Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000350

Physical Location & Seq

Genomic Coordinates Forward (+)

2443103 .. 2444176

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTGGACAGCAAGTGGTGGCATATTAGCCTACACTATCTTCATCATATGGTTTCTGGAGCGCTCAGTTAATCCAAAATTCAGCGGTCCATTGAAGAATCAGATTGGCAGAGCAATTTGGTTCGCCTTCACCTCTTTGTTCTTTTCTCACAGAGAGAGACTCTATAACAAATTAACTAAAGTAGTTGTTCTAGTGTGGCTGTTTGTTGTATTGATCCTGGTCACAAGCTACACTGCTAATCTCTCTTCAATCCTGACGATTCAACGATTGAAACCGAATGTATCAGACATTGAAACGCTAAAGAGAACCAACTCTAAAGTTGGCTTGAATACGCATTCGTTTGTCGTCAATTACTTGGTGACTGTACTTGGATTCAAGCCAGAAAACCTCATCAAAATAGACAGTGAATCCGACTACATAGAGGCGTTCGAAAACAGAAGTATATCTGCTGCATTGCTTGAGTTCCCATATGCGAAAGTATTTATGAACCAGTACTGCAAGGGATATACTGCGACCACACTCTCCTATAGATTTGGAGGGCTAGGCTTTATATTTCAGAAAGACTCTCCAATTGCCCGGGATTTCACCAAGGTCATTTTAGAGTTATTGGAGGAGGGAAAAATGATGTCACTTGAAGATGCTTGGTTGACACCAAATCGTGGGTGTCCAAACAATTCAACTTCAGATGGACCAGAGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

235

Amino Acids

26.6

Weight (kDa)

