RchiOBHm_Chr5g0055541

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
58722458 .. 58723486
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33253

Sequence Viewer

Length: 1029 bp
ATGGAGACTTGGCAGGAAGCAGCTCTAGTAGCTGATGTGGGGAACCGAGCTCAAGTTCCGGTGATTTCATTTGCAGCACCTACTATAAACCCACCTCTAATACAACATGACTGGCCATTTTTGATACGAGTGGCAAGCGATCGTGCTGCTCAGATGAAATGCATCACAGATGTAGTGTCTTTGTACACTTGGAAAAGGGTTATTGTTATATACCAGGATGACGGTTATGGTGGTGATGCTGGGATGCTAGCTGTTTTATCTGAGGCTCTCCAAAACGTTGGCTCAAAGATTGAGCATCATTTGGTTCTCCCACGGGTTTCTTCCTTGTCTAATCCTAGTTGGGGTGAACTAGAAGAGATCTTGAAGCTTCCCACCTTTCAATCTCGGGTGTTCATTGTTCTCCAGTTGTCTTTCCCAGCAGTCACTAATCTATTCAGGGTGGCAAAAAAGATGGGACTTGTAGGAAGAGACTCAGCTTGGATAATCACAGAGAGTATTACAAGTTTGCTCGACTCTCAAGTCAATCATGATATGGTAGGTACTTTGGGAATCAAGTCCTACTATGCCAATAATACTAGTTCCTATGCTAAGTTTGTAGAGGTATTCCAAACAAGATTTCCAGAAGAAGATAATTCCAAGCCAGGAATTTATGCTCTTCGAGCATACGATCTTATTATGATCGTATCACAGGCCATAAGGAACACTACTAACAGTACTAACCTTCAGGTGTTGTTAAATACAGTATTGAACAATTATACGTGTTTAAGTGGCAAAATGCACTTCAAAAGAGGTGAAGTATTGTACACTCCAATATTCAGGATCATAAATATTGTGGAAGGGAACAGACACAAAGAATTGGACCTTTGGAGACCAGAGGTTGGGTTCTCACAGAGCCTTTCAAAAGAGACAAGCAAAAACAGAAGTGATGATGTTCGTACGGTAGTTTGGCCCGGCAACCTAACTGAACGAGCCCCTAAAGGCTGGGGGGCCCACTGCAAGAAAGCCCTTGAGAATTGTGGTTCCAGGTAG

Protein Analysis

342

Amino Acids

38.33

Weight (kDa)

