Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

60280350 .. 60285680

Gene Structure 5331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0447300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGGCTGCATCTTCTTCTTCGCTTTTCGGAATTAGAGAAGAAGATCAAAACTTGATGAAGCAACAGCAGCATTCCAGCTCCACACCAACATCATCCACAGCCGCCGCGCCTCTGGCACCACCACCGCAGAAGAAGAAGAGAAACCAACCTGGAACACCAAATCCAGAAGCGGAAGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAGAACCTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAACTAAAGCAGAAGACTACAAAAGAACCCAAACGCAAGGTCTACCTGTGCCCGGAGCCCACCTGCGTCCATCACGACCCGTCTAGGGCCCTCGGCGACCTCACCGGAATCAAGAAGCACTTCTCCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGCGCTACGCCGTTCAGTCTGATTGGAAGGCGCATTCTAAGACTTGCGGCACTCGGGAGTACCGATGCGACTGTGGTACTCTCTTCTCCAGGAGGGACAGTTTTATCACTCATAGGGCCTTCTGTGATGCACTGGCTCAGGAAAGTGCAAGACATCAACCTAATCTGAGCAGCCTTGGCAGCAACTTATATGGAGGTACCAGCAACACTGGCCTAGCCTTATCTCATCATCACCATCAACAACAAGTTGTGGGTCCTAACATTGATCATCATCACCACAACAATCAATCAACGGCTGCTGACATCTTACGACTCGGAGGCGGCAGCGGCAATGCCCGGACCGGACAGTTCGATCATCTCCTTTCTCCTCCTTCCATGGGGTCGTCTTTTGGTCCGGCGCAATCTTCGGCACCCTTCTTCATTAATCAAGACCAATCTAGCCAGCAATACCATCACGATCAAGAACAGTTGCAGAGCAAACAATTCCATGGACTGATGCAATTTTCTGATCATCAGAACAACAACTCTTCCTCAGGAGGCAATCTGTTTAACCTACCTTTCTTATCAAACAGCAACAACAGCAACAACGCCGGTGGCACCAATAGTACTAATCTACTGCTTCATCCTGATCACCAGTACAACAGTAATGGCGGTGAAGGCGGGTCGAGTCTCTTCTCAGGTCACATGATGGGTGGAGGCGGTGGTGATCACATGAGCTCCGGCAATGTCTCTTCGCTCTATAGTTCTCAAGTACAAAACAACCATCATGGTGCAGGTGCAGCCGTCTCGCACATGTCCGCCACAGCGCTGCTTCAGAAGGCGGCTCAAATGGGGTCAACTACTTCGAGCAACAATACTTCTGCCTCGCTCCTAAGAAGCTTTGGAAGCACTTCCTCGACTAAATCTGAACGCCCCGCCGCGGCGGCCTCCCTTGTTCCTGCCAATTTAGGCGGCATTTTTGGTGGTGGCAGTGAAAATGAGAACAACCTCCAAGACCTAATGAACTCTTTTGCTGCTGGAGGGAGCTCCTCTATTTTCGGAACCGGGTCTTTTGGCAGTGGATTTCATGACGTGGCAAGTAGGGACGAGCCCAAGTTGCCGGCGGTGAGCATAGGAGCCGGGTCTGATAGGTTAACTAGGGATTTTCTTGGTGTTGGTCAGATTGTTAGGAGTATGAGCGGTGGGCAACAACAAACTCAGATCGAGCATATGAGCTCCTTGGATTCAGAGAGCAATGCTGCGCCGTCAACCCAATCTTTTGGAGGAGGTGGGAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

581

Amino Acids

62.05

Weight (kDa)

9.0

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	110 - 144	1.4e-22	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	148 - 172	1.2e-14	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	175 - 212	2.9e-24	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	368, 1229
Acc36I	ACCTGC	3 cut(s)	297, 368, 1229
Acc65I	GGTACC	1 cut(s)	662
AccB1I	GGYRCC	4 cut(s)	115, 662, 874, 1061
AccBSI	CCGCTC	1 cut(s)	1644
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	2 cut(s)	107, 1385
