Rh5DG074300

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
6481010 .. 6483841
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG074300.1

Sequence Viewer

Length: 2367 bp
ATGGGCATGGAGACTTGGCAGGAAGCTGCTCTAGTGGCTGATGTGGGAAATCGAGCTCAAATTCCAGTGATTTCATTTGCGGCACCAACTATTACCACCCCTCTAATGCAACGCCGCTGGCCATTTTTGATACGAACGTCTAGCGATGGTGCTGCTCAAATGAAATGCATTGCAGACATGGTTTCTGCATACAACTGGAAAAGGGTTGTGGTGATATACGAAGATGATGGTTACGGTGGTGATGTCGGGACACTAGCTCTTTTATCCGAGGCTCTTCAAGATGTTGGTTCAAAGATTGAGCATCGTCTGGTTCTCCCTCAGGTTTCTTCTGAGTTTAATCCTAATTGGGTTGAACAAGAAGTGCTGTTGAAGCTTCCCACCTTTCAATCTCGGGTGTTCATTGTGCTTCAGTCATCTTTACCAGCTGTGATTAATCTATTCAGGGTGGCAAAGAAGATGGGACTTGTAGGAAGAGACTCGGCTTGGATAATCACAGAGAGAATTACTAGTCTGCTTGACACTCAAGTCAATCATGATATGGAAGGTATTTTGGGAATCAAGAGCTACTATGCCACTAATACTAGTTCCTATATCAAGTTCAACAAGGCATTCCAAAAAAAGTATCCAGAAAAAGATGACTCCAGGCCAGGAATTTATGCTCTTCGAGCATATGATCATACTAGAATTGTAATACAGGCCATAAGAATGAGCAGTAACAGTACTACTAACATTCAGGTTGTGTTAAGTACAGTGCTAAGAAATTATCAGGGTTTAAGTGGGAAAATGCACATTGAAGGAGGTGAAGTGTTGTTCTCTCCCATATTCAGGATCGTAAACATTGTGGAAGGGAACAGATACAAAGAGTTGAACTTTTGGAGACCAGAGGTTGGGTTCTCAGAAAGCCTTTCAAAAGAAACAAGCAAAAACAGAAGTGATGATGCTGGTGCAGTAGTTTGGCCAGGGAATCTAAGTCAACGAGCTCCTAAAGGCTGGGCAATGCCGACTGCTGATAAGCCAATAATAATTGGGGTTCCAGGTATTTCTACCAGTAGATTTGTAAGGGCTGAGGCAGGGCACTTTTACGGTTTCTGCATTGAAATTTTCCACAAGGTGCGAAGTCGTTTGAATTATACTCTGCATTATGAATTTCAGGCCTTTGATGGCTCGTATGATGATCTGGTAGATCAAGTCCATAACAAGACTTTTGATGCTGCTGTCGGTGATATCACAGCACTAGCAAACCGAGCGGACAAAGTGGAATTCACTCAGCCATATATGGAGTCTGGTTTGTCAATGATAGTTCCAGAAAAATCTGAACAAATAGCATGGCTGTTTACGAAACCTCTCACCTGGCAAATGTGGGCGGTGACATGTGCCATCTTAGTCTACACAATCTTGGTAGTATGGTTCCTGGAGCGCCTGTCCAATCCAGAATTTAATGGCACATTGTGGAATCAGATTGGCACAGCAACTTGGTTCACCTTCACCTCCTTGTTCTTTTCTCACAGAGAGAAAATCACAAACTACTTAACTCGAGTAGTAGTCATAGTTTGGCTGTTTGTTGTGTTGATCCTATCCTCAAGCTACACTGCTAATTTGTCATCAATGCTCACCATCCAACGATTGAGACCAAATGTAACAGACATTGAAATGCTAAAGAGAACCAACTCAAAAGTAGGCTTGGACGGGGATTCATCATTTATCACAAATTTCTTAGTGAATGTATTTCATTTCGACCGAAATAACATCATCAACATAAGCTGCCAATCCGAATACACTGAGGCATTCAAAAACAAAAGTATATCTGCTGCCTTTCTTGAATTCCCATATGCAAAAGCATTCATGAAACACTACTGCAATGGATATACTGCAAGCACACTCACCTTTAGATTTGGAGGACTATGCTTTATATTTCAGAAAGGCTCTCCAATTGCCGGGGATTTCACCATGGCCATTCTAGAGTTATTGGAGGATGGAGAAGTGAAGTCACTTGAGGATACTTGGTTGACACCGAATCCTGAGTGTCCAAACAATTCAACTTCCGGTGAACCAGAAAGCTTGAACGTCAAGAATTTTATGGGCCTTTATGTAATATCTGCTGCTACTTCCACCATTTGCTTTCTATCATCTCTCACTATCCAGTTGAAGAAGTTTCACCGAGACCAGGAAGCATACGGAGGCAATGCAAGTGATAAAAGTGTTTGGAACAGAACACTTAGAATGGCAAGATTTGTATGTAATAGAGAGCTCCATGTTCCAAGCAGAGCTCCAAGTTCTGTTGATGTGCCGGAATTGACTTCTTTCCAATGGGAGCCTGCGATCACTTCCACTTTTCCACCACTCAGAAGCATCATTTATCCACCCTAG