8.57

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 6 - 265 1.1e-28 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 878
AclI AACGTT 1 cut(s) 276
AclWI GGATC 1 cut(s) 827
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 645
AcuI CTGAAG 1 cut(s) 707
AfaI GTAC 5 cut(s) 185, 541, 715, 803, 937
AfiI CCNNNNNNNGG 2 cut(s) 341, 878
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 5 cut(s) 364, 380, 748, 784, 900
AhlI ACTAGT 1 cut(s) 575
AjnI CCWGG 3 cut(s) 213, 640, 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AluBI AGCT 6 cut(s) 23, 32, 50, 251, 367, 476
AluI AGCT 6 cut(s) 23, 32, 50, 251, 367, 476
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 3 cut(s) 462, 862, 899
AlwI GGATC 1 cut(s) 827
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 4 cut(s) 113, 690, 947, 987
ApaI GGGCCC 1 cut(s) 991
ApeKI GCWGC 3 cut(s) 20, 74, 146
ApoI RAATTY 1 cut(s) 645
AspS9I GGNCC 4 cut(s) 859, 948, 987, 988
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 4 cut(s) 73, 245, 356, 803
AsuNHI GCTAGC 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 991
BalI TGGCCA 1 cut(s) 115
BanII GRGCYC 3 cut(s) 52, 973, 991
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 32, 86, 133
BccI CCATC 1 cut(s) 445
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 3 cut(s) 215, 642, 1024
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 3 cut(s) 462, 862, 899
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 5 cut(s) 26, 248, 336, 350, 576
BglII AGATCT 1 cut(s) 357
BisI GCNGC 3 cut(s) 21, 75, 147
BlsI GCNGC 3 cut(s) 22, 76, 148
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 4 cut(s) 215, 642, 951, 1024
Bme18I GGWCC 1 cut(s) 859
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 4 cut(s) 859, 948, 987, 988
BmiI GGNNCC 4 cut(s) 44, 988, 989, 1021
BmrFI CCNGG 4 cut(s) 215, 642, 951, 1024
BmsI GCATC 4 cut(s) 171, 226, 234, 304
BmtI GCTAGC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 386
BpuEI CTTGAG 3 cut(s) 36, 501, 1028
BpuMI CCSGG 1 cut(s) 951
BsaAI YACGTR 1 cut(s) 759
BsaI GGTCTC 1 cut(s) 862
BsaJI CCNNGG 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 878
Bse1I ACTGG 2 cut(s) 116, 403
BseBI CCWGG 3 cut(s) 215, 642, 1024
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 223, 249
BseLI CCNNNNNNNGG 2 cut(s) 341, 878
BseMII CTCAG 3 cut(s) 164, 252, 486
BseNI ACTGG 2 cut(s) 116, 403
BseSI GKGCMC 1 cut(s) 991
BseXI GCAGC 3 cut(s) 32, 86, 133
BseYI CCCAGC 3 cut(s) 239, 415, 981
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 4 cut(s) 115, 692, 949, 989
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 2 cut(s) 59, 951
BsiWI CGTACG 1 cut(s) 935
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 341, 878
BsmAI GTCTC 3 cut(s) 462, 862, 899
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 4 cut(s) 115, 692, 949, 989
Bso31I GGTCTC 1 cut(s) 862
BsoBI CYCGRG 1 cut(s) 384
Bsp120I GGGCCC 1 cut(s) 987
Bsp1286I GDGCHC 3 cut(s) 52, 973, 991
Bsp1407I TGTACA 2 cut(s) 183, 801
Bsp143I GATC 5 cut(s) 139, 357, 667, 678, 819
BspANI GGCC 4 cut(s) 115, 692, 949, 989
BspCNI CTCAG 3 cut(s) 163, 253, 485
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 4 cut(s) 44, 988, 989, 1021
BspOI GCTAGC 1 cut(s) 251
BspPI GGATC 1 cut(s) 827
BspQI GCTCTTC 1 cut(s) 660
BspTNI GGTCTC 1 cut(s) 862
BsrGI TGTACA 2 cut(s) 183, 801
BsrI ACTGG 2 cut(s) 116, 403
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 5 cut(s) 139, 357, 667, 678, 819
Bst2UI CCWGG 3 cut(s) 215, 642, 1024
Bst4CI ACNGT 4 cut(s) 224, 713, 742, 940
Bst6I CTCTTC 3 cut(s) 348, 460, 660
BstAUI TGTACA 2 cut(s) 183, 801
BstBAI YACGTR 1 cut(s) 759
BstC8I GCNNGC 2 cut(s) 136, 249
BstDEI CTNAG 4 cut(s) 150, 261, 472, 588
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 223, 249
BstKTI GATC 5 cut(s) 142, 360, 670, 681, 822
BstMAI GTCTC 3 cut(s) 462, 862, 899
BstMBI GATC 5 cut(s) 139, 357, 667, 678, 819
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 29, 659
BstNI CCWGG 3 cut(s) 215, 642, 1024
BstSCI CCNGG 4 cut(s) 213, 640, 949, 1022
BstSLI GKGCMC 1 cut(s) 991
BstV1I GCAGC 3 cut(s) 32, 86, 133
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 357
BsuRI GGCC 4 cut(s) 115, 692, 949, 989
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 223, 249
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 2 cut(s) 136, 249
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 4 cut(s) 859, 948, 987, 988
Csp6I GTAC 5 cut(s) 184, 540, 714, 802, 936
CviAII CATG 2 cut(s) 107, 527
CviQI GTAC 5 cut(s) 184, 540, 714, 802, 936
DdeI CTNAG 4 cut(s) 150, 261, 472, 588
DpnI GATC 5 cut(s) 141, 359, 669, 680, 821
DpnII GATC 5 cut(s) 139, 357, 667, 678, 819
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 3 cut(s) 348, 460, 660
EarI CTCTTC 3 cut(s) 348, 460, 660