AcsI	RAATTY	1 cut(s)	1738
AcuI	CTGAAG	1 cut(s)	1262
AfaI	GTAC	6 cut(s)	527, 544, 664, 1072, 1103, 1218
AfeI	AGCGCT	2 cut(s)	470, 1272
AfiI	CCNNNNNNNGG	4 cut(s)	349, 382, 842, 1384
AflIII	ACRYGT	1 cut(s)	1257
AjiI	CACGTC	1 cut(s)	1537
AjnI	CCWGG	2 cut(s)	148, 554
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	6 cut(s)	78, 268, 1182, 1344, 1491, 1680
AluI	AGCT	6 cut(s)	78, 268, 1182, 1344, 1491, 1680
Alw21I	GWGCWC	4 cut(s)	464, 1184, 1493, 1682
Alw26I	GTCTC	3 cut(s)	1139, 1198, 1255
Ama87I	CYCGRG	1 cut(s)	519
Aor51HI	AGCGCT	2 cut(s)	470, 1272
AoxI	GGCC	4 cut(s)	384, 582, 676, 1389
ApaI	GGGCCC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	1738
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AseI	ATTAAT	1 cut(s)	888
Asp700I	GAANNNNTTC	2 cut(s)	416, 1354
Asp718I	GGTACC	1 cut(s)	662
AspLEI	GCGC	6 cut(s)	109, 471, 499, 865, 1273, 1708
AspS9I	GGNCC	6 cut(s)	384, 385, 582, 719, 804, 857
AsuC2I	CCSGG	4 cut(s)	350, 802, 1510, 1585
AsuHPI	GGTGA	7 cut(s)	391, 689, 731, 1088, 1130, 1181, 1582
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	3 cut(s)	719, 804, 857
AxyI	CCTNAGG	1 cut(s)	997
BaeGI	GKGCMC	2 cut(s)	350, 388
BanI	GGYRCC	4 cut(s)	115, 662, 874, 1061
BanII	GRGCYC	6 cut(s)	357, 388, 1184, 1493, 1557, 1682
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	4 cut(s)	464, 1184, 1493, 1682
BbvI	GCAGC	9 cut(s)	79, 648, 657, 748, 801, 1256, 1260, 1465, 1690
BccI	CCATC	5 cut(s)	375, 708, 924, 1147, 1236
BceAI	ACGGC	5 cut(s)	448, 461, 774, 1232, 1693
BcgI	CGANNNNNNTGC	2 cut(s)	1233, 1267
BciT130I	CCWGG	2 cut(s)	150, 556
BclI	TGATCA	4 cut(s)	730, 973, 1093, 1171
BcnI	CCSGG	4 cut(s)	350, 802, 1510, 1585
BcoDI	GTCTC	3 cut(s)	1139, 1198, 1255
BfaI	CTAG	4 cut(s)	381, 680, 903, 1602
BfmI	CTRYAG	2 cut(s)	263, 1204
BfoI	RGCGCY	2 cut(s)	472, 1274
BfuAI	ACCTGC	3 cut(s)	297, 368, 1229
BglI	GCCNNNNNGGC	1 cut(s)	1388
BmcAI	AGTACT	1 cut(s)	1072
Bme1390I	CCNGG	6 cut(s)	150, 350, 556, 802, 1510, 1585
Bme18I	GGWCC	3 cut(s)	719, 804, 857
BmeT110I	CYCGRG	1 cut(s)	519
BmgBI	CACGTC	1 cut(s)	1537
BmgT120I	GGNCC	6 cut(s)	384, 385, 582, 719, 804, 857
BmrFI	CCNGG	6 cut(s)	150, 350, 556, 802, 1510, 1585
BmsI	GCATC	4 cut(s)	17, 521, 583, 951
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	3 cut(s)	406, 538, 1503
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	1197
BpuMI	CCSGG	4 cut(s)	350, 802, 1510, 1585
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	7 cut(s)	293, 388, 640, 840, 952, 1383, 1683
BsaWI	WCCGGW	2 cut(s)	401, 806
BsaXI	ACNNNNNCTCC	6 cut(s)	446, 476, 550, 580, 1166, 1196
