Rw5G007180

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
7453979 .. 7457270
3292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007180.1

Sequence Viewer

Length: 2592 bp
ATGTCTTATTCTACAGCTAAAACAGTCCAAAGACTTGCGATCTTGTTTCCTCTGCTCATCATCTACTTGCTATTCATTCTCTCCTACGCAGTTGAAGCTGAAGATGAGAAAAAAATCACTAACATTGGAGCAATCATTGATGTTAATTCCCGTATCGGGAAAGAACAGAAAGCTGCTATGGAAATTGCAGCTGAAAACTTCAACAACCAGTCAGACACTCATGAGCTAATCCTTCATTTTCGAGATTCTGGCCGCGACCCTTTTCTTGCTGCTTATGCTGCTAAACATTTGATAAGGGAACAAAAGGTACAAGTGGTAATTGGCATGGAAACTTGGCAGGAAGCAGTTACAGTAGCTGATGTGGTCAAAAACCTATCTGATCAAATTCCGGTCATTTCCTTTGCAGCACCCACCATATCCCCGCCACTATTACAACGGCGTTGGCCTTCCTTGATACGAATGGCTACCGATGGTGCTGCTCAGATGAAATGCATTGGAGATATAGTTAATGCTTACAACTGGAAAAGGGTTGTTGTAATATATGAAGATGATGGTTATGGTGGTGGTGTGGGGAGGCTAGCTCTTTTATCTGAGACTCTAAGAAATGTTGGTTCTACAATTGAGCTTCGTATAGTTCTCCCACGACTTTCTGAGCCTGATACAAATTGGGATGAAATAAATAAGCAGCTGTTGGAGCTTTCCAATGTAAACTCTCGGGCATTTATAGTTCTTCAGTCATCTTTACCAACAGTAACTGGTCTATTCAAAGTGGCTAGGAAGATGGGATTTGTAGGAAATGATTCAGCTTGGATAATCACAGAGAGTATTGCTAGTTTGCTTGACCCTCATGGCAACTACGATATGGAAGGAACTCTGGGAATCAAGACCTACTACGCCAATGAGTCTAGTTCTTATGCTGAATTCCAGAAGGAATTCCAAGCTAAGTATGCAGAAGAAAATAACTCCAAGCCAGGAATTTATGCTCTTCGAGCATATGATACTATTAATGCCATTTCACAGGCCATAGAAGGAATCCCTAATAACACCACTAGTACTAGCCTTCAGGTTATGATAACTAGATCGTTGAGCAATTACAACGGTTTAAGTGGGAAAATGCAACTAAAAGGAGGTGAGGTACCGCTGGATTCTCCGAGATTCAGGATCATAAATATTGTGGGTGGGAAGACAGATAACGAATTAAACTTTTGGATACCAGACTTTGGATTTTCAGAAAGCCTTGAAAAAGTATCAGACAAATACAGAAGTAATGATGGTGTTGGCAAAGTCATTTGGCCCGGGAACCCAACACTGCCCTCCAAAGGCTGGGCAATGCCCACTGATGAGAAGCCAATGAAAATTTTGCTCCCAGCTTCCCACGAAAATTTTGTAAGGCATATCAGCCGGGAGAACTCAAATCAGATGGGAAAAGAGGGTTTATGTTTAGGAAAGGGAAAAGACGGTTTATGCTCAGGAAAGATATATGACGGTTTGAGTATTGATCTTTTCTGTTGCGTGCTATCTAAATTGAATTATTCCTTGCCACATGAATTTTATAAGGCCAATGGCACTTACAATGATATGGTAGAACAAGTCTATACCAAGACTTACGATGCTGTGATTGGCGATATGACTGTACTTGCATCGCGAATTGACAAAGTGGATTTCACTCAACCATATCTGGAGTCTGGTTTGTCATTGATAGTACCAGATAAATCTAATGAGTCAACATGGCTGTTTATGAAACCTTTCACATGGCAGATGTGGGTGGCTAGTTGTGCCATCTTAATCTACACTATGTTAATAATATGGTTCCTGGAGGGTCCTTCCAGTCCAGAATTTGATGGTCCATTGATGAATCAGATCGCCACAGCTACTTGGTTCTCCTTCTCATCTCTGTTCTTTGCTCACAGAGAGAAAATCTATAGCAATTTGACACGAGTGGTTTTCATAGTGTGGCTGTTTGTTGTATTCATCCTAAACTCAAGCTACACTGCTAATCTGTCTTCGATGCTTACAATTCAACGACTGAGCCCGAATGTAACAGACATTGAAATGTTAAGGACAACCAACTCATTAGTTGGTTGTGATAACGATTCATTTGTAAGGGATTACCTGGAGAATGTTCTTCAATTAAAAAACATCGAGACAGTAGAGAGCAACTTAAAACCCGAAACCTTCAGCAGCAACACGAGATTATCTGCTGTATTTCTTGAACTCCCATATGCAGAAGTTTTCATGAACAATTACTGTAAGGGATTTACCAACACCAAAGCCACCTACAGTTTTGGAGGCTTTAGCTTTGCATTTCAGAAAGGTTCTCCAATAGCGAGGAATTTCTCTATGGTCATCCTAGATCTATTGGAGAACGGAAAAATGAGAGAACTTCAAGATCACTGGTTGAATCCGAGCAAATGTCCAACCAATACAACTTCCGATATCCCAGAAAGCTTGACCATCGAGAGCTTTTGGGGCATCTTTGTAATATCCGGTGCGACTTCCACCCTCTGTCTTCTATCTTCTGCCATCTTGAAAAAGTTTGGACACCAAGAAGCATCCGGAACACGCCCTGAAAATTCCGTACAAGTGCTCTAA