Protein Analysis

788

Amino Acids

88.92

Weight (kDa)

7.2

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 7 - 269 8.3e-29 Receptor family ligand binding region
Peripla_BP_6 PF13458 9 - 247 1.6e-11 Periplasmic binding protein
SBP_bac_3 PF00497 355 - 670 9.2e-15 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 357 - 436 1.2e-09 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 450 - 701 9.4e-31 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 887
AccBSI CCGCTC 1 cut(s) 1247
AccI GTMKAC 1 cut(s) 1386
AciI CCGC 4 cut(s) 80, 115, 1247, 1364
AclWI GGATC 2 cut(s) 836, 1564
AcoI YGGCCR 3 cut(s) 119, 956, 1950
AcsI RAATTY 9 cut(s) 60, 651, 1098, 1145, 1259, 1433, 1708, 1820, 2071
AcuI CTGAAG 1 cut(s) 392
AdeI CACNNNGTG 2 cut(s) 1111, 1449
AfaI GTAC 2 cut(s) 721, 748
AfiI CCNNNNNNNGG 4 cut(s) 825, 887, 1934, 2164
AflIII ACRYGT 1 cut(s) 1370
AhlI ACTAGT 2 cut(s) 506, 581
AjnI CCWGG 7 cut(s) 641, 646, 958, 1033, 1349, 1410, 2163
Alw21I GWGCWC 4 cut(s) 58, 982, 2250, 2269
Alw26I GTCTC 5 cut(s) 5, 468, 871, 1621, 2154
AlwI GGATC 2 cut(s) 836, 1564
Ama87I CYCGRG 2 cut(s) 390, 1533
AoxI GGCC 7 cut(s) 119, 644, 696, 956, 1152, 1950, 2080
ApeKI GCWGC 6 cut(s) 26, 152, 1211, 1761, 1808, 2099
ApoI RAATTY 9 cut(s) 60, 651, 1098, 1145, 1259, 1433, 1708, 1820, 2071
AseI ATTAAT 1 cut(s) 432
AspLEI GCGC 1 cut(s) 1419
AspS9I GGNCC 1 cut(s) 2080
AsuC2I CCSGG 1 cut(s) 1936
AvaI CYCGRG 2 cut(s) 390, 1533
AxyI CCTNAGG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 1077
BaeI ACNNNNGTAYC 2 cut(s) 122, 155
BalI TGGCCA 3 cut(s) 121, 958, 1952
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 4 cut(s) 58, 982, 2250, 2269
Bbv12I GWGCWC 4 cut(s) 58, 982, 2250, 2269
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 6 cut(s) 13, 139, 1198, 1748, 1795, 2086
BccI CCATC 7 cut(s) 140, 221, 451, 1154, 1385, 1622, 1967
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 7 cut(s) 643, 648, 960, 1035, 1351, 1412, 2165
BciVI GTATCC 2 cut(s) 633, 1990