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 382, 842, 1384
Bse118I	RCCGGY	2 cut(s)	1055, 1564
Bse1I	ACTGG	3 cut(s)	603, 679, 1099
Bse21I	CCTNAGG	1 cut(s)	997
Bse3DI	GCAATG	3 cut(s)	802, 1195, 1705
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	150, 556
BseDI	CCNNGG	7 cut(s)	293, 388, 640, 840, 952, 1383, 1683
BseGI	GGATG	2 cut(s)	92, 1087
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	4 cut(s)	349, 382, 842, 1384
BseMI	GCAATG	3 cut(s)	802, 1195, 1705
BseMII	CTCAG	5 cut(s)	617, 623, 1011, 1155, 1676
BseNI	ACTGG	3 cut(s)	603, 679, 1099
BseRI	GAGGAG	3 cut(s)	822, 1483, 1743
BseSI	GKGCMC	2 cut(s)	350, 388
BseXI	GCAGC	9 cut(s)	79, 648, 657, 748, 801, 1256, 1260, 1465, 1690
BsgI	GTGCAG	2 cut(s)	1257, 1263
Bsh1236I	CGCG	2 cut(s)	107, 1385
BshFI	GGCC	4 cut(s)	386, 584, 678, 1391
BshNI	GGYRCC	4 cut(s)	115, 662, 874, 1061
BsiHKAI	GWGCWC	4 cut(s)	464, 1184, 1493, 1682
BsiHKCI	CYCGRG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	575, 1562
BslI	CCNNNNNNNGG	4 cut(s)	349, 382, 842, 1384
BsmAI	GTCTC	3 cut(s)	1139, 1198, 1255
BsmBI	CGTCTC	1 cut(s)	1255
BsmFI	GGGAC	2 cut(s)	575, 1562
BsmI	GAATGC	2 cut(s)	70, 499
BsnI	GGCC	4 cut(s)	386, 584, 678, 1391
BsoBI	CYCGRG	1 cut(s)	519
Bsp120I	GGGCCC	1 cut(s)	384
Bsp1286I	GDGCHC	8 cut(s)	350, 357, 388, 464, 1184, 1493, 1557, 1682
Bsp143I	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
Bsp19I	CCATGG	2 cut(s)	840, 952
BspANI	GGCC	4 cut(s)	386, 584, 678, 1391
BspCNI	CTCAG	5 cut(s)	616, 624, 1010, 1154, 1675
BspFNI	CGCG	2 cut(s)	107, 1385
BspHI	TCATGA	1 cut(s)	1531
BspMI	ACCTGC	3 cut(s)	297, 368, 1229
BspT107I	GGYRCC	4 cut(s)	115, 662, 874, 1061
BsrBI	CCGCTC	1 cut(s)	1644
BsrDI	GCAATG	3 cut(s)	802, 1195, 1705
BsrFI	RCCGGY	2 cut(s)	1055, 1564
BsrI	ACTGG	3 cut(s)	603, 679, 1099
BssAI	RCCGGY	2 cut(s)	1055, 1564
BssECI	CCNNGG	7 cut(s)	293, 388, 640, 840, 952, 1383, 1683
BssMI	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
BssT1I	CCWWGG	5 cut(s)	293, 640, 840, 952, 1683
Bst2UI	CCWGG	2 cut(s)	150, 556
Bst4CI	ACNGT	5 cut(s)	539, 566, 813, 933, 1109
Bst6I	CTCTTC	6 cut(s)	131, 271, 554, 997, 1142, 1201
BstC8I	GCNNGC	2 cut(s)	908, 1566
BstDEI	CTNAG	7 cut(s)	504, 603, 632, 997, 1141, 1337, 1662
BstDSI	CCRYGG	3 cut(s)	840, 952, 1383
BstF5I	GGATG	2 cut(s)	92, 1087
BstFNI	CGCG	2 cut(s)	107, 1385
BstH2I	RGCGCY	2 cut(s)	472, 1274
BstHHI	GCGC	6 cut(s)	109, 471, 499, 865, 1273, 1708
BstKTI	GATC	8 cut(s)	46, 733, 820, 925, 976, 1096, 1174, 1668
BstMAI	GTCTC	3 cut(s)	1139, 1198, 1255
BstMBI	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