Protein Analysis

863

Amino Acids

96.51

Weight (kDa)

5.45

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 51 - 373 8.6e-19 Periplasmic binding protein
ANF_receptor PF01094 57 - 392 2.5e-40 Receptor family ligand binding region
SBP_bac_3 PF00497 494 - 801 1.2e-11 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 519 - 569 2.5e-07 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 584 - 831 3.4e-28 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000350)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1554
Acc65I GGTACC 1 cut(s) 1135
AccB1I GGYRCC 1 cut(s) 1135
AccB7I CCANNNNNTGG 2 cut(s) 1220, 1323
AccII CGCG 2 cut(s) 255, 1645
AccIII TCCGGA 1 cut(s) 2555
AciI CCGC 3 cut(s) 253, 422, 1139
AclWI GGATC 1 cut(s) 1169
AcoI YGGCCR 1 cut(s) 250
AcuI CTGAAG 4 cut(s) 120, 716, 1046, 2161
AfaI GTAC 6 cut(s) 309, 1054, 1137, 1635, 1704, 2580
AfiI CCNNNNNNNGG 4 cut(s) 156, 1220, 1319, 1323
AhlI ACTAGT 1 cut(s) 1049
AjnI CCWGG 3 cut(s) 970, 1812, 2112
Alw21I GWGCWC 1 cut(s) 2589
Alw26I GTCTC 2 cut(s) 587, 2138
AlwI GGATC 1 cut(s) 1169
AlwNI CAGNNNCTG 2 cut(s) 356, 755
Ama87I CYCGRG 2 cut(s) 714, 1295
Aor13HI TCCGGA 1 cut(s) 2555
AoxI GGCC 5 cut(s) 250, 443, 1020, 1292, 1557
ApeKI GCWGC 8 cut(s) 173, 188, 269, 278, 404, 476, 685, 2181
AseI ATTAAT 1 cut(s) 1005
Asp700I GAANNNNTTC 3 cut(s) 799, 932, 1745
Asp718I GGTACC 1 cut(s) 1135
AspS9I GGNCC 3 cut(s) 1293, 1820, 1844
AsuC2I CCSGG 3 cut(s) 1296, 1297, 1403
AsuHPI GGTGA 1 cut(s) 1142
AsuNHI GCTAGC 1 cut(s) 577
AvaI CYCGRG 2 cut(s) 714, 1295
AvaII GGWCC 2 cut(s) 1820, 1844
BanI GGYRCC 1 cut(s) 1135
BanII GRGCYC 1 cut(s) 2033
BauI CACGAG 2 cut(s) 1935, 2188
BbsI GAAGAC 3 cut(s) 1190, 1995, 2501
Bbv12I GWGCWC 1 cut(s) 2589
BbvI GCAGC 8 cut(s) 160, 200, 256, 265, 416, 463, 697, 2193
BccI CCATC 9 cut(s) 464, 545, 775, 1265, 1414, 1787, 1835, 2462, 2531
BceAI ACGGC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 3 cut(s) 972, 1814, 2114
BciVI GTATCC 1 cut(s) 1203
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 3 cut(s) 1296, 1297, 1403
BcoDI GTCTC 2 cut(s) 587, 2138
BcuI ACTAGT 1 cut(s) 1049
BfaI CTAG 9 cut(s) 578, 774, 831, 906, 1050, 1056, 1077, 1770, 2351