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 1936
BcoDI GTCTC 5 cut(s) 5, 468, 871, 1621, 2154
BcuI ACTAGT 2 cut(s) 506, 581
BfaI CTAG 9 cut(s) 32, 141, 254, 507, 582, 681, 1235, 1958, 2365
BfoI RGCGCY 1 cut(s) 1420
BfuI GTATCC 2 cut(s) 633, 1990
BisI GCNGC 8 cut(s) 27, 81, 115, 153, 1212, 1762, 1809, 2100
BlsI GCNGC 8 cut(s) 28, 82, 116, 154, 1213, 1763, 1810, 2101
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 8 cut(s) 643, 648, 960, 1035, 1351, 1412, 1936, 2165
BmeT110I CYCGRG 2 cut(s) 390, 1533
BmgT120I GGNCC 1 cut(s) 2080
BmiI GGNNCC 4 cut(s) 84, 1032, 1409, 2313
BmrFI CCNGG 8 cut(s) 643, 648, 960, 1035, 1351, 1412, 1936, 2165
BmsI GCATC 4 cut(s) 310, 928, 1198, 2358
BpmI CTGGAG 2 cut(s) 625, 1433
Bpu10I CCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 3 cut(s) 507, 1564, 2012
BpuMI CCSGG 1 cut(s) 1936
BsaI GGTCTC 3 cut(s) 871, 1621, 2154
BsaJI CCNNGG 4 cut(s) 267, 959, 1935, 1947
BsaWI WCCGGW 1 cut(s) 2042
BsaXI ACNNNNNCTCC 4 cut(s) 789, 819, 1406, 1436
Bsc4I CCNNNNNNNGG 4 cut(s) 825, 887, 1934, 2164
Bse1I ACTGG 4 cut(s) 65, 200, 1047, 2140
Bse21I CCTNAGG 1 cut(s) 318
Bse3DI GCAATG 4 cut(s) 168, 1002, 1864, 2188
BseBI CCWGG 7 cut(s) 643, 648, 960, 1035, 1351, 1412, 2165
BseDI CCNNGG 4 cut(s) 267, 959, 1935, 1947
BseGI GGATG 2 cut(s) 1614, 1978
BseLI CCNNNNNNNGG 4 cut(s) 825, 887, 1934, 2164
BseMI GCAATG 4 cut(s) 168, 1002, 1864, 2188
BseMII CTCAG 8 cut(s) 321, 332, 909, 1056, 1280, 1770, 2010, 2356
BseNI ACTGG 4 cut(s) 65, 200, 1047, 2140
BseSI GKGCMC 1 cut(s) 1077
BseXI GCAGC 6 cut(s) 13, 139, 1198, 1748, 1795, 2086
BseYI CCCAGC 1 cut(s) 990
BsgI GTGCAG 1 cut(s) 966
Bsh1285I CGRYCG 1 cut(s) 1738
BshFI GGCC 7 cut(s) 121, 646, 698, 958, 1154, 1952, 2082
BshNI GGYRCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 1738
BsiHKAI GWGCWC 4 cut(s) 58, 982, 2250, 2269
BsiHKCI CYCGRG 2 cut(s) 390, 1533
BsiSI CCGG 3 cut(s) 1935, 2043, 2288
BslFI GGGAC 2 cut(s) 262, 474
BslI CCNNNNNNNGG 4 cut(s) 825, 887, 1934, 2164
BsmAI GTCTC 5 cut(s) 5, 468, 871, 1621, 2154
BsmFI GGGAC 2 cut(s) 262, 474
BsmI GAATGC 3 cut(s) 608, 1784, 1838
BsnI GGCC 7 cut(s) 121, 646, 698, 958, 1154, 1952, 2082
Bso31I GGTCTC 3 cut(s) 871, 1621, 2154
BsoBI CYCGRG 2 cut(s) 390, 1533
Bsp1286I GDGCHC 5 cut(s) 58, 982, 1077, 2250, 2269
