s)	1672
TaqI	TCGA	7 cut(s)	98, 347, 1327, 2206, 2392, 2533, 2602
TaqII	GACCGA	1 cut(s)	2292
TatI	WGTACW	5 cut(s)	294, 525, 1481, 1498, 2374
TauI	GCSGC	7 cut(s)	280, 377, 386, 389, 821, 1255, 2528
TfiI	GAWTC	8 cut(s)	100, 334, 467, 1078, 1154, 1307, 1540, 2474
TscAI	CASTG	4 cut(s)	242, 775, 1140, 2248
TseFI	GTSAC	1 cut(s)	2428
TseI	GCWGC	3 cut(s)	362, 1454, 1886
Tsp45I	GTSAC	1 cut(s)	2428
TspGWI	ACGGA	1 cut(s)	2210
TspRI	CASTG	4 cut(s)	242, 775, 1140, 2248
Tth111I	GACNNNGTC	1 cut(s)	2904
VpaK11BI	GGWCC	3 cut(s)	1355, 1807, 2906
XagI	CCTNNNNNAGG	1 cut(s)	2913
XapI	RAATTY	3 cut(s)	1124, 1168, 2722
XbaI	TCTAGA	2 cut(s)	1486, 1571
XceI	RCATGY	1 cut(s)	244
XmaJI	CCTAGG	2 cut(s)	320, 1810
XmiI	GTMKAC	3 cut(s)	1113, 2185, 2565
XmnI	GAANNNNTTC	1 cut(s)	2500
XspI	CTAG	6 cut(s)	321, 1487, 1572, 1811, 2685, 2736
ZrmI	AGTACT	2 cut(s)	527, 1483
Zsp2I	ATGCAT	3 cut(s)	2005, 2162, 2321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.