BfmI CTRYAG 3 cut(s) 12, 1921, 2278
BfuI GTATCC 1 cut(s) 1203
BglII AGATCT 1 cut(s) 2353
BisI GCNGC 9 cut(s) 174, 189, 253, 270, 279, 405, 477, 686, 2182
BlsI GCNGC 9 cut(s) 175, 190, 254, 271, 280, 406, 478, 687, 2183
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 6 cut(s) 972, 1296, 1297, 1403, 1814, 2114
Bme18I GGWCC 2 cut(s) 1820, 1844
BmeT110I CYCGRG 2 cut(s) 714, 1295
BmgT120I GGNCC 3 cut(s) 1293, 1820, 1844
BmiI GGNNCC 4 cut(s) 1137, 1301, 1811, 1821
BmrFI CCNGG 6 cut(s) 972, 1296, 1297, 1403, 1814, 2114
BmsI GCATC 5 cut(s) 1600, 1649, 1998, 2481, 2561
BmtI GCTAGC 1 cut(s) 581
BpiI GAAGAC 3 cut(s) 1190, 1995, 2501
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpmI CTGGAG 3 cut(s) 1700, 1835, 2135
Bpu10I CCTNAGC 1 cut(s) 1468
BpuEI CTTGAG 1 cut(s) 1966
BpuMI CCSGG 3 cut(s) 1296, 1297, 1403
BsaJI CCNNGG 1 cut(s) 1295
BsaWI WCCGGW 3 cut(s) 388, 2486, 2555
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 1119, 1149
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 1220, 1319, 1323
Bse1I ACTGG 5 cut(s) 208, 524, 760, 1827, 2399
Bse3DI GCAATG 1 cut(s) 1335
BseAI TCCGGA 1 cut(s) 2555
BseBI CCWGG 3 cut(s) 972, 1814, 2114
BseDI CCNNGG 1 cut(s) 1295
BseGI GGATG 4 cut(s) 676, 1971, 2346, 2552
BseLI CCNNNNNNNGG 4 cut(s) 156, 1220, 1319, 1323
BseMI GCAATG 1 cut(s) 1335
BseMII CTCAG 5 cut(s) 494, 582, 642, 1482, 2018
BseNI ACTGG 5 cut(s) 208, 524, 760, 1827, 2399
BseXI GCAGC 8 cut(s) 160, 200, 256, 265, 416, 463, 697, 2193
BseYI CCCAGC 2 cut(s) 1323, 1366
Bsh1236I CGCG 2 cut(s) 255, 1645
BshFI GGCC 5 cut(s) 252, 445, 1022, 1294, 1559
BshNI GGYRCC 1 cut(s) 1135
BsiHKAI GWGCWC 1 cut(s) 2589
BsiHKCI CYCGRG 2 cut(s) 714, 1295
BsiSI CCGG 5 cut(s) 389, 1296, 1402, 2487, 2556
BslI CCNNNNNNNGG 4 cut(s) 156, 1220, 1319, 1323
BsmAI GTCTC 2 cut(s) 587, 2138
BsnI GGCC 5 cut(s) 252, 445, 1022, 1294, 1559
BsoBI CYCGRG 2 cut(s) 714, 1295
Bsp1286I GDGCHC 2 cut(s) 2033, 2589
Bsp13I TCCGGA 1 cut(s) 2555
Bsp143I GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
Bsp68I TCGCGA 1 cut(s) 1645
BspACI CCGC 3 cut(s) 253, 422, 1139
BspANI GGCC 5 cut(s) 252, 445, 1022, 1294, 1559
BspCNI CTCAG 5 cut(s) 493, 583, 643, 1481, 2019
BspEI TCCGGA 1 cut(s) 2555
BspFNI CGCG 2 cut(s) 255, 1645
BspHI TCATGA 2 cut(s) 220, 2235
BspLI GGNNCC 4 cut(s) 1137, 1301, 1811, 1821
BspOI GCTAGC 1 cut(s) 581
BspPI GGATC 1 cut(s) 1169
BspQI GCTCTTC 1 cut(s) 990
BspT107I GGYRCC 1 cut(s) 1135
BsrDI GCAATG 1 cut(s) 1335