Bsp143I GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
Bsp19I CCATGG 1 cut(s) 1947
BspACI CCGC 4 cut(s) 80, 115, 1247, 1364
BspANI GGCC 7 cut(s) 121, 646, 698, 958, 1154, 1952, 2082
BspCNI CTCAG 8 cut(s) 322, 331, 908, 1057, 1279, 1771, 2011, 2355
BspHI TCATGA 2 cut(s) 532, 1842
BspLI GGNNCC 4 cut(s) 84, 1032, 1409, 2313
BspPI GGATC 2 cut(s) 836, 1564
BspQI GCTCTTC 2 cut(s) 279, 666
BspT107I GGYRCC 1 cut(s) 82
BspTNI GGTCTC 3 cut(s) 871, 1621, 2154
BsrBI CCGCTC 1 cut(s) 1247
BsrDI GCAATG 4 cut(s) 168, 1002, 1864, 2188
BsrI ACTGG 4 cut(s) 65, 200, 1047, 2140
BssECI CCNNGG 4 cut(s) 267, 959, 1935, 1947
BssMI GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
BssT1I CCWWGG 1 cut(s) 1947
Bst2UI CCWGG 7 cut(s) 643, 648, 960, 1035, 1351, 1412, 2165
Bst4CI ACNGT 4 cut(s) 236, 719, 751, 1085
Bst6I CTCTTC 3 cut(s) 279, 466, 666
BstC8I GCNNGC 3 cut(s) 119, 1873, 2316
BstDSI CCRYGG 1 cut(s) 1947
BstF5I GGATG 2 cut(s) 1614, 1978
BstH2I RGCGCY 1 cut(s) 1420
BstHHI GCGC 1 cut(s) 1419
BstKTI GATC 6 cut(s) 676, 831, 1177, 1186, 1572, 2322
BstMAI GTCTC 5 cut(s) 5, 468, 871, 1621, 2154
BstMBI GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
BstMCI CGRYCG 1 cut(s) 1738
BstMWI GCNNNNNNNGC 4 cut(s) 35, 370, 665, 1244
BstNI CCWGG 7 cut(s) 643, 648, 960, 1035, 1351, 1412, 2165
BstNSI RCATGY 1 cut(s) 1374
BstSCI CCNGG 8 cut(s) 641, 646, 958, 1033, 1349, 1410, 1934, 2163
BstSLI GKGCMC 1 cut(s) 1077
BstV1I GCAGC 6 cut(s) 13, 139, 1198, 1748, 1795, 2086
Bsu36I CCTNAGG 1 cut(s) 318
BsuI GTATCC 2 cut(s) 633, 1990
BsuRI GGCC 7 cut(s) 121, 646, 698, 958, 1154, 1952, 2082
BtgI CCRYGG 1 cut(s) 1947
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 1614, 1978
BtsI GCAGTG 1 cut(s) 1587
BtsIMutI CAGTG 4 cut(s) 72, 756, 1587, 1776
Cac8I GCNNGC 3 cut(s) 119, 1873, 2316
CciI TCATGA 2 cut(s) 532, 1842
CfoI GCGC 1 cut(s) 1419
Cfr13I GGNCC 1 cut(s) 2080
Csp6I GTAC 2 cut(s) 720, 747
CviAII CATG 8 cut(s) 7, 178, 533, 1326, 1371, 1843, 1948, 2252
CviQI GTAC 2 cut(s) 720, 747
DpnI GATC 6 cut(s) 675, 830, 1176, 1185, 1571, 2321
DpnII GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
DraIII CACNNNGTG 2 cut(s) 1111, 1449
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
EaeI YGGCCR 3 cut(s) 119, 956, 1950
Eam1104I CTCTTC 3 cut(s) 279, 466, 666
EarI CTCTTC 3 cut(s) 279, 466, 666