9.13

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	1 - 219	2e-24	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04591 FvH4_1g04600 FvH4_3g08210 FvH4_3g08210 FvH4_3g08211 FvH4_3g32960 FvH4_3g32961 FvH4_5g21700 FvH4_6g22211
malus_domestica	MD05G1305700.v1.1 MD05G1305800.v1.1 MD05G1305900.v1.1 MD05G1306400.v1.1
prunus_persica	Prupe.4G056200_v2.0.a1 Prupe.4G056200_v2.0.a1 Prupe.4G056600_v2.0.a1 Prupe.4G056600_v2.0.a1
pyrus_communis	pycom05g28300 pycom05g28310 pycom05g28350 pycom10g23860
rosa_chinensis	RchiOBHm_Chr5g0009861 RchiOBHm_Chr5g0009881 RchiOBHm_Chr5g0009931 RchiOBHm_Chr5g0009951 RchiOBHm_Chr5g0009981 RchiOBHm_Chr5g0055531 RchiOBHm_Chr5g0055541
rosa_laevigata	RLG00000015779 RLG00000031705 RLG00000031706 RLG00000031711 RLG00000031713 RLG00000031715 RLG00000031716 RLG00000034996
rosa_multiflora	Rmu_co8083594.1_g000001 Rmu_co8206032.1_g000001 Rmu_co8356045.1_g000001 Rmu_sc0000773.1_g000002 Rmu_sc0001709.1_g000001 Rmu_sc0001709.1_g000007 Rmu_sc0001709.1_g000012 Rmu_sc0001709.1_g000013 Rmu_sc0001709.1_g000018 Rmu_sc0001709.1_g000019 Rmu_sc0002275.1_g000004 Rmu_sc0003071.1_g000002 Rmu_sc0003071.1_g000003 Rmu_sc0003630.1_g000014 Rmu_sc0003630.1_g000017 Rmu_sc0003630.1_g000043 Rmu_sc0003630.1_g000044 Rmu_sc0004626.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024770 Rroxscaffold_1G00066180 Rroxscaffold_1G00066200 Rroxscaffold_1G00066210 Rroxscaffold_1G00066240 Rroxscaffold_1G00066250 Rroxscaffold_1G00066320 Rroxscaffold_1G00066340 Rroxscaffold_3G00234120
rosa_rugosa	Rorug04G0446400 Rorug04G0446500 Rorug04G0446600 Rorug04G0447000 Rorug04G0447100 Rorug04G0447200 Rorug04G0447300 Rorug04G0447900 Rorug04G0448200
rosa_samantha	Rh2CG021600 Rh2DG021300 Rh4AG195700 Rh4BG194700 Rh5AG077900 Rh5AG078100 Rh5AG078600 Rh5AG078700 Rh5AG078900 Rh5AG079000 Rh5AG079100 Rh5AG363100 Rh5CG085300 Rh5CG085900 Rh5CG086000 Rh5CG086200 Rh5CG086400 Rh5CG086500 Rh5CG397300 Rh5DG073400 Rh5DG074000 Rh5DG074100 Rh5DG074300 Rh5DG074500 Rh5DG074600 Rh5DG129000 Rh5DG129400 Rh5DG388500
rosa_wichuraiana	Rw2G001690 Rw5G007180 Rw5G007190 Rw5G007230 Rw5G007240 Rw5G007250 Rw5G007320 Rw5G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	659
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	2 cut(s)	366, 494
AfeI	AGCGCT	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	659
AgsI	TTSAA	9 cut(s)	94, 249, 263, 271, 293, 328, 376, 635, 678
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	576
Aor51HI	AGCGCT	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	86, 689
AsuC2I	CCSGG	2 cut(s)	577, 578
AsuHPI	GGTGA	3 cut(s)	121, 370, 577
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	2 cut(s)	86, 689
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	2 cut(s)	577, 578
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	2 cut(s)	191, 542
BfmI	CTRYAG	1 cut(s)	526
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	218, 577, 578
Bme18I	GGWCC	2 cut(s)	86, 689
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	86, 689
BmrFI	CCNGG	3 cut(s)	218, 577, 578
BmsI	GCATC	1 cut(s)	628
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	2 cut(s)	577, 578
BsaJI	CCNNGG	2 cut(s)	576, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	576, 588
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	576
Bsp119I	TTCGAA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	77
BspPI	GGATC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	576, 588
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	364, 404
Bst6I	CTCTTC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	216, 575, 576
BstSFI	CTRYAG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 409
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	86, 689
Cfr9I	CCCGGG	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	365, 493
CviJI	RGCY	7 cut(s)	29, 199, 228, 324, 379, 541, 546
CviKI_1	RGCY	7 cut(s)	29, 199, 228, 324, 379, 541, 546
CviQI	GTAC	2 cut(s)	365, 493
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	588
Eco47I	GGWCC	2 cut(s)	86, 689
Eco47III	AGCGCT	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
FauNDI	CATATG	2 cut(s)	47, 469
Fnu4HI	GCNGC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	2 cut(s)	191, 542
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	64
HapII	CCGG	1 cut(s)	577
HhaI	GCGC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	6 cut(s)	97, 159, 259, 372, 407, 563
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	3 cut(s)	121, 370, 577
Hpy166II	GTNNAC	2 cut(s)	6, 648
Hpy188I	TCNGA	5 cut(s)	102, 286, 412, 558, 685
Hpy188III	TCNNGA	2 cut(s)	56, 253
Hpy8I	GTNNAC	2 cut(s)	6, 648
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	364, 404
HpyCH4V	TGCA	2 cut(s)	452, 498
HpyF3I	CTNAG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	41, 203, 230, 266, 393, 503, 590
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	191, 542
MaeIII	GTNAC	3 cut(s)	220, 358, 627
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	4 cut(s)	31, 106, 237, 647
MfeI	CAATTG	1 cut(s)	570
MluCI	AATT	6 cut(s)	77, 114, 170, 349, 570, 673
MlyI	GAGTC	2 cut(s)	153, 557
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	6 cut(s)	142, 398, 415, 530, 604, 607
MseI	TTAA	2 cut(s)	69, 173
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	3 cut(s)	218, 577, 578
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	218
NciI	CCSGG	2 cut(s)	577, 578
NdeI	CATATG	2 cut(s)	47, 469
NdeII	GATC	1 cut(s)	213
NmuCI	GTSAC	3 cut(s)	220, 358, 627
NspV	TTCGAA	1 cut(s)	429
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	4 cut(s)	97, 259, 372, 407
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	2 cut(s)	153, 557
PpsI	GAGTC	2 cut(s)	153, 557
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	86, 689
RsaI	GTAC	2 cut(s)	366, 494
RsaNI	GTAC	2 cut(s)	365, 493
SaqAI	TTAA	2 cut(s)	69, 173
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	86, 689
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	2 cut(s)	153, 557
ScrFI	CCNGG	3 cut(s)	218, 577, 578
SetI	ASST	4 cut(s)	134, 230, 390, 594
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	2 cut(s)	86, 689
SmaI	CCCGGG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	6 cut(s)	77, 114, 170, 349, 570, 673
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	191, 542
StyD4I	CCNGG	3 cut(s)	216, 575, 576
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	2 cut(s)	364, 404
TaqI	TCGA	1 cut(s)	429
TasI	AATT	6 cut(s)	77, 114, 170, 349, 570, 673
TatI	WGTACW	2 cut(s)	364, 492
TfiI	GAWTC	4 cut(s)	97, 259, 372, 407
Tru1I	TTAA	2 cut(s)	69, 173
Tru9I	TTAA	2 cut(s)	69, 173
TscAI	CASTG	2 cut(s)	238, 409
TseFI	GTSAC	3 cut(s)	220, 358, 627
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	3 cut(s)	220, 358, 627
TspDTI	ATGAA	2 cut(s)	31, 500
TspMI	CCCGGG	1 cut(s)	576
TspRI	CASTG	2 cut(s)	238, 409
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	86, 689
XapI	RAATTY	1 cut(s)	77
XmaI	CCCGGG	1 cut(s)	576
XspI	CTAG	2 cut(s)	191, 542
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.