BsrI ACTGG 5 cut(s) 208, 524, 760, 1827, 2399
BssECI CCNNGG 1 cut(s) 1295
BssMI GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
BssSI CACGAG 2 cut(s) 1935, 2188
Bst2BI CACGAG 2 cut(s) 1935, 2188
Bst2UI CCWGG 3 cut(s) 972, 1814, 2114
Bst6I CTCTTC 1 cut(s) 990
BstC8I GCNNGC 2 cut(s) 579, 1514
BstDEI CTNAG 7 cut(s) 480, 591, 599, 651, 942, 1468, 2027
BstF5I GGATG 4 cut(s) 676, 1971, 2346, 2552
BstFNI CGCG 2 cut(s) 255, 1645
BstKTI GATC 8 cut(s) 42, 382, 1082, 1164, 1501, 1863, 2356, 2392
BstMAI GTCTC 2 cut(s) 587, 2138
BstMBI GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
BstMWI GCNNNNNNNGC 8 cut(s) 95, 275, 278, 694, 947, 989, 1775, 2469
BstNI CCWGG 3 cut(s) 972, 1814, 2114
BstSCI CCNGG 6 cut(s) 970, 1294, 1295, 1401, 1812, 2112
BstSFI CTRYAG 3 cut(s) 12, 1921, 2278
BstUI CGCG 2 cut(s) 255, 1645
BstV1I GCAGC 8 cut(s) 160, 200, 256, 265, 416, 463, 697, 2193
BstV2I GAAGAC 3 cut(s) 1190, 1995, 2501
BstX2I RGATCY 1 cut(s) 2353
BstYI RGATCY 1 cut(s) 2353
BsuI GTATCC 1 cut(s) 1203
BsuRI GGCC 5 cut(s) 252, 445, 1022, 1294, 1559
BtgZI GCGATG 1 cut(s) 1626
BtsCI GGATG 4 cut(s) 676, 1971, 2346, 2552
BtsI GCAGTG 2 cut(s) 1307, 1989
BtsIMutI CAGTG 4 cut(s) 1307, 1335, 1989, 2392
BtuMI TCGCGA 1 cut(s) 1645
Cac8I GCNNGC 2 cut(s) 579, 1514
CaiI CAGNNNCTG 2 cut(s) 356, 755
CciI TCATGA 2 cut(s) 220, 2235
Cfr13I GGNCC 3 cut(s) 1293, 1820, 1844
Cfr9I CCCGGG 1 cut(s) 1295
Csp6I GTAC 6 cut(s) 308, 1053, 1136, 1634, 1703, 2579
CviAII CATG 7 cut(s) 221, 325, 848, 1544, 1728, 1752, 2236
CviQI GTAC 6 cut(s) 308, 1053, 1136, 1634, 1703, 2579
DdeI CTNAG 7 cut(s) 480, 591, 599, 651, 942, 1468, 2027
DpnI GATC 8 cut(s) 41, 381, 1081, 1163, 1500, 1862, 2355, 2391
DpnII GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 990
EarI CTCTTC 1 cut(s) 990
Eco24I GRGCYC 1 cut(s) 2033
Eco32I GATATC 1 cut(s) 2437
Eco47I GGWCC 2 cut(s) 1820, 1844
Eco57I CTGAAG 4 cut(s) 120, 716, 1046, 2161
Eco88I CYCGRG 2 cut(s) 714, 1295
EcoO109I RGGNCCY 1 cut(s) 1820
EcoRI GAATTC 2 cut(s) 920, 932
EcoRII CCWGG 3 cut(s) 970, 1812, 2112
EcoRV GATATC 1 cut(s) 2437
EcoT22I ATGCAT 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 2033
FaeI CATG 7 cut(s) 224, 328, 851, 1547, 1731, 1755, 2239
FatI CATG 7 cut(s) 220, 324, 847, 1543, 1727, 1751, 2235
FauI CCCGC 1 cut(s) 429
FauNDI CATATG 2 cut(s) 994, 2221
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 9 cut(s) 174, 189, 253, 270, 279, 405, 477, 686, 2182
FokI GGATG 4 cut(s) 683, 1958, 2333, 2539