Ecl136II GAGCTC 4 cut(s) 56, 980, 2248, 2267
Eco130I CCWWGG 1 cut(s) 1947
Eco147I AGGCCT 1 cut(s) 1154
Eco24I GRGCYC 4 cut(s) 58, 982, 2250, 2269
Eco31I GGTCTC 3 cut(s) 871, 1621, 2154
Eco32I GATATC 1 cut(s) 1225
Eco53kI GAGCTC 4 cut(s) 56, 980, 2248, 2267
Eco57I CTGAAG 1 cut(s) 392
Eco81I CCTNAGG 1 cut(s) 318
Eco88I CYCGRG 2 cut(s) 390, 1533
EcoICRI GAGCTC 4 cut(s) 56, 980, 2248, 2267
EcoRI GAATTC 2 cut(s) 1259, 1820
EcoRII CCWGG 7 cut(s) 641, 646, 958, 1033, 1349, 1410, 2163
EcoRV GATATC 1 cut(s) 1225
EcoT14I CCWWGG 1 cut(s) 1947
EcoT22I ATGCAT 1 cut(s) 170
EcoT38I GRGCYC 4 cut(s) 58, 982, 2250, 2269
ErhI CCWWGG 1 cut(s) 1947
FaeI CATG 8 cut(s) 10, 181, 536, 1329, 1374, 1846, 1951, 2255
FaqI GGGAC 2 cut(s) 262, 474
FatI CATG 8 cut(s) 6, 177, 532, 1325, 1370, 1842, 1947, 2251
FauNDI CATATG 2 cut(s) 670, 1828
FbaI TGATCA 1 cut(s) 673
FblI GTMKAC 1 cut(s) 1386
Fnu4HI GCNGC 8 cut(s) 27, 81, 115, 153, 1212, 1762, 1809, 2100
FokI GGATG 2 cut(s) 1601, 1985
FriOI GRGCYC 4 cut(s) 58, 982, 2250, 2269
Fsp4HI GCNGC 8 cut(s) 27, 81, 115, 153, 1212, 1762, 1809, 2100
FspBI CTAG 9 cut(s) 32, 141, 254, 507, 582, 681, 1235, 1958, 2365
GlaI GCGC 1 cut(s) 1418
GluI GCNGC 8 cut(s) 27, 81, 115, 153, 1212, 1762, 1809, 2100
GsaI CCCAGC 1 cut(s) 994
GsuI CTGGAG 2 cut(s) 625, 1433
HaeII RGCGCY 1 cut(s) 1420
HaeIII GGCC 7 cut(s) 121, 646, 698, 958, 1154, 1952, 2082
HapII CCGG 3 cut(s) 1935, 2043, 2288
HhaI GCGC 1 cut(s) 1419
Hin1II CATG 8 cut(s) 10, 181, 536, 1329, 1374, 1846, 1951, 2255
Hin6I GCGC 1 cut(s) 1417
HinP1I GCGC 1 cut(s) 1417
HincII GTYRAC 2 cut(s) 974, 2007
HindII GTYRAC 2 cut(s) 974, 2007
HindIII AAGCTT 2 cut(s) 371, 2056
HinfI GANTC 8 cut(s) 476, 555, 638, 964, 1280, 1453, 1691, 2014
HpaII CCGG 3 cut(s) 1935, 2043, 2288
Hpy166II GTNNAC 7 cut(s) 835, 974, 1335, 1387, 1479, 2007, 2048
Hpy188I TCNGA 8 cut(s) 268, 331, 898, 1315, 1458, 1771, 1917, 2345
Hpy8I GTNNAC 7 cut(s) 835, 974, 1335, 1387, 1479, 2007, 2048
HpyAV CCTTC 4 cut(s) 536, 788, 839, 1492
HpyCH4III ACNGT 4 cut(s) 236, 719, 751, 1085
HpyCH4IV ACGT 2 cut(s) 137, 2064
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 370, 665, 1244
HpySE526I ACGT 2 cut(s) 137, 2064
Hsp92II CATG 8 cut(s) 10, 181, 536, 1329, 1374, 1846, 1951, 2255
HspAI GCGC 1 cut(s) 1417