BstNI	CCWGG	2 cut(s)	150, 556
BstNSI	RCATGY	1 cut(s)	1261
BstSCI	CCNGG	6 cut(s)	148, 348, 554, 800, 1508, 1583
BstSFI	CTRYAG	2 cut(s)	263, 1204
BstSLI	GKGCMC	2 cut(s)	350, 388
BstUI	CGCG	2 cut(s)	107, 1385
BstV1I	GCAGC	9 cut(s)	79, 648, 657, 748, 801, 1256, 1260, 1465, 1690
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	1724
Bsu36I	CCTNAGG	1 cut(s)	997
BsuRI	GGCC	4 cut(s)	386, 584, 678, 1391
BtgI	CCRYGG	3 cut(s)	840, 952, 1383
BtrI	CACGTC	1 cut(s)	1537
BtsCI	GGATG	2 cut(s)	92, 1087
BtsI	GCAGTG	2 cut(s)	1441, 1528
BtsIMutI	CAGTG	4 cut(s)	596, 672, 1441, 1528
BveI	ACCTGC	3 cut(s)	297, 368, 1229
Cac8I	GCNNGC	2 cut(s)	908, 1566
CciI	TCATGA	1 cut(s)	1531
CfoI	GCGC	6 cut(s)	109, 471, 499, 865, 1273, 1708
Cfr10I	RCCGGY	2 cut(s)	1055, 1564
Cfr13I	GGNCC	6 cut(s)	384, 385, 582, 719, 804, 857
Cfr42I	CCGCGG	1 cut(s)	1386
CpoI	CGGWCCG	1 cut(s)	804
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	6 cut(s)	526, 543, 663, 1071, 1102, 1217
CspCI	CAANNNNNGTGG	2 cut(s)	1039, 1074
CspI	CGGWCCG	1 cut(s)	804
CviAII	CATG	7 cut(s)	841, 953, 1150, 1177, 1232, 1258, 1532
CviQI	GTAC	6 cut(s)	526, 543, 663, 1071, 1102, 1217
DdeI	CTNAG	7 cut(s)	504, 603, 632, 997, 1141, 1337, 1662
DpnI	GATC	8 cut(s)	45, 732, 819, 924, 975, 1095, 1173, 1667
DpnII	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
Eam1104I	CTCTTC	6 cut(s)	131, 271, 554, 997, 1142, 1201
EarI	CTCTTC	6 cut(s)	131, 271, 554, 997, 1142, 1201
EciI	GGCGGA	1 cut(s)	1252
Ecl136II	GAGCTC	3 cut(s)	1182, 1491, 1680
Eco130I	CCWWGG	5 cut(s)	293, 640, 840, 952, 1683
Eco24I	GRGCYC	6 cut(s)	357, 388, 1184, 1493, 1557, 1682
Eco47I	GGWCC	3 cut(s)	719, 804, 857
Eco47III	AGCGCT	2 cut(s)	470, 1272
Eco53kI	GAGCTC	3 cut(s)	1182, 1491, 1680
Eco57I	CTGAAG	1 cut(s)	1262
Eco81I	CCTNAGG	1 cut(s)	997
Eco88I	CYCGRG	1 cut(s)	519
EcoICRI	GAGCTC	3 cut(s)	1182, 1491, 1680
EcoO109I	RGGNCCY	4 cut(s)	384, 385, 582, 719
EcoRII	CCWGG	2 cut(s)	148, 554
EcoT14I	CCWWGG	5 cut(s)	293, 640, 840, 952, 1683
EcoT38I	GRGCYC	6 cut(s)	357, 388, 1184, 1493, 1557, 1682
ErhI	CCWWGG	5 cut(s)	293, 640, 840, 952, 1683
Esp3I	CGTCTC	1 cut(s)	1255
FaeI	CATG	7 cut(s)	844, 956, 1153, 1180, 1235, 1261, 1535
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	2 cut(s)	575, 1562
FatI	CATG	7 cut(s)	840, 952, 1149, 1176, 1231, 1257, 1531
FauI	CCCGC	2 cut(s)	1118, 1387
FauNDI	CATATG	2 cut(s)	221, 1674
FbaI	TGATCA	4 cut(s)	730, 973, 1093, 1171
FblI	GTMKAC	1 cut(s)	339
FokI	GGATG	2 cut(s)	79, 1074
FriOI	GRGCYC	6 cut(s)	357, 388, 1184, 1493, 1557, 1682
FspBI	CTAG	4 cut(s)	381, 680, 903, 1602
