Rroxscaffold_3G00234120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000350
Physical Location & Seq
Forward (+)
20435707 .. 20438991
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234120.1

Sequence Viewer

Length: 162 bp
ATGGTAGCGATCGCGAAGAAATGCTATGCAGTCCTACTAGGCATGGAAAAATGTTTGCCTCCAAAACCGACTTTTGATGCTGTTGTTGGTGATTTCACCGTACTAGCAGACCGGGACAAAGTGGAATCACTCAGCCATTTGTCAAGTCTGGTTCGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.79

Weight (kDa)

7.8

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AfaI GTAC 1 cut(s) 102
AsiSI GCGATCGC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 88, 101
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 38, 104
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 9
Bsp68I TCGCGA 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 1 cut(s) 14
BssMI GATC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 14
BtuMI TCGCGA 1 cut(s) 14
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 43
CviJI RGCY 1 cut(s) 135
CviKI_1 RGCY 1 cut(s) 135
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 27, 44
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 42
FspBI CTAG 2 cut(s) 38, 104
HapII CCGG 1 cut(s) 112
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 88, 101
Hpy188III TCNNGA 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 2 cut(s) 125, 134
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 38, 104
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 28
MnlI CCTC 1 cut(s) 69
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 14
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 46
NruI TCGCGA 1 cut(s) 14
PfeI GAWTC 1 cut(s) 125
Ple19I CGATCG 1 cut(s) 12
PvuI CGATCG 1 cut(s) 12
RgaI GCGATCGC 1 cut(s) 12
RruI TCGCGA 1 cut(s) 14
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 113
SfaAI GCGATCGC 1 cut(s) 12
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 7 cut(s) 25, 50, 55, 116, 124, 125, 156
SgfI GCGATCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 38, 104
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 100
TfiI GAWTC 1 cut(s) 125
XspI CTAG 2 cut(s) 38, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.