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 3 cut(s) 52, 973, 991
Eco31I GGTCTC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 987
EcoRII CCWGG 3 cut(s) 213, 640, 1022
EcoT22I ATGCAT 1 cut(s) 164
EcoT38I GRGCYC 3 cut(s) 52, 973, 991
FaeI CATG 2 cut(s) 110, 530
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 106, 526
Fnu4HI GCNGC 3 cut(s) 21, 75, 147
FokI GGATG 2 cut(s) 230, 256
FriOI GRGCYC 3 cut(s) 52, 973, 991
Fsp4HI GCNGC 3 cut(s) 21, 75, 147
FspBI CTAG 5 cut(s) 26, 248, 336, 350, 576
GluI GCNGC 3 cut(s) 21, 75, 147
GsaI CCCAGC 3 cut(s) 243, 419, 985
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 4 cut(s) 115, 692, 949, 989
HapII CCGG 2 cut(s) 59, 951
Hin1II CATG 2 cut(s) 110, 530
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 3 cut(s) 470, 512, 549
HpaII CCGG 2 cut(s) 59, 951
HphI GGTGA 4 cut(s) 73, 245, 356, 803
Hpy166II GTNNAC 3 cut(s) 186, 347, 804
Hpy188I TCNGA 2 cut(s) 153, 262
Hpy188III TCNNGA 4 cut(s) 361, 527, 620, 817
Hpy8I GTNNAC 3 cut(s) 186, 347, 804
HpyAV CCTTC 2 cut(s) 731, 830
HpyCH4III ACNGT 4 cut(s) 224, 713, 742, 940
HpyCH4IV ACGT 2 cut(s) 276, 758
HpyCH4V TGCA 4 cut(s) 74, 162, 778, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 659
HpyF3I CTNAG 4 cut(s) 150, 261, 472, 588
HpySE526I ACGT 2 cut(s) 276, 758
Hsp92II CATG 2 cut(s) 110, 530
Kzo9I GATC 5 cut(s) 139, 357, 667, 678, 819
LguI GCTCTTC 1 cut(s) 660
Lsp1109I GCAGC 3 cut(s) 32, 86, 133
LweI GCATC 4 cut(s) 171, 226, 234, 304
MaeI CTAG 5 cut(s) 26, 248, 336, 350, 576
MaeII ACGT 2 cut(s) 276, 758
MaeIII GTNAC 1 cut(s) 421
MalI GATC 5 cut(s) 141, 359, 669, 680, 821
MboI GATC 5 cut(s) 139, 357, 667, 678, 819
MboII GAAGA 6 cut(s) 312, 365, 477, 635, 638, 647
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 3 cut(s) 52, 973, 991
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 5 cut(s) 631, 645, 751, 854, 1012
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 2 cut(s) 464, 506
MnlI CCTC 5 cut(s) 105, 256, 592, 782, 868
Mox20I TGGCCA 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 164
MscI TGGCCA 1 cut(s) 115
MseI TTAA 2 cut(s) 734, 764
Msp20I TGGCCA 1 cut(s) 115
MspI CCGG 2 cut(s) 59, 951
MspR9I CCNGG 4 cut(s) 215, 642, 951, 1024
MvaI CCWGG 3 cut(s) 215, 642, 1024
MwoI GCNNNNNNNGC 2 cut(s) 29, 659
NciI CCSGG 1 cut(s) 951
NdeII GATC 5 cut(s) 139, 357, 667, 678, 819
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 110, 530
NlaIV GGNNCC 4 cut(s) 44, 988, 989, 1021
NmuCI GTSAC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 164
PagI TCATGA 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 660
PfeI GAWTC 1 cut(s) 549
Pfl23II CGTACG 1 cut(s) 935
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 3 cut(s) 22, 76, 148
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 2 cut(s) 464, 506
PpsI GAGTC 2 cut(s) 464, 506
Ppu21I YACGTR 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 52
Psp1406I AACGTT 1 cut(s) 276
Psp6I CCWGG 3 cut(s) 213, 640, 1022
PspFI CCCAGC 3 cut(s) 239, 415, 981
PspGI CCWGG 3 cut(s) 213, 640, 1022
PspLI CGTACG 1 cut(s) 935
PspN4I GGNNCC 4 cut(s) 44, 988, 989, 1021
PspOMI GGGCCC 1 cut(s) 987
PspPI GGNCC 4 cut(s) 859, 948, 987, 988
PsuI RGATCY 1 cut(s) 357
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 5 cut(s) 185, 541, 715, 803, 937
RsaNI GTAC 5 cut(s) 184, 540, 714, 802, 936
SacI GAGCTC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 2 cut(s) 734, 764
SatI GCNGC 3 cut(s) 21, 75, 147
Sau3AI GATC 5 cut(s) 139, 357, 667, 678, 819
Sau96I GGNCC 4 cut(s) 859, 948, 987, 988
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 2 cut(s) 464, 506
ScrFI CCNGG 4 cut(s) 215, 642, 951, 1024
SduI GDGCHC 3 cut(s) 52, 973, 991
SfaNI GCATC 4 cut(s) 171, 226, 234, 304
SinI GGWCC 1 cut(s) 859
SmlI CTYRAG 3 cut(s) 51, 516, 1007
SmoI CTYRAG 3 cut(s) 51, 516, 1007
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 5 cut(s) 631, 645, 751, 854, 1012
SspI AATATT 2 cut(s) 813, 829
SspMI CTAG 5 cut(s) 26, 248, 336, 350, 576
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 4 cut(s) 213, 640, 949, 1022
TaaI ACNGT 4 cut(s) 224, 713, 742, 940
TaiI ACGT 2 cut(s) 279, 761
TaqI TCGA 2 cut(s) 510, 658
TasI AATT 5 cut(s) 631, 645, 751, 854, 1012
TatI WGTACW 3 cut(s) 183, 713, 801
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 2 cut(s) 734, 764
Tru9I TTAA 2 cut(s) 734, 764
TscAI CASTG 1 cut(s) 998
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 3 cut(s) 20, 74, 146
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 3 cut(s) 57, 170, 382
TspRI CASTG 1 cut(s) 998
Van91I CCANNNNNTGG 1 cut(s) 878
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 1 cut(s) 645
XspI CTAG 5 cut(s) 26, 248, 336, 350, 576
ZrmI AGTACT 1 cut(s) 715
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.