GlaI	GCGC	6 cut(s)	108, 470, 498, 864, 1272, 1707
GsuI	CTGGAG	3 cut(s)	406, 538, 1503
HaeII	RGCGCY	2 cut(s)	472, 1274
HaeIII	GGCC	4 cut(s)	386, 584, 678, 1391
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	6 cut(s)	109, 471, 499, 865, 1273, 1708
Hin1II	CATG	7 cut(s)	844, 956, 1153, 1180, 1235, 1261, 1535
Hin6I	GCGC	6 cut(s)	107, 469, 497, 863, 1271, 1706
HinP1I	GCGC	6 cut(s)	107, 469, 497, 863, 1271, 1706
HincII	GTYRAC	3 cut(s)	1302, 1599, 1713
HindII	GTYRAC	3 cut(s)	1302, 1599, 1713
HindIII	AAGCTT	1 cut(s)	1342
HinfI	GANTC	4 cut(s)	405, 777, 1132, 1688
HpaI	GTTAAC	1 cut(s)	1599
HphI	GGTGA	7 cut(s)	391, 689, 731, 1088, 1130, 1181, 1582
Hpy166II	GTNNAC	4 cut(s)	340, 1302, 1599, 1713
Hpy8I	GTNNAC	4 cut(s)	340, 1302, 1599, 1713
HpyAV	CCTTC	6 cut(s)	487, 595, 846, 889, 1115, 1276
HpyCH4III	ACNGT	5 cut(s)	539, 566, 813, 933, 1109
HpyCH4IV	ACGT	1 cut(s)	1536
HpyCH4V	TGCA	8 cut(s)	8, 234, 596, 614, 937, 964, 1238, 1244
HpyF3I	CTNAG	7 cut(s)	504, 603, 632, 997, 1141, 1337, 1662
HpySE526I	ACGT	1 cut(s)	1536
Hsp92II	CATG	7 cut(s)	844, 956, 1153, 1180, 1235, 1261, 1535
HspAI	GCGC	6 cut(s)	107, 469, 497, 863, 1271, 1706
KpnI	GGTACC	1 cut(s)	666
KroI	GCCGGC	1 cut(s)	1564
KroNI	GCCGGC	1 cut(s)	1566
Ksp22I	TGATCA	4 cut(s)	730, 973, 1093, 1171
KspAI	GTTAAC	1 cut(s)	1599
KspI	CCGCGG	1 cut(s)	1386
Kzo9I	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
Lsp1109I	GCAGC	9 cut(s)	79, 648, 657, 748, 801, 1256, 1260, 1465, 1690
LweI	GCATC	4 cut(s)	17, 521, 583, 951
MaeI	CTAG	4 cut(s)	381, 680, 903, 1602
MaeII	ACGT	1 cut(s)	1536
MaeIII	GTNAC	1 cut(s)	1145
MalI	GATC	8 cut(s)	45, 732, 819, 924, 975, 1095, 1173, 1667
MbiI	CCGCTC	1 cut(s)	1644
MboI	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
MhlI	GDGCHC	8 cut(s)	350, 357, 388, 464, 1184, 1493, 1557, 1682
MluCI	AATT	5 cut(s)	30, 947, 965, 1408, 1738
MlyI	GAGTC	2 cut(s)	771, 1141
MroNI	GCCGGC	1 cut(s)	1564
MroXI	GAANNNNTTC	2 cut(s)	416, 1354
MseI	TTAA	3 cut(s)	888, 1014, 1598
MslI	CAYNNNNRTG	1 cut(s)	1233
MspA1I	CMGCKG	2 cut(s)	792, 1385
MspR9I	CCNGG	6 cut(s)	150, 350, 556, 802, 1510, 1585
Mva1269I	GAATGC	2 cut(s)	70, 499
MvaI	CCWGG	2 cut(s)	150, 556
MvnI	CGCG	2 cut(s)	107, 1385
NaeI	GCCGGC	1 cut(s)	1566
NciI	CCSGG	4 cut(s)	350, 802, 1510, 1585
NcoI	CCATGG	2 cut(s)	840, 952
NdeI	CATATG	2 cut(s)	221, 1674
NdeII	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
NgoMIV	GCCGGC	1 cut(s)	1564
NlaIII	CATG	7 cut(s)	844, 956, 1153, 1180, 1235, 1261, 1535
NmeAIII	GCCGAG	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	1145
NspI	RCATGY	1 cut(s)	1261
PagI	TCATGA	1 cut(s)	1531