FriOI GRGCYC 1 cut(s) 2033
Fsp4HI GCNGC 9 cut(s) 174, 189, 253, 270, 279, 405, 477, 686, 2182
FspBI CTAG 9 cut(s) 578, 774, 831, 906, 1050, 1056, 1077, 1770, 2351
GluI GCNGC 9 cut(s) 174, 189, 253, 270, 279, 405, 477, 686, 2182
GsaI CCCAGC 2 cut(s) 1327, 1370
GsuI CTGGAG 3 cut(s) 1700, 1835, 2135
HaeIII GGCC 5 cut(s) 252, 445, 1022, 1294, 1559
HapII CCGG 5 cut(s) 389, 1296, 1402, 2487, 2556
Hin1II CATG 7 cut(s) 224, 328, 851, 1547, 1731, 1755, 2239
HincII GTYRAC 1 cut(s) 1725
HindII GTYRAC 1 cut(s) 1725
HindIII AAGCTT 1 cut(s) 2446
HpaII CCGG 5 cut(s) 389, 1296, 1402, 2487, 2556
HphI GGTGA 1 cut(s) 1142
Hpy166II GTNNAC 2 cut(s) 709, 1725
Hpy8I GTNNAC 2 cut(s) 709, 1725
HpyAV CCTTC 9 cut(s) 242, 456, 860, 922, 1022, 1070, 1833, 1894, 2185
HpyCH4V TGCA 8 cut(s) 188, 404, 492, 950, 1117, 1640, 2225, 2303
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 275, 278, 694, 947, 989, 1775, 2469
HpyF3I CTNAG 7 cut(s) 480, 591, 599, 651, 942, 1468, 2027
Hsp92II CATG 7 cut(s) 224, 328, 851, 1547, 1731, 1755, 2239
Kpn2I TCCGGA 1 cut(s) 2555
KpnI GGTACC 1 cut(s) 1139
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
LguI GCTCTTC 1 cut(s) 990
LmnI GCTCC 3 cut(s) 128, 694, 1368
Lsp1109I GCAGC 8 cut(s) 160, 200, 256, 265, 416, 463, 697, 2193
LweI GCATC 5 cut(s) 1600, 1649, 1998, 2481, 2561
MaeI CTAG 9 cut(s) 578, 774, 831, 906, 1050, 1056, 1077, 1770, 2351
MaeIII GTNAC 3 cut(s) 346, 751, 2038
MalI GATC 8 cut(s) 41, 381, 1081, 1163, 1500, 1862, 2355, 2391
MboI GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 2353
MhlI GDGCHC 2 cut(s) 2033, 2589
MlyI GAGTC 4 cut(s) 589, 911, 1691, 1730
MmeI TCCRAC 2 cut(s) 672, 2441
Mph1103I ATGCAT 1 cut(s) 494
MroI TCCGGA 1 cut(s) 2555
MroXI GAANNNNTTC 3 cut(s) 799, 932, 1745
MslI CAYNNNNRTG 1 cut(s) 2051
MspA1I CMGCKG 3 cut(s) 191, 688, 1141
MspI CCGG 5 cut(s) 389, 1296, 1402, 2487, 2556
MspR9I CCNGG 6 cut(s) 972, 1296, 1297, 1403, 1814, 2114
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 3 cut(s) 972, 1814, 2114
MvnI CGCG 2 cut(s) 255, 1645
MwoI GCNNNNNNNGC 8 cut(s) 95, 275, 278, 694, 947, 989, 1775, 2469
NciI CCSGG 3 cut(s) 1296, 1297, 1403
NdeI CATATG 2 cut(s) 994, 2221
NdeII GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
NheI GCTAGC 1 cut(s) 577
NlaIII CATG 7 cut(s) 224, 328, 851, 1547, 1731, 1755, 2239
NlaIV GGNNCC 4 cut(s) 1137, 1301, 1811, 1821
NruI TCGCGA 1 cut(s) 1645
NsiI ATGCAT 1 cut(s) 494
PagI TCATGA 2 cut(s) 220, 2235
PciSI GCTCTTC 1 cut(s) 990