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
LguI GCTCTTC 2 cut(s) 279, 666
LmnI GCTCC 5 cut(s) 985, 1414, 2253, 2272, 2311
Lsp1109I GCAGC 6 cut(s) 13, 139, 1198, 1748, 1795, 2086
LweI GCATC 4 cut(s) 310, 928, 1198, 2358
MaeI CTAG 9 cut(s) 32, 141, 254, 507, 582, 681, 1235, 1958, 2365
MaeII ACGT 2 cut(s) 137, 2064
MaeIII GTNAC 5 cut(s) 230, 713, 1366, 1636, 1986
MalI GATC 6 cut(s) 675, 830, 1176, 1185, 1571, 2321
MbiI CCGCTC 1 cut(s) 1247
MboI GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
MboII GAAGA 7 cut(s) 233, 266, 318, 466, 483, 653, 2158
MfeI CAATTG 1 cut(s) 1929
MhlI GDGCHC 5 cut(s) 58, 982, 1077, 2250, 2269
MlsI TGGCCA 3 cut(s) 121, 958, 1952
MluNI TGGCCA 3 cut(s) 121, 958, 1952
MlyI GAGTC 3 cut(s) 470, 632, 1289
MmeI TCCRAC 1 cut(s) 1642
Mox20I TGGCCA 3 cut(s) 121, 958, 1952
Mph1103I ATGCAT 1 cut(s) 170
MscI TGGCCA 3 cut(s) 121, 958, 1952
MseI TTAA 6 cut(s) 336, 432, 743, 773, 1437, 1529
MslI CAYNNNNRTG 2 cut(s) 704, 1649
Msp20I TGGCCA 3 cut(s) 121, 958, 1952
MspA1I CMGCKG 2 cut(s) 117, 425
MspI CCGG 3 cut(s) 1935, 2043, 2288
MspR9I CCNGG 8 cut(s) 643, 648, 960, 1035, 1351, 1412, 1936, 2165
MunI CAATTG 1 cut(s) 1929
Mva1269I GAATGC 3 cut(s) 608, 1784, 1838
MvaI CCWGG 7 cut(s) 643, 648, 960, 1035, 1351, 1412, 2165
MwoI GCNNNNNNNGC 4 cut(s) 35, 370, 665, 1244
NciI CCSGG 1 cut(s) 1936
NcoI CCATGG 1 cut(s) 1947
NdeI CATATG 2 cut(s) 670, 1828
NdeII GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
NlaIII CATG 8 cut(s) 10, 181, 536, 1329, 1374, 1846, 1951, 2255
NlaIV GGNNCC 4 cut(s) 84, 1032, 1409, 2313
NmeAIII GCCGAG 1 cut(s) 458
NmuCI GTSAC 2 cut(s) 1366, 1986
NsiI ATGCAT 1 cut(s) 170
NspI RCATGY 1 cut(s) 1374
PaeR7I CTCGAG 1 cut(s) 1533
PagI TCATGA 2 cut(s) 532, 1842
PceI AGGCCT 1 cut(s) 1154
PciI ACATGT 1 cut(s) 1370
PciSI GCTCTTC 2 cut(s) 279, 666
PctI GAATGC 3 cut(s) 608, 1784, 1838
PfeI GAWTC 5 cut(s) 555, 964, 1453, 1691, 2014
PflMI CCANNNNNTGG 1 cut(s) 887
PfoI TCCNGGA 1 cut(s) 1410
PkrI GCNGC 8 cut(s) 28, 82, 116, 154, 1213, 1763, 1810, 2101
PleI GAGTC 3 cut(s) 470, 632, 1288
PpsI GAGTC 3 cut(s) 470, 632, 1288
PscI ACATGT 1 cut(s) 1370
PshBI ATTAAT 1 cut(s) 432
Psp124BI GAGCTC 4 cut(s) 58, 982, 2250, 2269
Psp6I CCWGG 7 cut(s) 641, 646, 958, 1033, 1349, 1410, 2163
PspFI CCCAGC 1 cut(s) 990