PaqCI	CACCTGC	2 cut(s)	368, 1229
PciI	ACATGT	1 cut(s)	1257
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PctI	GAATGC	2 cut(s)	70, 499
PdiI	GCCGGC	1 cut(s)	1566
PdmI	GAANNNNTTC	2 cut(s)	416, 1354
PfeI	GAWTC	2 cut(s)	405, 1688
PfoI	TCCNGGA	1 cut(s)	554
PleI	GAGTC	2 cut(s)	771, 1140
PpsI	GAGTC	2 cut(s)	771, 1140
PpuMI	RGGWCCY	1 cut(s)	719
PscI	ACATGT	1 cut(s)	1257
PshBI	ATTAAT	1 cut(s)	888
Psp124BI	GAGCTC	3 cut(s)	1184, 1493, 1682
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	2 cut(s)	148, 554
PspGI	CCWGG	2 cut(s)	148, 554
PspOMI	GGGCCC	1 cut(s)	384
PspPI	GGNCC	6 cut(s)	384, 385, 582, 719, 804, 857
PspPPI	RGGWCCY	1 cut(s)	719
RsaI	GTAC	6 cut(s)	527, 544, 664, 1072, 1103, 1218
RsaNI	GTAC	6 cut(s)	526, 543, 663, 1071, 1102, 1217
RseI	CAYNNNNRTG	1 cut(s)	1233
Rsr2I	CGGWCCG	1 cut(s)	804
RsrII	CGGWCCG	1 cut(s)	804
SacI	GAGCTC	3 cut(s)	1184, 1493, 1682
SacII	CCGCGG	1 cut(s)	1386
SaqAI	TTAA	3 cut(s)	888, 1014, 1598
Sau3AI	GATC	8 cut(s)	43, 730, 817, 922, 973, 1093, 1171, 1665
Sau96I	GGNCC	6 cut(s)	384, 385, 582, 719, 804, 857
ScaI	AGTACT	1 cut(s)	1072
SchI	GAGTC	2 cut(s)	771, 1141
ScrFI	CCNGG	6 cut(s)	150, 350, 556, 802, 1510, 1585
SduI	GDGCHC	8 cut(s)	350, 357, 388, 464, 1184, 1493, 1557, 1682
SfaNI	GCATC	4 cut(s)	17, 521, 583, 951
SfcI	CTRYAG	2 cut(s)	263, 1204
Sfr303I	CCGCGG	1 cut(s)	1386
SgrAI	CRCCGGYG	1 cut(s)	1055
SgrBI	CCGCGG	1 cut(s)	1386
SinI	GGWCC	3 cut(s)	719, 804, 857
SmiMI	CAYNNNNRTG	1 cut(s)	1233
SmlI	CTYRAG	1 cut(s)	1212
SmoI	CTYRAG	1 cut(s)	1212
Sse9I	AATT	5 cut(s)	30, 947, 965, 1408, 1738
SspMI	CTAG	4 cut(s)	381, 680, 903, 1602
SstI	GAGCTC	3 cut(s)	1184, 1493, 1682
StyD4I	CCNGG	6 cut(s)	148, 348, 554, 800, 1508, 1583
StyI	CCWWGG	5 cut(s)	293, 640, 840, 952, 1683
TaaI	ACNGT	5 cut(s)	539, 566, 813, 933, 1109
TaiI	ACGT	1 cut(s)	1539
TaqI	TCGA	5 cut(s)	816, 1130, 1310, 1361, 1668
TasI	AATT	5 cut(s)	30, 947, 965, 1408, 1738
TatI	WGTACW	3 cut(s)	1070, 1101, 1216
TfiI	GAWTC	2 cut(s)	405, 1688
Tru1I	TTAA	3 cut(s)	888, 1014, 1598
Tru9I	TTAA	3 cut(s)	888, 1014, 1598
TscAI	CASTG	4 cut(s)	603, 679, 1441, 1528
TseFI	GTSAC	1 cut(s)	1145
Tsp45I	GTSAC	1 cut(s)	1145
TspDTI	ATGAA	6 cut(s)	71, 208, 874, 1076, 1481, 1520
TspRI	CASTG	4 cut(s)	603, 679, 1441, 1528
VpaK11BI	GGWCC	3 cut(s)	719, 804, 857
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	1 cut(s)	1738
XceI	RCATGY	1 cut(s)	1261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	339
XmnI	GAANNNNTTC	2 cut(s)	416, 1354
XspI	CTAG	4 cut(s)	381, 680, 903, 1602
ZrmI	AGTACT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.