PdmI GAANNNNTTC 3 cut(s) 799, 932, 1745
PfeI GAWTC 9 cut(s) 245, 800, 879, 1032, 1145, 1155, 1855, 2093, 2401
PflMI CCANNNNNTGG 2 cut(s) 1220, 1323
PfoI TCCNGGA 1 cut(s) 1812
PkrI GCNGC 9 cut(s) 175, 190, 254, 271, 280, 406, 478, 687, 2183
PleI GAGTC 4 cut(s) 589, 910, 1690, 1729
PpsI GAGTC 4 cut(s) 589, 910, 1690, 1729
PpuMI RGGWCCY 1 cut(s) 1820
PshBI ATTAAT 1 cut(s) 1005
PsiI TTATAA 1 cut(s) 1554
Psp5II RGGWCCY 1 cut(s) 1820
Psp6I CCWGG 3 cut(s) 970, 1812, 2112
PspFI CCCAGC 2 cut(s) 1323, 1366
PspGI CCWGG 3 cut(s) 970, 1812, 2112
PspN4I GGNNCC 4 cut(s) 1137, 1301, 1811, 1821
PspPI GGNCC 3 cut(s) 1293, 1820, 1844
PspPPI RGGWCCY 1 cut(s) 1820
PsrI GAACNNNNNNTAC 2 cut(s) 291, 323
PstNI CAGNNNCTG 2 cut(s) 356, 755
PsuI RGATCY 1 cut(s) 2353
PvuII CAGCTG 2 cut(s) 191, 688
RruI TCGCGA 1 cut(s) 1645
RsaI GTAC 6 cut(s) 309, 1054, 1137, 1635, 1704, 2580
RsaNI GTAC 6 cut(s) 308, 1053, 1136, 1634, 1703, 2579
RseI CAYNNNNRTG 1 cut(s) 2051
SapI GCTCTTC 1 cut(s) 990
SatI GCNGC 9 cut(s) 174, 189, 253, 270, 279, 405, 477, 686, 2182
Sau3AI GATC 8 cut(s) 39, 379, 1079, 1161, 1498, 1860, 2353, 2389
Sau96I GGNCC 3 cut(s) 1293, 1820, 1844
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 4 cut(s) 589, 911, 1691, 1730
ScrFI CCNGG 6 cut(s) 972, 1296, 1297, 1403, 1814, 2114
SduI GDGCHC 2 cut(s) 2033, 2589
SfaNI GCATC 5 cut(s) 1600, 1649, 1998, 2481, 2561
SfcI CTRYAG 3 cut(s) 12, 1921, 2278
SinI GGWCC 2 cut(s) 1820, 1844
SmaI CCCGGG 1 cut(s) 1297
SmiMI CAYNNNNRTG 1 cut(s) 2051
SmlI CTYRAG 1 cut(s) 1981
SmoI CTYRAG 1 cut(s) 1981
SpeI ACTAGT 1 cut(s) 1049
SsiI CCGC 3 cut(s) 253, 422, 1139
SspI AATATT 1 cut(s) 1171
SspMI CTAG 9 cut(s) 578, 774, 831, 906, 1050, 1056, 1077, 1770, 2351
StyD4I CCNGG 6 cut(s) 970, 1294, 1295, 1401, 1812, 2112
TaqI TCGA 5 cut(s) 241, 988, 2006, 2142, 2457
TatI WGTACW 2 cut(s) 1052, 1633
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 9 cut(s) 245, 800, 879, 1032, 1145, 1155, 1855, 2093, 2401
TscAI CASTG 4 cut(s) 1314, 1342, 1996, 2399
TseI GCWGC 8 cut(s) 173, 188, 269, 278, 404, 476, 685, 2181
TspGWI ACGGA 2 cut(s) 2382, 2566
TspMI CCCGGG 1 cut(s) 1295
TspRI CASTG 4 cut(s) 1314, 1342, 1996, 2399
Van91I CCANNNNNTGG 2 cut(s) 1220, 1323
VpaK11BI GGWCC 2 cut(s) 1820, 1844
VspI ATTAAT 1 cut(s) 1005
XmaI CCCGGG 1 cut(s) 1295
XmnI GAANNNNTTC 3 cut(s) 799, 932, 1745
XspI CTAG 9 cut(s) 578, 774, 831, 906, 1050, 1056, 1077, 1770, 2351
ZrmI AGTACT 1 cut(s) 1054
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.