PspGI CCWGG 7 cut(s) 641, 646, 958, 1033, 1349, 1410, 2163
PspN4I GGNNCC 4 cut(s) 84, 1032, 1409, 2313
PspPI GGNCC 1 cut(s) 2080
PspXI VCTCGAGB 1 cut(s) 1533
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 721, 748
RsaNI GTAC 2 cut(s) 720, 747
RseI CAYNNNNRTG 2 cut(s) 704, 1649
SacI GAGCTC 4 cut(s) 58, 982, 2250, 2269
SapI GCTCTTC 2 cut(s) 279, 666
SaqAI TTAA 6 cut(s) 336, 432, 743, 773, 1437, 1529
SatI GCNGC 8 cut(s) 27, 81, 115, 153, 1212, 1762, 1809, 2100
Sau3AI GATC 6 cut(s) 673, 828, 1174, 1183, 1569, 2319
Sau96I GGNCC 1 cut(s) 2080
ScaI AGTACT 1 cut(s) 721
SchI GAGTC 3 cut(s) 470, 632, 1289
ScrFI CCNGG 8 cut(s) 643, 648, 960, 1035, 1351, 1412, 1936, 2165
SduI GDGCHC 5 cut(s) 58, 982, 1077, 2250, 2269
SfaNI GCATC 4 cut(s) 310, 928, 1198, 2358
Sfr274I CTCGAG 1 cut(s) 1533
SlaI CTCGAG 1 cut(s) 1533
SmiMI CAYNNNNRTG 2 cut(s) 704, 1649
SmlI CTYRAG 4 cut(s) 522, 1533, 1579, 1991
SmoI CTYRAG 4 cut(s) 522, 1533, 1579, 1991
SpeI ACTAGT 2 cut(s) 506, 581
SseBI AGGCCT 1 cut(s) 1154
SsiI CCGC 4 cut(s) 80, 115, 1247, 1364
SspMI CTAG 9 cut(s) 32, 141, 254, 507, 582, 681, 1235, 1958, 2365
SstI GAGCTC 4 cut(s) 58, 982, 2250, 2269
StuI AGGCCT 1 cut(s) 1154
StyD4I CCNGG 8 cut(s) 641, 646, 958, 1033, 1349, 1410, 1934, 2163
StyI CCWWGG 1 cut(s) 1947
TaaI ACNGT 4 cut(s) 236, 719, 751, 1085
TaiI ACGT 2 cut(s) 140, 2067
TaqI TCGA 4 cut(s) 52, 664, 1534, 1734
TaqII GACCGA 1 cut(s) 1752
TatI WGTACW 2 cut(s) 719, 746
TauI GCSGC 2 cut(s) 83, 117
TfiI GAWTC 5 cut(s) 555, 964, 1453, 1691, 2014
Tru1I TTAA 6 cut(s) 336, 432, 743, 773, 1437, 1529
Tru9I TTAA 6 cut(s) 336, 432, 743, 773, 1437, 1529
TscAI CASTG 4 cut(s) 72, 756, 1594, 1783
TseFI GTSAC 2 cut(s) 1366, 1986
TseI GCWGC 6 cut(s) 26, 152, 1211, 1761, 1808, 2099
Tsp45I GTSAC 2 cut(s) 1366, 1986
TspDTI ATGAA 8 cut(s) 63, 176, 388, 1158, 1683, 1718, 1831, 1859
TspGWI ACGGA 1 cut(s) 2190
TspRI CASTG 4 cut(s) 72, 756, 1594, 1783
Van91I CCANNNNNTGG 1 cut(s) 887
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 9 cut(s) 60, 651, 1098, 1145, 1259, 1433, 1708, 1820, 2071
XbaI TCTAGA 1 cut(s) 1957
XceI RCATGY 1 cut(s) 1374
XhoI CTCGAG 1 cut(s) 1533
XmiI GTMKAC 1 cut(s) 1386
XspI CTAG 9 cut(s) 32, 141, 254, 507, 582, 681, 1235, 1958, 2365
ZrmI AGTACT 1 cut(s) 721
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.